Gene annotation
Transcriptome id Sobic.001G243600.1
Synonym Sb01g021590
Functional annotation glycine-rich cell wall structural protein 2 precursor, putative, expressed
UniProt A0A1Z5S748
Pfam -
Panther DB PTHR33548 PTHR33548:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os10g31540.1 : glycine-rich cell wall structural protein 2 precursor, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G273400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oligopeptide transporter, putative, expressed -
2 Sobic.005G213200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein kinase family protein, putative, expressed -
3 Sobic.001G243500 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
4 Sobic.001G100700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@PIII5 - Proteinase inhibitor II family protein precursor, expressed -
5 Sobic.009G120000 - -
6 Sobic.002G375400 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
7 Sobic.009G106800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
8 Sobic.005G084600 ARGOS, putative, expressed -
9 Sobic.001G444400 peroxidase precursor, putative, expressed K00430: peroxidase
10 Sobic.007G141500 chorismate mutase, chloroplast precursor, putative, expressed K01850: chorismate mutase
11 Sobic.004G176600 no apical meristem protein, putative, expressed -
12 Sobic.006G153100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
13 Sobic.002G200300 no apical meristem protein, putative, expressed -
14 Sobic.010G209900 phospholipase D. Active site motif family protein, expressed K16860: phospholipase D3/4
15 Sobic.002G128300 MLA6 protein, putative, expressed K13457: RPM1, disease resistance protein RPM1
16 Sobic.007G148000 heat shock protein DnaJ, putative, expressed -
17 Sobic.003G240600 VQ domain containing protein, putative, expressed -
18 Sobic.001G348700 - -
19 Sobic.004G107700 expressed protein -
20 Sobic.003G087300 nuclease PA3, putative, expressed -


Gene co-expression network
sample Sobic001G243600 Sobic001G243600 Sobic004G273400 Sobic004G273400 Sobic001G243600--Sobic004G273400 Sobic005G213200 Sobic005G213200 Sobic001G243600--Sobic005G213200 Sobic001G243500 Sobic001G243500 Sobic001G243600--Sobic001G243500 Sobic001G100700 Sobic001G100700 Sobic001G243600--Sobic001G100700 Sobic009G120000 Sobic009G120000 Sobic001G243600--Sobic009G120000 Sobic002G375400 Sobic002G375400 Sobic001G243600--Sobic002G375400 Sobic009G106800 Sobic009G106800 Sobic001G243600--Sobic009G106800 Sobic005G084600 Sobic005G084600 Sobic001G243600--Sobic005G084600 Sobic001G444400 Sobic001G444400 Sobic001G243600--Sobic001G444400 Sobic004G273400--Sobic001G243600 Sobic004G273400--Sobic001G243500 Sobic004G273400--Sobic001G100700 Sobic004G273400--Sobic005G213200 Sobic004G273400--Sobic009G106800 Sobic004G273400--Sobic001G444400 Sobic006G153100 Sobic006G153100 Sobic004G273400--Sobic006G153100 Sobic004G333150 Sobic004G333150 Sobic004G273400--Sobic004G333150 Sobic007G141500 Sobic007G141500 Sobic004G273400--Sobic007G141500 Sobic005G213200--Sobic001G100700 Sobic005G213200--Sobic001G243600 Sobic005G213200--Sobic001G243500 Sobic005G213200--Sobic009G120000 Sobic005G213200--Sobic009G106800 Sobic005G213200--Sobic001G444400 Sobic005G213200--Sobic004G273400 Sobic010G071900 Sobic010G071900 Sobic005G213200--Sobic010G071900 Sobic010G209900 Sobic010G209900 Sobic005G213200--Sobic010G209900 Sobic001G243500--Sobic004G273400 Sobic001G243500--Sobic001G243600 Sobic001G243500--Sobic001G100700 Sobic001G243500--Sobic005G213200 Sobic002G346100 Sobic002G346100 Sobic001G243500--Sobic002G346100 Sobic001G243500--Sobic009G106800 Sobic001G243400 Sobic001G243400 Sobic001G243500--Sobic001G243400 Sobic002G200300 Sobic002G200300 Sobic001G243500--Sobic002G200300 Sobic001G331301 Sobic001G331301 Sobic001G243500--Sobic001G331301 Sobic001G100700--Sobic005G213200 Sobic001G100700--Sobic001G243500 Sobic001G100700--Sobic001G444400 Sobic001G100700--Sobic001G243600 Sobic001G100700--Sobic009G106800 Sobic001G100700--Sobic009G120000 Sobic001G100700--Sobic004G273400 Sobic001G100700--Sobic010G209900 Sobic003G129000 Sobic003G129000 Sobic001G100700--Sobic003G129000 Sobic004G166700 Sobic004G166700 Sobic009G120000--Sobic004G166700 Sobic009G120000--Sobic007G141500 Sobic005G051200 Sobic005G051200 Sobic009G120000--Sobic005G051200 Sobic001G317200 Sobic001G317200 Sobic009G120000--Sobic001G317200 Sobic009G120000--Sobic005G084600 Sobic003G117600 Sobic003G117600 Sobic009G120000--Sobic003G117600 Sobic006G092500 Sobic006G092500 Sobic009G120000--Sobic006G092500 Sobic009G120000--Sobic001G243600 Sobic009G120000--Sobic005G213200 Sobic004G176600 Sobic004G176600 Sobic002G375400--Sobic004G176600 Sobic004G107700 Sobic004G107700 Sobic002G375400--Sobic004G107700 Sobic010G185000 Sobic010G185000 Sobic002G375400--Sobic010G185000 Sobic005G206601 Sobic005G206601 Sobic002G375400--Sobic005G206601 Sobic003G437200 Sobic003G437200 Sobic002G375400--Sobic003G437200 Sobic009G072900 Sobic009G072900 Sobic002G375400--Sobic009G072900 Sobic003G417800 Sobic003G417800 Sobic002G375400--Sobic003G417800 Sobic001G403000 Sobic001G403000 Sobic002G375400--Sobic001G403000 Sobic004G348400 Sobic004G348400 Sobic002G375400--Sobic004G348400 Sobic009G106800--Sobic001G444400 Sobic010G084400 Sobic010G084400 Sobic009G106800--Sobic010G084400 Sobic009G196400 Sobic009G196400 Sobic009G106800--Sobic009G196400 Sobic009G106800--Sobic001G100700 Sobic004G111800 Sobic004G111800 Sobic009G106800--Sobic004G111800 Sobic009G106800--Sobic005G213200 Sobic009G106800--Sobic001G243600 Sobic003G252800 Sobic003G252800 Sobic009G106800--Sobic003G252800 Sobic009G106800--Sobic006G153100 Sobic005G084600--Sobic004G176600 Sobic001G339700 Sobic001G339700 Sobic005G084600--Sobic001G339700 Sobic005G084600--Sobic009G120000 Sobic008G032100 Sobic008G032100 Sobic005G084600--Sobic008G032100 Sobic005G084600--Sobic005G206601 Sobic005G084600--Sobic002G375400 Sobic010G009300 Sobic010G009300 Sobic005G084600--Sobic010G009300 Sobic005G084600--Sobic010G185000 Sobic005G084600--Sobic003G417800 Sobic001G444400--Sobic006G153100 Sobic001G444400--Sobic010G084400 Sobic001G444400--Sobic009G106800 Sobic001G444400--Sobic009G196400 Sobic001G444400--Sobic007G141500 Sobic001G444400--Sobic003G252800 Sobic001G444400--Sobic004G111800 Sobic001G444400--Sobic001G100700 Sobic003G426300 Sobic003G426300 Sobic001G444400--Sobic003G426300
Octagon: transcription factors


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