Gene annotation
Transcriptome id Sobic.001G243400.1
Synonym Sb01g021540
Functional annotation glycine-rich cell wall structural protein 2 precursor, putative, expressed
UniProt C5X1F9
Pfam -
Panther DB PTHR33548
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os10g31540.1 : glycine-rich cell wall structural protein 2 precursor, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G346100 - -
2 Sobic.001G243500 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
3 Sobic.001G335600 RNA-binding protein-like, putative, expressed -
4 Sobic.001G331301 - -
5 Sobic.004G273400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oligopeptide transporter, putative, expressed -
6 Sobic.001G100700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@PIII5 - Proteinase inhibitor II family protein precursor, expressed -
7 Sobic.006G068300 RCN4 Centroradialis-like1 homologous to TFL1 gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed -
8 Sobic.005G213200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein kinase family protein, putative, expressed -
9 Sobic.010G176101 - -
10 Sobic.005G177500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./middle senescence marker during developmental senescence(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed K01183: chitinase
11 Sobic.008G010750 - -
12 Sobic.002G200300 no apical meristem protein, putative, expressed -
13 Sobic.008G076300 male sterility protein, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
14 Sobic.001G243600 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
15 Sobic.002G109800 glycosyl hydrolase, putative, expressed K01183: chitinase
16 Sobic.002G109800 glycosyl hydrolase, putative, expressed K01183: chitinase
17 Sobic.002G109800 glycosyl hydrolase, putative, expressed K01183: chitinase
18 Sobic.002G109800 glycosyl hydrolase, putative, expressed K01183: chitinase
19 Sobic.002G109800 glycosyl hydrolase, putative, expressed K01183: chitinase
20 Sobic.002G109800 glycosyl hydrolase, putative, expressed K01183: chitinase


Gene co-expression network
sample Sobic001G243400 Sobic001G243400 Sobic002G346100 Sobic002G346100 Sobic001G243400--Sobic002G346100 Sobic001G243500 Sobic001G243500 Sobic001G243400--Sobic001G243500 Sobic001G335600 Sobic001G335600 Sobic001G243400--Sobic001G335600 Sobic001G331301 Sobic001G331301 Sobic001G243400--Sobic001G331301 Sobic004G273400 Sobic004G273400 Sobic001G243400--Sobic004G273400 Sobic001G100700 Sobic001G100700 Sobic001G243400--Sobic001G100700 Sobic006G068300 Sobic006G068300 Sobic001G243400--Sobic006G068300 Sobic005G213200 Sobic005G213200 Sobic001G243400--Sobic005G213200 Sobic010G176101 Sobic010G176101 Sobic001G243400--Sobic010G176101 Sobic002G346100--Sobic001G243500 Sobic002G346100--Sobic001G243400 Sobic002G346100--Sobic004G273400 Sobic001G243600 Sobic001G243600 Sobic002G346100--Sobic001G243600 Sobic002G346100--Sobic001G100700 Sobic002G200300 Sobic002G200300 Sobic002G346100--Sobic002G200300 Sobic002G346100--Sobic005G213200 Sobic004G333150 Sobic004G333150 Sobic002G346100--Sobic004G333150 Sobic009G106800 Sobic009G106800 Sobic002G346100--Sobic009G106800 Sobic001G243500--Sobic004G273400 Sobic001G243500--Sobic001G243600 Sobic001G243500--Sobic001G100700 Sobic001G243500--Sobic005G213200 Sobic001G243500--Sobic002G346100 Sobic001G243500--Sobic009G106800 Sobic001G243500--Sobic001G243400 Sobic001G243500--Sobic002G200300 Sobic001G243500--Sobic001G331301 Sobic001G335600--Sobic001G331301 Sobic004G128400 Sobic004G128400 Sobic001G335600--Sobic004G128400 Sobic006G277550 Sobic006G277550 Sobic001G335600--Sobic006G277550 Sobic001G335600--Sobic001G243500 Sobic009G158700 Sobic009G158700 Sobic001G335600--Sobic009G158700 Sobic002G018500 Sobic002G018500 Sobic001G335600--Sobic002G018500 Sobic005G156600 Sobic005G156600 Sobic001G335600--Sobic005G156600 Sobic001G248500 Sobic001G248500 Sobic001G335600--Sobic001G248500 Sobic002G182400 Sobic002G182400 Sobic001G335600--Sobic002G182400 Sobic001G331301--Sobic004G128400 Sobic003G227300 Sobic003G227300 Sobic001G331301--Sobic003G227300 Sobic001G331301--Sobic001G335600 Sobic004G111800 Sobic004G111800 Sobic001G331301--Sobic004G111800 Sobic001G331301--Sobic005G213200 Sobic001G331301--Sobic001G243500 Sobic001G331301--Sobic009G106800 Sobic005G206601 Sobic005G206601 Sobic001G331301--Sobic005G206601 Sobic001G331301--Sobic006G277550 Sobic004G273400--Sobic001G243600 Sobic004G273400--Sobic001G243500 Sobic004G273400--Sobic001G100700 Sobic004G273400--Sobic005G213200 Sobic004G273400--Sobic009G106800 Sobic001G444400 Sobic001G444400 Sobic004G273400--Sobic001G444400 Sobic006G153100 Sobic006G153100 Sobic004G273400--Sobic006G153100 Sobic004G273400--Sobic004G333150 Sobic007G141500 Sobic007G141500 Sobic004G273400--Sobic007G141500 Sobic001G100700--Sobic005G213200 Sobic001G100700--Sobic001G243500 Sobic001G100700--Sobic001G444400 Sobic001G100700--Sobic001G243600 Sobic001G100700--Sobic009G106800 Sobic009G120000 Sobic009G120000 Sobic001G100700--Sobic009G120000 Sobic001G100700--Sobic004G273400 Sobic010G209900 Sobic010G209900 Sobic001G100700--Sobic010G209900 Sobic003G129000 Sobic003G129000 Sobic001G100700--Sobic003G129000 Sobic001G025101 Sobic001G025101 Sobic006G068300--Sobic001G025101 Sobic006G068300--Sobic010G176101 Sobic009G196400 Sobic009G196400 Sobic006G068300--Sobic009G196400 Sobic001G025300 Sobic001G025300 Sobic006G068300--Sobic001G025300 Sobic002G416600 Sobic002G416600 Sobic006G068300--Sobic002G416600 Sobic004G071650 Sobic004G071650 Sobic006G068300--Sobic004G071650 Sobic001G462700 Sobic001G462700 Sobic006G068300--Sobic001G462700 Sobic005G177500 Sobic005G177500 Sobic006G068300--Sobic005G177500 Sobic003G117600 Sobic003G117600 Sobic006G068300--Sobic003G117600 Sobic005G213200--Sobic001G100700 Sobic005G213200--Sobic001G243600 Sobic005G213200--Sobic001G243500 Sobic005G213200--Sobic009G120000 Sobic005G213200--Sobic009G106800 Sobic005G213200--Sobic001G444400 Sobic005G213200--Sobic004G273400 Sobic010G071900 Sobic010G071900 Sobic005G213200--Sobic010G071900 Sobic005G213200--Sobic010G209900 Sobic010G176101--Sobic006G068300 Sobic010G176101--Sobic009G196400 Sobic010G176101--Sobic004G071650 Sobic001G471300 Sobic001G471300 Sobic010G176101--Sobic001G471300 Sobic008G076300 Sobic008G076300 Sobic010G176101--Sobic008G076300 Sobic001G333400 Sobic001G333400 Sobic010G176101--Sobic001G333400 Sobic002G044800 Sobic002G044800 Sobic010G176101--Sobic002G044800 Sobic010G016250 Sobic010G016250 Sobic010G176101--Sobic010G016250 Sobic010G176101--Sobic005G177500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.