Gene annotation
Transcriptome id Sobic.002G405900.3,Sobic.002G405900.1,Sobic.002G405900.2
Synonym Sb02g042010
Functional annotation zinc finger, RING-type, putative, expressed
UniProt A0A1W0W7U7 , C5X4S8 , A0A1W0W7S2
Pfam PF13920
Panther DB PTHR15315 PTHR15315:SF30
NCBI CDD KOG4172; Predicted E3 ubiquitin ligase KOG1039Predicted E3 ubiquitin ligase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G47160 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os07g46700.3 : zinc finger, RING-type, putative, expressed
MaizeGDB (Corn) Zm00025a057395 , Zm00025a015368
Brachypodium KQJ85326 , KQJ85327 , PNT74607 , KQK14815
Barley HORVU2Hr1G118640.5 , HORVU2Hr1G118640.1 , HORVU2Hr1G118640.2 , HORVU2Hr1G118640.3 , HORVU2Hr1G118640.6 , HORVU2Hr1G022260.8 , HORVU2Hr1G022260.9 , HORVU2Hr1G022260.5 , HORVU2Hr1G022260.6 , HORVU2Hr1G022260.7 , HORVU2Hr1G022260.1 , HORVU2Hr1G022260.2 , HORVU2Hr1G022260.3
Wheat TraesCS2B02G148700 , TraesCS2B02G148700 , TraesCS2A02G586800 , TraesCS2A02G126800 , TraesCS2A02G126800 , TraesCS2A02G126800 , TraesCS2B02G596600 , TraesCS2D02G129300 , TraesCS2D02G129300
Populus -


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cDNA sequences
Sobic.002G405900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G409600 KH domain containing protein, putative, expressed K13095: splicing factor 1
2 Sobic.004G205600 bromodomain domain containing protein, expressed -
3 Sobic.001G466700 peptidyl-prolyl cis-trans isomerase, putative, expressed K10598: PPIL2, CYC4, peptidyl-prolyl cis-trans isomerase-like 2
4 Sobic.004G021100 SSE1, putative, expressed K13335: peroxin-16
5 Sobic.007G217000 tetratricopeptide repeat domain containing protein, expressed K13342: PEX5, peroxin-5
6 Sobic.002G310200 expressed protein -
7 Sobic.003G187400 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
8 Sobic.003G056100 transcription initiation factor, putative, expressed K03129: transcription initiation factor TFIID subunit 4
9 Sobic.002G388200 LTV1, putative, expressed K14798: protein LTV1
10 Sobic.003G397800 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
11 Sobic.001G125200 HEAT repeat family protein, putative, expressed -
12 Sobic.009G056800 growth inhibition and differentiation-related protein 88, putative, expressed -
13 Sobic.007G009400 bromodomain domain containing protein, expressed -
14 Sobic.008G067600 protein kinase PKN/PRK1, effector, putative, expressed -
15 Sobic.007G134600 agenet domain containing protein, expressed -
16 Sobic.009G249200 transmembrane protein, putative, expressed -
17 Sobic.009G042700 -(PubMedID : 29751546)@transporter, monovalent cation:proton antiporter-2 family, putative, expressed -
18 Sobic.003G377800 DNA repair metallo-beta-lactamase, putative, expressed K15340: DCLRE1A, SNM1A, DNA cross-link repair 1A protein
19 Sobic.007G096000 expressed protein -
20 Sobic.004G283000 nucleic acid binding protein, putative, expressed -


Gene co-expression network
sample Sobic002G405900 Sobic002G405900 Sobic001G409600 Sobic001G409600 Sobic002G405900--Sobic001G409600 Sobic004G205600 Sobic004G205600 Sobic002G405900--Sobic004G205600 Sobic001G466700 Sobic001G466700 Sobic002G405900--Sobic001G466700 Sobic004G021100 Sobic004G021100 Sobic002G405900--Sobic004G021100 Sobic007G217000 Sobic007G217000 Sobic002G405900--Sobic007G217000 Sobic002G310200 Sobic002G310200 Sobic002G405900--Sobic002G310200 Sobic003G187400 Sobic003G187400 Sobic002G405900--Sobic003G187400 Sobic003G056100 Sobic003G056100 Sobic002G405900--Sobic003G056100 Sobic002G388200 Sobic002G388200 Sobic002G405900--Sobic002G388200 Sobic003G397800 Sobic003G397800 Sobic001G409600--Sobic003G397800 Sobic010G101800 Sobic010G101800 Sobic001G409600--Sobic010G101800 Sobic002G297200 Sobic002G297200 Sobic001G409600--Sobic002G297200 Sobic001G109800 Sobic001G109800 Sobic001G409600--Sobic001G109800 Sobic001G125200 Sobic001G125200 Sobic001G409600--Sobic001G125200 Sobic007G096000 Sobic007G096000 Sobic001G409600--Sobic007G096000 Sobic009G249200 Sobic009G249200 Sobic001G409600--Sobic009G249200 Sobic001G409600--Sobic003G187400 Sobic001G016000 Sobic001G016000 Sobic001G409600--Sobic001G016000 Sobic004G057400 Sobic004G057400 Sobic004G205600--Sobic004G057400 Sobic001G497300 Sobic001G497300 Sobic004G205600--Sobic001G497300 Sobic001G090400 Sobic001G090400 Sobic004G205600--Sobic001G090400 Sobic003G081000 Sobic003G081000 Sobic004G205600--Sobic003G081000 Sobic007G026300 Sobic007G026300 Sobic004G205600--Sobic007G026300 Sobic009G000500 Sobic009G000500 Sobic004G205600--Sobic009G000500 Sobic002G157300 Sobic002G157300 Sobic004G205600--Sobic002G157300 Sobic009G065100 Sobic009G065100 Sobic004G205600--Sobic009G065100 Sobic002G157000 Sobic002G157000 Sobic004G205600--Sobic002G157000 Sobic006G252700 Sobic006G252700 Sobic001G466700--Sobic006G252700 Sobic001G466700--Sobic003G081000 Sobic001G143500 Sobic001G143500 Sobic001G466700--Sobic001G143500 Sobic001G466700--Sobic002G388200 Sobic001G371200 Sobic001G371200 Sobic001G466700--Sobic001G371200 Sobic001G466700--Sobic004G021100 Sobic007G119200 Sobic007G119200 Sobic001G466700--Sobic007G119200 Sobic009G056800 Sobic009G056800 Sobic001G466700--Sobic009G056800 Sobic007G118200 Sobic007G118200 Sobic001G466700--Sobic007G118200 Sobic004G021100--Sobic009G056800 Sobic004G021100--Sobic007G026300 Sobic001G512700 Sobic001G512700 Sobic004G021100--Sobic001G512700 Sobic006G173100 Sobic006G173100 Sobic004G021100--Sobic006G173100 Sobic007G104800 Sobic007G104800 Sobic004G021100--Sobic007G104800 Sobic004G274200 Sobic004G274200 Sobic004G021100--Sobic004G274200 Sobic004G021100--Sobic004G205600 Sobic004G021100--Sobic003G187400 Sobic007G118600 Sobic007G118600 Sobic004G021100--Sobic007G118600 Sobic001G114000 Sobic001G114000 Sobic007G217000--Sobic001G114000 Sobic008G047800 Sobic008G047800 Sobic007G217000--Sobic008G047800 Sobic009G166300 Sobic009G166300 Sobic007G217000--Sobic009G166300 Sobic001G155000 Sobic001G155000 Sobic007G217000--Sobic001G155000 Sobic001G474600 Sobic001G474600 Sobic007G217000--Sobic001G474600 Sobic007G011300 Sobic007G011300 Sobic007G217000--Sobic007G011300 Sobic007G217000--Sobic007G118600 Sobic007G217000--Sobic002G310200 Sobic004G067700 Sobic004G067700 Sobic007G217000--Sobic004G067700 Sobic001G222500 Sobic001G222500 Sobic002G310200--Sobic001G222500 Sobic002G310200--Sobic008G047800 Sobic002G310200--Sobic007G217000 Sobic004G084300 Sobic004G084300 Sobic002G310200--Sobic004G084300 Sobic002G310200--Sobic007G096000 Sobic002G310200--Sobic010G101800 Sobic003G443100 Sobic003G443100 Sobic002G310200--Sobic003G443100 Sobic008G067600 Sobic008G067600 Sobic002G310200--Sobic008G067600 Sobic002G310200--Sobic004G067700 Sobic003G187400--Sobic002G157300 Sobic005G149500 Sobic005G149500 Sobic003G187400--Sobic005G149500 Sobic009G040700 Sobic009G040700 Sobic003G187400--Sobic009G040700 Sobic001G094000 Sobic001G094000 Sobic003G187400--Sobic001G094000 Sobic003G187400--Sobic006G173100 Sobic006G060100 Sobic006G060100 Sobic003G187400--Sobic006G060100 Sobic003G401000 Sobic003G401000 Sobic003G187400--Sobic003G401000 Sobic004G196700 Sobic004G196700 Sobic003G187400--Sobic004G196700 Sobic003G187400--Sobic007G104800 Sobic003G056100--Sobic001G125200 Sobic002G006900 Sobic002G006900 Sobic003G056100--Sobic002G006900 Sobic003G056100--Sobic008G067600 Sobic003G056100--Sobic001G512700 Sobic003G056100--Sobic001G497300 Sobic002G315200 Sobic002G315200 Sobic003G056100--Sobic002G315200 Sobic009G104201 Sobic009G104201 Sobic003G056100--Sobic009G104201 Sobic003G087400 Sobic003G087400 Sobic003G056100--Sobic003G087400 Sobic003G056100--Sobic007G217000 Sobic004G283000 Sobic004G283000 Sobic002G388200--Sobic004G283000 Sobic002G388200--Sobic009G056800 Sobic002G388200--Sobic006G173100 Sobic002G388200--Sobic003G187400 Sobic002G388200--Sobic001G466700 Sobic002G388200--Sobic007G118200 Sobic008G174300 Sobic008G174300 Sobic002G388200--Sobic008G174300 Sobic008G129100 Sobic008G129100 Sobic002G388200--Sobic008G129100 Sobic002G388200--Sobic003G081000
Octagon: transcription factors


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