Gene annotation
Transcriptome id Sobic.004G273400.1
Synonym ATOPT4, Sb04g031070, OPT4
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
oligopeptide transporter, putative, expressed
UniProt C5Y0G3
Pfam PF03169
Panther DB PTHR22601 PTHR22601:SF11
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G64410 : oligopeptide transporter 4
RAP-DB (Rice) LOC_Os01g43940.1 : oligopeptide transporter, putative, expressed
MaizeGDB (Corn) Zm00025a032394 , Zm00025a021633 , Zm00025a032387 , Zm00025a032386 , Zm00025a032388
Brachypodium KQK00862
Barley HORVU2Hr1G102890.1 , HORVU0Hr1G025700.1 , HORVU0Hr1G025700.2 , HORVU0Hr1G025700.3 , HORVU6Hr1G067430.12 , HORVU6Hr1G067430.13 , HORVU6Hr1G067430.14 , HORVU6Hr1G067430.16 , HORVU6Hr1G067430.2 , HORVU6Hr1G067430.3 , HORVU6Hr1G067430.6 , HORVU6Hr1G067430.21 , HORVU6Hr1G067430.7 , HORVU2Hr1G102890.2
Wheat TraesCS2D02G443600 , TraesCS2D02G443600 , TraesCS2B02G624600 , TraesCS2A02G562100 , TraesCS6B02G293200 , TraesCS6B02G293100 , TraesCS6D02G248800 , TraesCS7D02G099500 , TraesCS6D02G248700 , TraesCS2A02G444400 , TraesCS2B02G465500 , TraesCS6A02G265800 , TraesCS6A02G265900 , TraesCS7A02G105300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G243600 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
2 Sobic.001G243500 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
3 Sobic.001G100700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@PIII5 - Proteinase inhibitor II family protein precursor, expressed -
4 Sobic.005G213200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein kinase family protein, putative, expressed -
5 Sobic.009G106800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
6 Sobic.001G444400 peroxidase precursor, putative, expressed K00430: peroxidase
7 Sobic.006G153100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
8 Sobic.004G333150 - -
9 Sobic.007G141500 chorismate mutase, chloroplast precursor, putative, expressed K01850: chorismate mutase
10 Sobic.003G087300 nuclease PA3, putative, expressed -
11 Sobic.009G120000 - -
12 Sobic.002G421800 Up-reguralion under drought(PubMedID : 24916767)@homeobox domain containing protein, expressed -
13 Sobic.009G196400 expressed protein -
14 Sobic.010G052700 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA20 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
15 Sobic.005G084600 ARGOS, putative, expressed -
16 Sobic.010G209900 phospholipase D. Active site motif family protein, expressed K16860: phospholipase D3/4
17 Sobic.002G416600 peroxidase precursor, putative, expressed K00430: peroxidase
18 Sobic.003G436800 peroxidase precursor, putative, expressed K00430: peroxidase
19 Sobic.005G203100 tropinone reductase 2, putative, expressed K08081: tropinone reductase I
20 Sobic.001G339700 expressed protein -


Gene co-expression network
sample Sobic004G273400 Sobic004G273400 Sobic001G243600 Sobic001G243600 Sobic004G273400--Sobic001G243600 Sobic001G243500 Sobic001G243500 Sobic004G273400--Sobic001G243500 Sobic001G100700 Sobic001G100700 Sobic004G273400--Sobic001G100700 Sobic005G213200 Sobic005G213200 Sobic004G273400--Sobic005G213200 Sobic009G106800 Sobic009G106800 Sobic004G273400--Sobic009G106800 Sobic001G444400 Sobic001G444400 Sobic004G273400--Sobic001G444400 Sobic006G153100 Sobic006G153100 Sobic004G273400--Sobic006G153100 Sobic004G333150 Sobic004G333150 Sobic004G273400--Sobic004G333150 Sobic007G141500 Sobic007G141500 Sobic004G273400--Sobic007G141500 Sobic001G243600--Sobic004G273400 Sobic001G243600--Sobic005G213200 Sobic001G243600--Sobic001G243500 Sobic001G243600--Sobic001G100700 Sobic009G120000 Sobic009G120000 Sobic001G243600--Sobic009G120000 Sobic002G375400 Sobic002G375400 Sobic001G243600--Sobic002G375400 Sobic001G243600--Sobic009G106800 Sobic005G084600 Sobic005G084600 Sobic001G243600--Sobic005G084600 Sobic001G243600--Sobic001G444400 Sobic001G243500--Sobic004G273400 Sobic001G243500--Sobic001G243600 Sobic001G243500--Sobic001G100700 Sobic001G243500--Sobic005G213200 Sobic002G346100 Sobic002G346100 Sobic001G243500--Sobic002G346100 Sobic001G243500--Sobic009G106800 Sobic001G243400 Sobic001G243400 Sobic001G243500--Sobic001G243400 Sobic002G200300 Sobic002G200300 Sobic001G243500--Sobic002G200300 Sobic001G331301 Sobic001G331301 Sobic001G243500--Sobic001G331301 Sobic001G100700--Sobic005G213200 Sobic001G100700--Sobic001G243500 Sobic001G100700--Sobic001G444400 Sobic001G100700--Sobic001G243600 Sobic001G100700--Sobic009G106800 Sobic001G100700--Sobic009G120000 Sobic001G100700--Sobic004G273400 Sobic010G209900 Sobic010G209900 Sobic001G100700--Sobic010G209900 Sobic003G129000 Sobic003G129000 Sobic001G100700--Sobic003G129000 Sobic005G213200--Sobic001G100700 Sobic005G213200--Sobic001G243600 Sobic005G213200--Sobic001G243500 Sobic005G213200--Sobic009G120000 Sobic005G213200--Sobic009G106800 Sobic005G213200--Sobic001G444400 Sobic005G213200--Sobic004G273400 Sobic010G071900 Sobic010G071900 Sobic005G213200--Sobic010G071900 Sobic005G213200--Sobic010G209900 Sobic009G106800--Sobic001G444400 Sobic010G084400 Sobic010G084400 Sobic009G106800--Sobic010G084400 Sobic009G196400 Sobic009G196400 Sobic009G106800--Sobic009G196400 Sobic009G106800--Sobic001G100700 Sobic004G111800 Sobic004G111800 Sobic009G106800--Sobic004G111800 Sobic009G106800--Sobic005G213200 Sobic009G106800--Sobic001G243600 Sobic003G252800 Sobic003G252800 Sobic009G106800--Sobic003G252800 Sobic009G106800--Sobic006G153100 Sobic001G444400--Sobic006G153100 Sobic001G444400--Sobic010G084400 Sobic001G444400--Sobic009G106800 Sobic001G444400--Sobic009G196400 Sobic001G444400--Sobic007G141500 Sobic001G444400--Sobic003G252800 Sobic001G444400--Sobic004G111800 Sobic001G444400--Sobic001G100700 Sobic003G426300 Sobic003G426300 Sobic001G444400--Sobic003G426300 Sobic006G153100--Sobic001G444400 Sobic006G153100--Sobic007G141500 Sobic003G117600 Sobic003G117600 Sobic006G153100--Sobic003G117600 Sobic002G416600 Sobic002G416600 Sobic006G153100--Sobic002G416600 Sobic006G153100--Sobic010G084400 Sobic005G179200 Sobic005G179200 Sobic006G153100--Sobic005G179200 Sobic006G153100--Sobic003G252800 Sobic002G199650 Sobic002G199650 Sobic006G153100--Sobic002G199650 Sobic006G153100--Sobic009G196400 Sobic004G240600 Sobic004G240600 Sobic004G333150--Sobic004G240600 Sobic010G052700 Sobic010G052700 Sobic004G333150--Sobic010G052700 Sobic003G087300 Sobic003G087300 Sobic004G333150--Sobic003G087300 Sobic004G333150--Sobic009G106800 Sobic005G203100 Sobic005G203100 Sobic004G333150--Sobic005G203100 Sobic004G333150--Sobic004G273400 Sobic002G421800 Sobic002G421800 Sobic004G333150--Sobic002G421800 Sobic004G333150--Sobic009G196400 Sobic004G333150--Sobic001G100700 Sobic007G141500--Sobic003G117600 Sobic007G141500--Sobic006G153100 Sobic007G141500--Sobic003G087300 Sobic007G141500--Sobic002G416600 Sobic002G125700 Sobic002G125700 Sobic007G141500--Sobic002G125700 Sobic004G166700 Sobic004G166700 Sobic007G141500--Sobic004G166700 Sobic007G141500--Sobic001G444400 Sobic001G325400 Sobic001G325400 Sobic007G141500--Sobic001G325400 Sobic007G141500--Sobic010G052700
Octagon: transcription factors


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