Gene annotation
Transcriptome id Sobic.010G016250.1
Synonym -
Functional annotation -
UniProt A0A1W0VR20
Pfam PF13966
Panther DB PTHR25952 PTHR25952:SF206
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G02650 : Ribonuclease H-like superfamily protein
RAP-DB (Rice) LOC_Os06g46610.1 : retrotransposon protein, putative, unclassified, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G003400 expressed protein -
2 Sobic.003G076001 - -
3 Sobic.001G471300 AIR12, putative, expressed -
4 Sobic.006G068300 RCN4 Centroradialis-like1 homologous to TFL1 gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed -
5 Sobic.002G109800 glycosyl hydrolase, putative, expressed K01183: chitinase
6 Sobic.002G109800 glycosyl hydrolase, putative, expressed K01183: chitinase
7 Sobic.002G109800 glycosyl hydrolase, putative, expressed K01183: chitinase
8 Sobic.002G109800 glycosyl hydrolase, putative, expressed K01183: chitinase
9 Sobic.002G109800 glycosyl hydrolase, putative, expressed K01183: chitinase
10 Sobic.002G109800 glycosyl hydrolase, putative, expressed K01183: chitinase
11 Sobic.007G106050 - -
12 Sobic.010G176101 - -
13 Sobic.003G211400 OsFBX313 - F-box domain containing protein, expressed -
14 Sobic.001G297966 - -
15 Sobic.005G177500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./middle senescence marker during developmental senescence(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed K01183: chitinase
16 Sobic.009G220250 - -
17 Sobic.008G184600 expressed protein -
18 Sobic.005G103650 - -
19 Sobic.001G123900 glucosyltransferase, putative, expressed -
20 Sobic.008G076300 male sterility protein, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase


Gene co-expression network
sample Sobic010G016250 Sobic010G016250 Sobic009G003400 Sobic009G003400 Sobic010G016250--Sobic009G003400 Sobic003G076001 Sobic003G076001 Sobic010G016250--Sobic003G076001 Sobic001G471300 Sobic001G471300 Sobic010G016250--Sobic001G471300 Sobic006G068300 Sobic006G068300 Sobic010G016250--Sobic006G068300 Sobic002G109800 Sobic002G109800 Sobic010G016250--Sobic002G109800 Sobic009G003400--Sobic003G076001 Sobic009G003400--Sobic010G016250 Sobic003G211400 Sobic003G211400 Sobic009G003400--Sobic003G211400 Sobic009G003400--Sobic002G109800 Sobic003G076001--Sobic009G003400 Sobic003G076001--Sobic003G211400 Sobic003G076001--Sobic010G016250 Sobic007G039500 Sobic007G039500 Sobic003G076001--Sobic007G039500 Sobic006G053900 Sobic006G053900 Sobic003G076001--Sobic006G053900 Sobic002G254000 Sobic002G254000 Sobic003G076001--Sobic002G254000 Sobic002G403833 Sobic002G403833 Sobic003G076001--Sobic002G403833 Sobic003G076001--Sobic002G109800 Sobic005G103650 Sobic005G103650 Sobic001G471300--Sobic005G103650 Sobic003G148300 Sobic003G148300 Sobic001G471300--Sobic003G148300 Sobic001G471300--Sobic006G068300 Sobic001G363400 Sobic001G363400 Sobic001G471300--Sobic001G363400 Sobic005G013500 Sobic005G013500 Sobic001G471300--Sobic005G013500 Sobic004G352000 Sobic004G352000 Sobic001G471300--Sobic004G352000 Sobic007G058400 Sobic007G058400 Sobic001G471300--Sobic007G058400 Sobic001G187500 Sobic001G187500 Sobic001G471300--Sobic001G187500 Sobic001G330200 Sobic001G330200 Sobic001G471300--Sobic001G330200 Sobic001G025101 Sobic001G025101 Sobic006G068300--Sobic001G025101 Sobic010G176101 Sobic010G176101 Sobic006G068300--Sobic010G176101 Sobic009G196400 Sobic009G196400 Sobic006G068300--Sobic009G196400 Sobic001G025300 Sobic001G025300 Sobic006G068300--Sobic001G025300 Sobic002G416600 Sobic002G416600 Sobic006G068300--Sobic002G416600 Sobic004G071650 Sobic004G071650 Sobic006G068300--Sobic004G071650 Sobic001G462700 Sobic001G462700 Sobic006G068300--Sobic001G462700 Sobic005G177500 Sobic005G177500 Sobic006G068300--Sobic005G177500 Sobic003G117600 Sobic003G117600 Sobic006G068300--Sobic003G117600 Sobic002G109800--Sobic002G109800 Sobic007G106050 Sobic007G106050 Sobic002G109800--Sobic007G106050 Sobic001G297966 Sobic001G297966 Sobic002G109800--Sobic001G297966 Sobic009G220250 Sobic009G220250 Sobic002G109800--Sobic009G220250 Sobic008G184600 Sobic008G184600 Sobic002G109800--Sobic008G184600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.