Gene annotation
Transcriptome id Sobic.009G106800.1
Synonym Sb09g017220
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
MATE efflux family protein, putative, expressed
UniProt A0A1B6P7Q1
Pfam PF01554
Panther DB PTHR11206 PTHR11206:SF176
NCBI CDD KOG1347; Uncharacterized membrane protein, predicted efflux pump
KEGG Orthology K03327; TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
Gene Ontology GO:0016020; membrane GO:0015297antiporter activity GO:0006855drug transmembrane transport


Orthologs (automatic annotation)
TAIR AT5G52450 : MATE efflux family protein
RAP-DB (Rice) LOC_Os10g20450.1 : MATE efflux family protein, putative, expressed
MaizeGDB (Corn) Zm00025a043408 , Zm00025a043409 , Zm00025a019761 , Zm00025a006950
Brachypodium PNT65259 , KQJ96399 , KQJ96398 , KQK04934 , KQK04933 , KQJ96397 , KQJ91725 , KQJ96396 , PNT65260
Barley HORVU3Hr1G014320.8 , HORVU3Hr1G014320.5 , HORVU3Hr1G014320.7 , HORVU3Hr1G014320.6 , HORVU3Hr1G014320.1 , HORVU3Hr1G014320.3 , HORVU3Hr1G014320.2 , HORVU3Hr1G021970.1 , HORVU3Hr1G021970.2 , HORVU3Hr1G021970.3 , HORVU3Hr1G021970.4 , HORVU3Hr1G021970.5 , HORVU3Hr1G021970.6 , HORVU3Hr1G021970.7 , HORVU3Hr1G021970.8 , HORVU3Hr1G021970.9 , HORVU7Hr1G047070.1 , HORVU0Hr1G022350.3 , HORVU7Hr1G047070.3 , HORVU0Hr1G022350.1 , HORVU7Hr1G047070.5 , HORVU0Hr1G022350.4 , HORVU7Hr1G047070.6 , HORVU7Hr1G047070.9 , HORVU7Hr1G047070.8 , HORVU3Hr1G021970.12 , HORVU3Hr1G021970.13 , HORVU3Hr1G021970.11 , HORVU3Hr1G021970.16 , HORVU3Hr1G021970.17 , HORVU3Hr1G021970.14 , HORVU3Hr1G021970.15 , HORVU7Hr1G047070.15 , HORVU7Hr1G047070.14 , HORVU7Hr1G047070.17 , HORVU7Hr1G047070.16 , HORVU7Hr1G047070.11 , HORVU7Hr1G047070.10 , HORVU7Hr1G047070.13 , HORVU7Hr1G047070.12 , HORVU7Hr1G047070.19 , HORVU7Hr1G047070.18 , HORVU1Hr1G080850.10 , HORVU1Hr1G080850.11 , HORVU1Hr1G080850.8 , HORVU1Hr1G080850.9 , HORVU1Hr1G080850.4 , HORVU1Hr1G080850.5 , HORVU1Hr1G080850.6 , HORVU1Hr1G080850.7 , HORVU1Hr1G080850.1 , HORVU1Hr1G080850.2 , HORVU1Hr1G080850.3 , HORVU0Hr1G022350.2 , HORVU7Hr1G047070.2 , HORVU0Hr1G022350.6 , HORVU7Hr1G047070.4 , HORVU7Hr1G047070.7 , HORVU0Hr1G022350.5
Wheat TraesCS7A02G497300 , TraesCS7A02G033200 , TraesCS7D02G460200 , TraesCS7D02G460200 , TraesCS7D02G460200 , TraesCS5B02G408500 , TraesCS7D02G484500 , TraesCS7D02G230800 , TraesCS3B02G039300 , TraesCS3A02G044500 , TraesCS7A02G494300 , TraesCS7B02G196100 , TraesCS7B02G196200 , TraesCS3A02G044500 , TraesCS7B02G400500 , TraesCS7A02G473200 , TraesCS3D02G036400 , TraesCS7B02G374500 , TraesCS7D02G481500 , TraesCS5D02G413800 , TraesCS7A02G230200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G444400 peroxidase precursor, putative, expressed K00430: peroxidase
2 Sobic.010G084400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
3 Sobic.009G196400 expressed protein -
4 Sobic.001G100700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@PIII5 - Proteinase inhibitor II family protein precursor, expressed -
5 Sobic.004G111800 VQ domain containing protein, putative, expressed -
6 Sobic.005G213200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein kinase family protein, putative, expressed -
7 Sobic.001G243600 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
8 Sobic.003G252800 hypothetical protein -
9 Sobic.006G153100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
10 Sobic.001G243500 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
11 Sobic.004G273400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oligopeptide transporter, putative, expressed -
12 Sobic.009G128700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
13 Sobic.004G333150 - -
14 Sobic.010G239300 oryzain beta chain precursor, putative, expressed -
15 Sobic.010G052700 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA20 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
16 Sobic.003G426300 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
17 Sobic.007G141500 chorismate mutase, chloroplast precursor, putative, expressed K01850: chorismate mutase
18 Sobic.005G206601 - -
19 Sobic.001G348700 - -
20 Sobic.002G421800 Up-reguralion under drought(PubMedID : 24916767)@homeobox domain containing protein, expressed -


Gene co-expression network
sample Sobic009G106800 Sobic009G106800 Sobic001G444400 Sobic001G444400 Sobic009G106800--Sobic001G444400 Sobic010G084400 Sobic010G084400 Sobic009G106800--Sobic010G084400 Sobic009G196400 Sobic009G196400 Sobic009G106800--Sobic009G196400 Sobic001G100700 Sobic001G100700 Sobic009G106800--Sobic001G100700 Sobic004G111800 Sobic004G111800 Sobic009G106800--Sobic004G111800 Sobic005G213200 Sobic005G213200 Sobic009G106800--Sobic005G213200 Sobic001G243600 Sobic001G243600 Sobic009G106800--Sobic001G243600 Sobic003G252800 Sobic003G252800 Sobic009G106800--Sobic003G252800 Sobic006G153100 Sobic006G153100 Sobic009G106800--Sobic006G153100 Sobic001G444400--Sobic006G153100 Sobic001G444400--Sobic010G084400 Sobic001G444400--Sobic009G106800 Sobic001G444400--Sobic009G196400 Sobic007G141500 Sobic007G141500 Sobic001G444400--Sobic007G141500 Sobic001G444400--Sobic003G252800 Sobic001G444400--Sobic004G111800 Sobic001G444400--Sobic001G100700 Sobic003G426300 Sobic003G426300 Sobic001G444400--Sobic003G426300 Sobic010G084400--Sobic003G252800 Sobic005G101800 Sobic005G101800 Sobic010G084400--Sobic005G101800 Sobic006G099900 Sobic006G099900 Sobic010G084400--Sobic006G099900 Sobic001G317200 Sobic001G317200 Sobic010G084400--Sobic001G317200 Sobic009G128700 Sobic009G128700 Sobic010G084400--Sobic009G128700 Sobic007G227300 Sobic007G227300 Sobic010G084400--Sobic007G227300 Sobic010G117900 Sobic010G117900 Sobic010G084400--Sobic010G117900 Sobic010G239300 Sobic010G239300 Sobic010G084400--Sobic010G239300 Sobic004G189400 Sobic004G189400 Sobic010G084400--Sobic004G189400 Sobic009G196400--Sobic001G444400 Sobic002G139300 Sobic002G139300 Sobic009G196400--Sobic002G139300 Sobic009G196400--Sobic006G153100 Sobic002G421800 Sobic002G421800 Sobic009G196400--Sobic002G421800 Sobic001G333400 Sobic001G333400 Sobic009G196400--Sobic001G333400 Sobic009G196400--Sobic009G106800 Sobic004G240600 Sobic004G240600 Sobic009G196400--Sobic004G240600 Sobic003G087300 Sobic003G087300 Sobic009G196400--Sobic003G087300 Sobic009G196400--Sobic007G141500 Sobic001G100700--Sobic005G213200 Sobic001G243500 Sobic001G243500 Sobic001G100700--Sobic001G243500 Sobic001G100700--Sobic001G444400 Sobic001G100700--Sobic001G243600 Sobic001G100700--Sobic009G106800 Sobic009G120000 Sobic009G120000 Sobic001G100700--Sobic009G120000 Sobic004G273400 Sobic004G273400 Sobic001G100700--Sobic004G273400 Sobic010G209900 Sobic010G209900 Sobic001G100700--Sobic010G209900 Sobic003G129000 Sobic003G129000 Sobic001G100700--Sobic003G129000 Sobic004G111800--Sobic001G444400 Sobic004G111800--Sobic010G084400 Sobic004G111800--Sobic006G153100 Sobic004G111800--Sobic009G106800 Sobic004G111800--Sobic003G252800 Sobic004G111800--Sobic005G101800 Sobic005G206601 Sobic005G206601 Sobic004G111800--Sobic005G206601 Sobic001G348700 Sobic001G348700 Sobic004G111800--Sobic001G348700 Sobic001G339700 Sobic001G339700 Sobic004G111800--Sobic001G339700 Sobic005G213200--Sobic001G100700 Sobic005G213200--Sobic001G243600 Sobic005G213200--Sobic001G243500 Sobic005G213200--Sobic009G120000 Sobic005G213200--Sobic009G106800 Sobic005G213200--Sobic001G444400 Sobic005G213200--Sobic004G273400 Sobic010G071900 Sobic010G071900 Sobic005G213200--Sobic010G071900 Sobic005G213200--Sobic010G209900 Sobic001G243600--Sobic004G273400 Sobic001G243600--Sobic005G213200 Sobic001G243600--Sobic001G243500 Sobic001G243600--Sobic001G100700 Sobic001G243600--Sobic009G120000 Sobic002G375400 Sobic002G375400 Sobic001G243600--Sobic002G375400 Sobic001G243600--Sobic009G106800 Sobic005G084600 Sobic005G084600 Sobic001G243600--Sobic005G084600 Sobic001G243600--Sobic001G444400 Sobic003G252800--Sobic006G099900 Sobic003G252800--Sobic010G084400 Sobic003G252800--Sobic001G348700 Sobic003G252800--Sobic001G317200 Sobic003G252800--Sobic005G101800 Sobic003G252800--Sobic007G227300 Sobic003G252800--Sobic010G117900 Sobic003G252800--Sobic009G128700 Sobic004G221500 Sobic004G221500 Sobic003G252800--Sobic004G221500 Sobic006G153100--Sobic001G444400 Sobic006G153100--Sobic007G141500 Sobic003G117600 Sobic003G117600 Sobic006G153100--Sobic003G117600 Sobic002G416600 Sobic002G416600 Sobic006G153100--Sobic002G416600 Sobic006G153100--Sobic010G084400 Sobic005G179200 Sobic005G179200 Sobic006G153100--Sobic005G179200 Sobic006G153100--Sobic003G252800 Sobic002G199650 Sobic002G199650 Sobic006G153100--Sobic002G199650 Sobic006G153100--Sobic009G196400
Octagon: transcription factors


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