Gene annotation
Transcriptome id Sobic.006G068300.2,Sobic.006G068300.1
Synonym ATC, Sb06g015490
Functional annotation RCN4 Centroradialis-like1 homologous to TFL1 gene
contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed
UniProt A0A1Z5RDE2 , C5YFU0
Pfam PF01161
Panther DB PTHR11362 PTHR11362:SF39
NCBI CDD KOG3346; Phosphatidylethanolamine binding protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G27550 : centroradialis
RAP-DB (Rice) LOC_Os04g33570.1 : RCN4 Centroradialis-like1 homologous to TFL1 gene; contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed
MaizeGDB (Corn) Zm00025a011530 , Zm00025a055994
Brachypodium KQJ82499
Barley HORVU4Hr1G078770.3 , HORVU4Hr1G078770.2 , HORVU4Hr1G078770.1 , HORVU2Hr1G072750.5 , HORVU2Hr1G072750.4 , HORVU2Hr1G072750.6 , HORVU2Hr1G072750.1 , HORVU2Hr1G072750.3 , HORVU2Hr1G072750.2
Wheat TraesCS4A02G409200 , TraesCS4A02G409200 , TraesCS2D02G292000 , TraesCSU02G202000 , TraesCS2B02G310700 , TraesCS4D02G305800 , TraesCS4B02G307600
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G025101 - -
2 Sobic.010G176101 - -
3 Sobic.009G196400 expressed protein -
4 Sobic.001G025300 hydrolase, alpha/beta fold family domain containing protein, expressed -
5 Sobic.002G416600 peroxidase precursor, putative, expressed K00430: peroxidase
6 Sobic.004G071650 - -
7 Sobic.001G462700 expressed protein -
8 Sobic.005G177500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./middle senescence marker during developmental senescence(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed K01183: chitinase
9 Sobic.003G117600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@flowering promoting factor-like 1, putative, expressed -
10 Sobic.003G087300 nuclease PA3, putative, expressed -
11 Sobic.006G153100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
12 Sobic.005G179200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsWAK112d - OsWAK receptor-like protein kinase, expressed -
13 Sobic.005G063100 expressed protein -
14 Sobic.010G238900 oryzain beta chain precursor, putative, expressed -
15 Sobic.004G166700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"Beta-fructofuranosidase, cell wall Invertase 2 (Os)"(PubMedID : 27208977)@glycosyl hydrolases, putative, expressed K01193: INV, beta-fructofuranosidase
16 Sobic.010G084100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
17 Sobic.003G152100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxidase precursor, putative, expressed -
18 Sobic.006G039100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RALFL36 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
19 Sobic.007G141500 chorismate mutase, chloroplast precursor, putative, expressed K01850: chorismate mutase
20 Sobic.003G227300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WRKY11, expressed -


Gene co-expression network
sample Sobic006G068300 Sobic006G068300 Sobic001G025101 Sobic001G025101 Sobic006G068300--Sobic001G025101 Sobic010G176101 Sobic010G176101 Sobic006G068300--Sobic010G176101 Sobic009G196400 Sobic009G196400 Sobic006G068300--Sobic009G196400 Sobic001G025300 Sobic001G025300 Sobic006G068300--Sobic001G025300 Sobic002G416600 Sobic002G416600 Sobic006G068300--Sobic002G416600 Sobic004G071650 Sobic004G071650 Sobic006G068300--Sobic004G071650 Sobic001G462700 Sobic001G462700 Sobic006G068300--Sobic001G462700 Sobic005G177500 Sobic005G177500 Sobic006G068300--Sobic005G177500 Sobic003G117600 Sobic003G117600 Sobic006G068300--Sobic003G117600 Sobic001G025101--Sobic001G025300 Sobic001G025101--Sobic002G416600 Sobic003G088500 Sobic003G088500 Sobic001G025101--Sobic003G088500 Sobic005G051200 Sobic005G051200 Sobic001G025101--Sobic005G051200 Sobic003G087300 Sobic003G087300 Sobic001G025101--Sobic003G087300 Sobic004G166700 Sobic004G166700 Sobic001G025101--Sobic004G166700 Sobic004G245500 Sobic004G245500 Sobic001G025101--Sobic004G245500 Sobic010G044400 Sobic010G044400 Sobic001G025101--Sobic010G044400 Sobic003G345100 Sobic003G345100 Sobic001G025101--Sobic003G345100 Sobic010G176101--Sobic006G068300 Sobic010G176101--Sobic009G196400 Sobic010G176101--Sobic004G071650 Sobic001G471300 Sobic001G471300 Sobic010G176101--Sobic001G471300 Sobic008G076300 Sobic008G076300 Sobic010G176101--Sobic008G076300 Sobic001G333400 Sobic001G333400 Sobic010G176101--Sobic001G333400 Sobic002G044800 Sobic002G044800 Sobic010G176101--Sobic002G044800 Sobic010G016250 Sobic010G016250 Sobic010G176101--Sobic010G016250 Sobic010G176101--Sobic005G177500 Sobic001G444400 Sobic001G444400 Sobic009G196400--Sobic001G444400 Sobic002G139300 Sobic002G139300 Sobic009G196400--Sobic002G139300 Sobic006G153100 Sobic006G153100 Sobic009G196400--Sobic006G153100 Sobic002G421800 Sobic002G421800 Sobic009G196400--Sobic002G421800 Sobic009G196400--Sobic001G333400 Sobic009G106800 Sobic009G106800 Sobic009G196400--Sobic009G106800 Sobic004G240600 Sobic004G240600 Sobic009G196400--Sobic004G240600 Sobic009G196400--Sobic003G087300 Sobic007G141500 Sobic007G141500 Sobic009G196400--Sobic007G141500 Sobic001G025300--Sobic001G025101 Sobic001G025300--Sobic002G416600 Sobic002G183200 Sobic002G183200 Sobic001G025300--Sobic002G183200 Sobic003G286600 Sobic003G286600 Sobic001G025300--Sobic003G286600 Sobic001G025300--Sobic005G051200 Sobic001G317200 Sobic001G317200 Sobic001G025300--Sobic001G317200 Sobic001G025300--Sobic004G166700 Sobic006G099900 Sobic006G099900 Sobic001G025300--Sobic006G099900 Sobic001G070800 Sobic001G070800 Sobic001G025300--Sobic001G070800 Sobic002G416600--Sobic003G087300 Sobic002G416600--Sobic005G051200 Sobic002G416600--Sobic001G317200 Sobic002G416600--Sobic001G025300 Sobic002G416600--Sobic001G070800 Sobic002G416600--Sobic004G166700 Sobic008G050600 Sobic008G050600 Sobic002G416600--Sobic008G050600 Sobic001G252300 Sobic001G252300 Sobic002G416600--Sobic001G252300 Sobic010G239300 Sobic010G239300 Sobic002G416600--Sobic010G239300 Sobic010G084100 Sobic010G084100 Sobic004G071650--Sobic010G084100 Sobic010G084700 Sobic010G084700 Sobic004G071650--Sobic010G084700 Sobic003G116800 Sobic003G116800 Sobic004G071650--Sobic003G116800 Sobic005G045900 Sobic005G045900 Sobic004G071650--Sobic005G045900 Sobic004G071650--Sobic003G286600 Sobic001G348700 Sobic001G348700 Sobic004G071650--Sobic001G348700 Sobic004G221500 Sobic004G221500 Sobic004G071650--Sobic004G221500 Sobic005G206601 Sobic005G206601 Sobic004G071650--Sobic005G206601 Sobic001G487300 Sobic001G487300 Sobic004G071650--Sobic001G487300 Sobic002G247600 Sobic002G247600 Sobic001G462700--Sobic002G247600 Sobic001G325400 Sobic001G325400 Sobic001G462700--Sobic001G325400 Sobic006G039100 Sobic006G039100 Sobic001G462700--Sobic006G039100 Sobic009G111000 Sobic009G111000 Sobic001G462700--Sobic009G111000 Sobic007G204700 Sobic007G204700 Sobic001G462700--Sobic007G204700 Sobic001G462700--Sobic003G117600 Sobic010G008400 Sobic010G008400 Sobic001G462700--Sobic010G008400 Sobic001G331200 Sobic001G331200 Sobic001G462700--Sobic001G331200 Sobic004G046200 Sobic004G046200 Sobic001G462700--Sobic004G046200 Sobic005G177500--Sobic006G068300 Sobic005G177500--Sobic009G196400 Sobic005G177500--Sobic010G176101 Sobic005G177500--Sobic001G025101 Sobic005G177500--Sobic001G462700 Sobic001G243400 Sobic001G243400 Sobic005G177500--Sobic001G243400 Sobic006G162100 Sobic006G162100 Sobic005G177500--Sobic006G162100 Sobic005G177500--Sobic001G025300 Sobic004G022900 Sobic004G022900 Sobic005G177500--Sobic004G022900 Sobic006G277600 Sobic006G277600 Sobic003G117600--Sobic006G277600 Sobic003G117600--Sobic007G141500 Sobic005G063100 Sobic005G063100 Sobic003G117600--Sobic005G063100 Sobic006G092500 Sobic006G092500 Sobic003G117600--Sobic006G092500 Sobic003G117600--Sobic005G206601 Sobic003G117600--Sobic006G153100 Sobic003G117600--Sobic001G325400 Sobic002G354100 Sobic002G354100 Sobic003G117600--Sobic002G354100 Sobic005G091500 Sobic005G091500 Sobic003G117600--Sobic005G091500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.