Gene annotation
Transcriptome id Sobic.002G421800.2,Sobic.002G421800.1
Synonym HB-3, Sb02g043300, WOX9, STIP
Functional annotation Up-reguralion under drought (PubMedID : 24916767)
homeobox domain containing protein, expressed
UniProt C5X5N0 , A0A1W0W820
Pfam PF00046
Panther DB PTHR24326 PTHR24326:SF280
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT3G03660 : WUSCHEL related homeobox 11
RAP-DB (Rice) LOC_Os07g48560.1 : homeobox domain containing protein, expressed
MaizeGDB (Corn) Zm00025a049196 , Zm00025a038759 , Zm00025a054984 , Zm00025a028123 , Zm00025a044576 , Zm00025a052470 , Zm00025a002274
Brachypodium KQK21876 , KQK14583 , KQJ95743 , KQK04862 , KQK09100
Barley HORVU2Hr1G017270.9 , HORVU2Hr1G017270.8 , HORVU3Hr1G013330.1 , HORVU2Hr1G017270.3 , HORVU2Hr1G017270.2 , HORVU2Hr1G017270.1 , HORVU2Hr1G017270.7 , HORVU1Hr1G087950.1 , HORVU1Hr1G087950.2 , HORVU2Hr1G017270.4 , HORVU3Hr1G013290.1 , HORVU3Hr1G013290.2 , HORVU3Hr1G013290.3 , HORVU2Hr1G017270.5 , HORVU2Hr1G017270.6 , HORVU4Hr1G051530.8 , HORVU4Hr1G051530.9 , HORVU4Hr1G051530.2 , HORVU4Hr1G051530.3 , HORVU4Hr1G051530.4 , HORVU4Hr1G051530.5 , HORVU4Hr1G051530.6
Wheat TraesCS4B02G174400 , TraesCS3B02G272200 , TraesCS2A02G100700 , TraesCS4A02G130200 , TraesCS2D02G100200 , TraesCS1D02G406900 , TraesCS3A02G247200 , TraesCS3B02G087800 , TraesCS3D02G244300 , TraesCS1A02G399400 , TraesCS2B02G117900 , TraesCS1B02G427400 , TraesCS3A02G073500 , TraesCS4D02G176400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G199650 - -
2 Sobic.001G444400 peroxidase precursor, putative, expressed K00430: peroxidase
3 Sobic.009G196400 expressed protein -
4 Sobic.007G141500 chorismate mutase, chloroplast precursor, putative, expressed K01850: chorismate mutase
5 Sobic.003G087300 nuclease PA3, putative, expressed -
6 Sobic.006G153100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
7 Sobic.010G052700 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA20 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
8 Sobic.002G416600 peroxidase precursor, putative, expressed K00430: peroxidase
9 Sobic.001G333400 SCP-like extracellular protein, expressed -
10 Sobic.003G129000 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
11 Sobic.004G273400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oligopeptide transporter, putative, expressed -
12 Sobic.009G106800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
13 Sobic.002G183200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
14 Sobic.010G084400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
15 Sobic.003G117600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@flowering promoting factor-like 1, putative, expressed -
16 Sobic.004G333150 - -
17 Sobic.005G091500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@permease domain containing protein, putative, expressed K06901: putative MFS transporter, AGZA family, xanthine/uracil permease
18 Sobic.001G070800 expressed protein -
19 Sobic.001G100700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@PIII5 - Proteinase inhibitor II family protein precursor, expressed -
20 Sobic.005G011200 peroxidase precursor, putative, expressed K00430: peroxidase


Gene co-expression network
sample Sobic002G421800 Sobic002G421800 Sobic002G199650 Sobic002G199650 Sobic002G421800--Sobic002G199650 Sobic001G444400 Sobic001G444400 Sobic002G421800--Sobic001G444400 Sobic009G196400 Sobic009G196400 Sobic002G421800--Sobic009G196400 Sobic007G141500 Sobic007G141500 Sobic002G421800--Sobic007G141500 Sobic003G087300 Sobic003G087300 Sobic002G421800--Sobic003G087300 Sobic006G153100 Sobic006G153100 Sobic002G421800--Sobic006G153100 Sobic010G052700 Sobic010G052700 Sobic002G421800--Sobic010G052700 Sobic002G416600 Sobic002G416600 Sobic002G421800--Sobic002G416600 Sobic001G333400 Sobic001G333400 Sobic002G421800--Sobic001G333400 Sobic006G099900 Sobic006G099900 Sobic002G199650--Sobic006G099900 Sobic003G252800 Sobic003G252800 Sobic002G199650--Sobic003G252800 Sobic005G091500 Sobic005G091500 Sobic002G199650--Sobic005G091500 Sobic010G084400 Sobic010G084400 Sobic002G199650--Sobic010G084400 Sobic003G286600 Sobic003G286600 Sobic002G199650--Sobic003G286600 Sobic002G199650--Sobic006G153100 Sobic001G317200 Sobic001G317200 Sobic002G199650--Sobic001G317200 Sobic002G183200 Sobic002G183200 Sobic002G199650--Sobic002G183200 Sobic001G070800 Sobic001G070800 Sobic002G199650--Sobic001G070800 Sobic001G444400--Sobic006G153100 Sobic001G444400--Sobic010G084400 Sobic009G106800 Sobic009G106800 Sobic001G444400--Sobic009G106800 Sobic001G444400--Sobic009G196400 Sobic001G444400--Sobic007G141500 Sobic001G444400--Sobic003G252800 Sobic004G111800 Sobic004G111800 Sobic001G444400--Sobic004G111800 Sobic001G100700 Sobic001G100700 Sobic001G444400--Sobic001G100700 Sobic003G426300 Sobic003G426300 Sobic001G444400--Sobic003G426300 Sobic009G196400--Sobic001G444400 Sobic002G139300 Sobic002G139300 Sobic009G196400--Sobic002G139300 Sobic009G196400--Sobic006G153100 Sobic009G196400--Sobic002G421800 Sobic009G196400--Sobic001G333400 Sobic009G196400--Sobic009G106800 Sobic004G240600 Sobic004G240600 Sobic009G196400--Sobic004G240600 Sobic009G196400--Sobic003G087300 Sobic009G196400--Sobic007G141500 Sobic003G117600 Sobic003G117600 Sobic007G141500--Sobic003G117600 Sobic007G141500--Sobic006G153100 Sobic007G141500--Sobic003G087300 Sobic007G141500--Sobic002G416600 Sobic002G125700 Sobic002G125700 Sobic007G141500--Sobic002G125700 Sobic004G166700 Sobic004G166700 Sobic007G141500--Sobic004G166700 Sobic007G141500--Sobic001G444400 Sobic001G325400 Sobic001G325400 Sobic007G141500--Sobic001G325400 Sobic007G141500--Sobic010G052700 Sobic003G087300--Sobic002G416600 Sobic003G087300--Sobic010G052700 Sobic010G239300 Sobic010G239300 Sobic003G087300--Sobic010G239300 Sobic003G087300--Sobic007G141500 Sobic006G039100 Sobic006G039100 Sobic003G087300--Sobic006G039100 Sobic003G087300--Sobic004G166700 Sobic009G231000 Sobic009G231000 Sobic003G087300--Sobic009G231000 Sobic003G087300--Sobic002G125700 Sobic001G252300 Sobic001G252300 Sobic003G087300--Sobic001G252300 Sobic006G153100--Sobic001G444400 Sobic006G153100--Sobic007G141500 Sobic006G153100--Sobic003G117600 Sobic006G153100--Sobic002G416600 Sobic006G153100--Sobic010G084400 Sobic005G179200 Sobic005G179200 Sobic006G153100--Sobic005G179200 Sobic006G153100--Sobic003G252800 Sobic006G153100--Sobic002G199650 Sobic006G153100--Sobic009G196400 Sobic001G503100 Sobic001G503100 Sobic010G052700--Sobic001G503100 Sobic010G052700--Sobic003G087300 Sobic010G052700--Sobic001G333400 Sobic003G280200 Sobic003G280200 Sobic010G052700--Sobic003G280200 Sobic010G052700--Sobic007G141500 Sobic005G011200 Sobic005G011200 Sobic010G052700--Sobic005G011200 Sobic003G364000 Sobic003G364000 Sobic010G052700--Sobic003G364000 Sobic002G004900 Sobic002G004900 Sobic010G052700--Sobic002G004900 Sobic010G052700--Sobic002G125700 Sobic002G416600--Sobic003G087300 Sobic005G051200 Sobic005G051200 Sobic002G416600--Sobic005G051200 Sobic002G416600--Sobic001G317200 Sobic001G025300 Sobic001G025300 Sobic002G416600--Sobic001G025300 Sobic002G416600--Sobic001G070800 Sobic002G416600--Sobic004G166700 Sobic008G050600 Sobic008G050600 Sobic002G416600--Sobic008G050600 Sobic002G416600--Sobic001G252300 Sobic002G416600--Sobic010G239300 Sobic001G333400--Sobic005G011200 Sobic001G333400--Sobic010G052700 Sobic002G247600 Sobic002G247600 Sobic001G333400--Sobic002G247600 Sobic001G333400--Sobic007G141500 Sobic001G333400--Sobic001G503100 Sobic001G333400--Sobic002G004900 Sobic006G125100 Sobic006G125100 Sobic001G333400--Sobic006G125100 Sobic002G336700 Sobic002G336700 Sobic001G333400--Sobic002G336700 Sobic001G187200 Sobic001G187200 Sobic001G333400--Sobic001G187200
Octagon: transcription factors


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