Gene annotation
Transcriptome id Sobic.005G177500.1
Synonym ATCHIA, CHIA, Sb05g023700
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./middle senescence marker during developmental senescence (PubMedID : 27586543)
glycosyl hydrolase, putative, expressed
UniProt C5Y5U9
Pfam PF00704
Panther DB PTHR11177 PTHR11177:SF214
NCBI CDD -
KEGG Orthology K01183; chitinase
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT5G24090 : chitinase A
RAP-DB (Rice) LOC_Os05g15850.1 : glycosyl hydrolase, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQJ91843 , KQJ91845
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G068300 RCN4 Centroradialis-like1 homologous to TFL1 gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed -
2 Sobic.009G196400 expressed protein -
3 Sobic.010G176101 - -
4 Sobic.001G025101 - -
5 Sobic.001G462700 expressed protein -
6 Sobic.001G243400 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
7 Sobic.006G162100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glyoxalase family protein, putative, expressed -
8 Sobic.001G025300 hydrolase, alpha/beta fold family domain containing protein, expressed -
9 Sobic.004G022900 expressed protein -
10 Sobic.009G009600 expressed protein -
11 Sobic.004G148100 Cupin domain containing protein, expressed -
12 Sobic.001G444400 peroxidase precursor, putative, expressed K00430: peroxidase
13 Sobic.002G416600 peroxidase precursor, putative, expressed K00430: peroxidase
14 Sobic.002G057300 expressed protein -
15 Sobic.010G016250 - -
16 Sobic.006G039100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RALFL36 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
17 Sobic.010G016850 - -
18 Sobic.003G087300 nuclease PA3, putative, expressed -
19 Sobic.003G129000 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
20 Sobic.007G032900 Protein kinase domain containing protein, expressed K04730: interleukin-1 receptor-associated kinase 1


Gene co-expression network
sample Sobic005G177500 Sobic005G177500 Sobic006G068300 Sobic006G068300 Sobic005G177500--Sobic006G068300 Sobic009G196400 Sobic009G196400 Sobic005G177500--Sobic009G196400 Sobic010G176101 Sobic010G176101 Sobic005G177500--Sobic010G176101 Sobic001G025101 Sobic001G025101 Sobic005G177500--Sobic001G025101 Sobic001G462700 Sobic001G462700 Sobic005G177500--Sobic001G462700 Sobic001G243400 Sobic001G243400 Sobic005G177500--Sobic001G243400 Sobic006G162100 Sobic006G162100 Sobic005G177500--Sobic006G162100 Sobic001G025300 Sobic001G025300 Sobic005G177500--Sobic001G025300 Sobic004G022900 Sobic004G022900 Sobic005G177500--Sobic004G022900 Sobic006G068300--Sobic001G025101 Sobic006G068300--Sobic010G176101 Sobic006G068300--Sobic009G196400 Sobic006G068300--Sobic001G025300 Sobic002G416600 Sobic002G416600 Sobic006G068300--Sobic002G416600 Sobic004G071650 Sobic004G071650 Sobic006G068300--Sobic004G071650 Sobic006G068300--Sobic001G462700 Sobic006G068300--Sobic005G177500 Sobic003G117600 Sobic003G117600 Sobic006G068300--Sobic003G117600 Sobic001G444400 Sobic001G444400 Sobic009G196400--Sobic001G444400 Sobic002G139300 Sobic002G139300 Sobic009G196400--Sobic002G139300 Sobic006G153100 Sobic006G153100 Sobic009G196400--Sobic006G153100 Sobic002G421800 Sobic002G421800 Sobic009G196400--Sobic002G421800 Sobic001G333400 Sobic001G333400 Sobic009G196400--Sobic001G333400 Sobic009G106800 Sobic009G106800 Sobic009G196400--Sobic009G106800 Sobic004G240600 Sobic004G240600 Sobic009G196400--Sobic004G240600 Sobic003G087300 Sobic003G087300 Sobic009G196400--Sobic003G087300 Sobic007G141500 Sobic007G141500 Sobic009G196400--Sobic007G141500 Sobic010G176101--Sobic006G068300 Sobic010G176101--Sobic009G196400 Sobic010G176101--Sobic004G071650 Sobic001G471300 Sobic001G471300 Sobic010G176101--Sobic001G471300 Sobic008G076300 Sobic008G076300 Sobic010G176101--Sobic008G076300 Sobic010G176101--Sobic001G333400 Sobic002G044800 Sobic002G044800 Sobic010G176101--Sobic002G044800 Sobic010G016250 Sobic010G016250 Sobic010G176101--Sobic010G016250 Sobic010G176101--Sobic005G177500 Sobic001G025101--Sobic001G025300 Sobic001G025101--Sobic002G416600 Sobic003G088500 Sobic003G088500 Sobic001G025101--Sobic003G088500 Sobic005G051200 Sobic005G051200 Sobic001G025101--Sobic005G051200 Sobic001G025101--Sobic003G087300 Sobic004G166700 Sobic004G166700 Sobic001G025101--Sobic004G166700 Sobic004G245500 Sobic004G245500 Sobic001G025101--Sobic004G245500 Sobic010G044400 Sobic010G044400 Sobic001G025101--Sobic010G044400 Sobic003G345100 Sobic003G345100 Sobic001G025101--Sobic003G345100 Sobic002G247600 Sobic002G247600 Sobic001G462700--Sobic002G247600 Sobic001G325400 Sobic001G325400 Sobic001G462700--Sobic001G325400 Sobic006G039100 Sobic006G039100 Sobic001G462700--Sobic006G039100 Sobic009G111000 Sobic009G111000 Sobic001G462700--Sobic009G111000 Sobic007G204700 Sobic007G204700 Sobic001G462700--Sobic007G204700 Sobic001G462700--Sobic003G117600 Sobic010G008400 Sobic010G008400 Sobic001G462700--Sobic010G008400 Sobic001G331200 Sobic001G331200 Sobic001G462700--Sobic001G331200 Sobic004G046200 Sobic004G046200 Sobic001G462700--Sobic004G046200 Sobic002G346100 Sobic002G346100 Sobic001G243400--Sobic002G346100 Sobic001G243500 Sobic001G243500 Sobic001G243400--Sobic001G243500 Sobic001G335600 Sobic001G335600 Sobic001G243400--Sobic001G335600 Sobic001G331301 Sobic001G331301 Sobic001G243400--Sobic001G331301 Sobic004G273400 Sobic004G273400 Sobic001G243400--Sobic004G273400 Sobic001G100700 Sobic001G100700 Sobic001G243400--Sobic001G100700 Sobic001G243400--Sobic006G068300 Sobic005G213200 Sobic005G213200 Sobic001G243400--Sobic005G213200 Sobic001G243400--Sobic010G176101 Sobic004G148100 Sobic004G148100 Sobic006G162100--Sobic004G148100 Sobic007G215600 Sobic007G215600 Sobic006G162100--Sobic007G215600 Sobic002G040900 Sobic002G040900 Sobic006G162100--Sobic002G040900 Sobic004G189500 Sobic004G189500 Sobic006G162100--Sobic004G189500 Sobic006G162100--Sobic006G039100 Sobic002G055700 Sobic002G055700 Sobic006G162100--Sobic002G055700 Sobic005G177600 Sobic005G177600 Sobic006G162100--Sobic005G177600 Sobic006G113500 Sobic006G113500 Sobic006G162100--Sobic006G113500 Sobic006G162100--Sobic001G325400 Sobic001G025300--Sobic001G025101 Sobic001G025300--Sobic002G416600 Sobic002G183200 Sobic002G183200 Sobic001G025300--Sobic002G183200 Sobic003G286600 Sobic003G286600 Sobic001G025300--Sobic003G286600 Sobic001G025300--Sobic005G051200 Sobic001G317200 Sobic001G317200 Sobic001G025300--Sobic001G317200 Sobic001G025300--Sobic004G166700 Sobic006G099900 Sobic006G099900 Sobic001G025300--Sobic006G099900 Sobic001G070800 Sobic001G070800 Sobic001G025300--Sobic001G070800 Sobic005G069800 Sobic005G069800 Sobic004G022900--Sobic005G069800 Sobic001G487600 Sobic001G487600 Sobic004G022900--Sobic001G487600 Sobic005G070200 Sobic005G070200 Sobic004G022900--Sobic005G070200 Sobic004G022900--Sobic006G162100 Sobic005G069700 Sobic005G069700 Sobic004G022900--Sobic005G069700 Sobic004G316350 Sobic004G316350 Sobic004G022900--Sobic004G316350 Sobic001G242000 Sobic001G242000 Sobic004G022900--Sobic001G242000 Sobic004G022900--Sobic007G215600 Sobic004G022900--Sobic001G462700
Octagon: transcription factors


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