Gene annotation
Transcriptome id Sobic.001G335600.1
Synonym Sb01g032390
Functional annotation RNA-binding protein-like, putative, expressed
UniProt A0A1B6QMI6
Pfam PF02136
Panther DB PTHR10693 PTHR10693:SF25
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006810; transport GO:0005622intracellular


Orthologs (automatic annotation)
TAIR AT5G60980 : Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain
RAP-DB (Rice) LOC_Os03g30550.1 : RNA-binding protein-like, putative, expressed
MaizeGDB (Corn) Zm00025a052188
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G331301 - -
2 Sobic.004G128400 O-methyltransferase, putative, expressed -
3 Sobic.006G277550 - K00430: peroxidase
4 Sobic.001G243500 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
5 Sobic.009G158700 - -
6 Sobic.002G018500 - -
7 Sobic.005G156600 UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed K08237: hydroquinone glucosyltransferase
8 Sobic.001G248500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Glutathione reductases(PubMedID : 23783412)@glutathione reductase, putative, expressed K00383: GSR, glutathione reductase (NADPH)
9 Sobic.002G182400 - -
10 Sobic.001G243400 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
11 Sobic.005G213200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein kinase family protein, putative, expressed -
12 Sobic.002G182500 nucleic acid binding protein, putative, expressed -
13 Sobic.001G100700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@PIII5 - Proteinase inhibitor II family protein precursor, expressed -
14 Sobic.002G163100 expressed protein -
15 Sobic.009G106800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
16 Sobic.006G036500 peptidyl-prolyl cis-trans isomerase, chloroplast precursor, putative, expressed -
17 Sobic.001G320400 lysM domain containing protein, putative, expressed -
18 Sobic.004G111800 VQ domain containing protein, putative, expressed -
19 Sobic.007G148000 heat shock protein DnaJ, putative, expressed -
20 Sobic.008G044500 zinc finger superfamily protein("PubMedID : 26759170,PubMedID : 24597475")@expressed protein -


Gene co-expression network
sample Sobic001G335600 Sobic001G335600 Sobic001G331301 Sobic001G331301 Sobic001G335600--Sobic001G331301 Sobic004G128400 Sobic004G128400 Sobic001G335600--Sobic004G128400 Sobic006G277550 Sobic006G277550 Sobic001G335600--Sobic006G277550 Sobic001G243500 Sobic001G243500 Sobic001G335600--Sobic001G243500 Sobic009G158700 Sobic009G158700 Sobic001G335600--Sobic009G158700 Sobic002G018500 Sobic002G018500 Sobic001G335600--Sobic002G018500 Sobic005G156600 Sobic005G156600 Sobic001G335600--Sobic005G156600 Sobic001G248500 Sobic001G248500 Sobic001G335600--Sobic001G248500 Sobic002G182400 Sobic002G182400 Sobic001G335600--Sobic002G182400 Sobic001G331301--Sobic004G128400 Sobic003G227300 Sobic003G227300 Sobic001G331301--Sobic003G227300 Sobic001G331301--Sobic001G335600 Sobic004G111800 Sobic004G111800 Sobic001G331301--Sobic004G111800 Sobic005G213200 Sobic005G213200 Sobic001G331301--Sobic005G213200 Sobic001G331301--Sobic001G243500 Sobic009G106800 Sobic009G106800 Sobic001G331301--Sobic009G106800 Sobic005G206601 Sobic005G206601 Sobic001G331301--Sobic005G206601 Sobic001G331301--Sobic006G277550 Sobic001G231600 Sobic001G231600 Sobic004G128400--Sobic001G231600 Sobic002G182500 Sobic002G182500 Sobic004G128400--Sobic002G182500 Sobic001G320400 Sobic001G320400 Sobic004G128400--Sobic001G320400 Sobic004G128400--Sobic001G331301 Sobic007G135201 Sobic007G135201 Sobic004G128400--Sobic007G135201 Sobic001G495164 Sobic001G495164 Sobic004G128400--Sobic001G495164 Sobic010G117900 Sobic010G117900 Sobic004G128400--Sobic010G117900 Sobic007G067600 Sobic007G067600 Sobic004G128400--Sobic007G067600 Sobic010G084700 Sobic010G084700 Sobic004G128400--Sobic010G084700 Sobic009G072900 Sobic009G072900 Sobic006G277550--Sobic009G072900 Sobic007G058300 Sobic007G058300 Sobic006G277550--Sobic007G058300 Sobic008G044500 Sobic008G044500 Sobic006G277550--Sobic008G044500 Sobic006G277550--Sobic005G213200 Sobic006G038800 Sobic006G038800 Sobic006G277550--Sobic006G038800 Sobic006G277550--Sobic001G331301 Sobic001G243600 Sobic001G243600 Sobic006G277550--Sobic001G243600 Sobic001G403000 Sobic001G403000 Sobic006G277550--Sobic001G403000 Sobic002G375400 Sobic002G375400 Sobic006G277550--Sobic002G375400 Sobic004G273400 Sobic004G273400 Sobic001G243500--Sobic004G273400 Sobic001G243500--Sobic001G243600 Sobic001G100700 Sobic001G100700 Sobic001G243500--Sobic001G100700 Sobic001G243500--Sobic005G213200 Sobic002G346100 Sobic002G346100 Sobic001G243500--Sobic002G346100 Sobic001G243500--Sobic009G106800 Sobic001G243400 Sobic001G243400 Sobic001G243500--Sobic001G243400 Sobic002G200300 Sobic002G200300 Sobic001G243500--Sobic002G200300 Sobic001G243500--Sobic001G331301 Sobic009G158700--Sobic001G243500 Sobic009G158700--Sobic009G106800 Sobic009G158700--Sobic008G044500 Sobic009G158700--Sobic005G213200 Sobic009G158700--Sobic001G243600 Sobic009G158700--Sobic001G100700 Sobic009G158700--Sobic004G273400 Sobic009G158700--Sobic006G277550 Sobic009G158700--Sobic001G335600 Sobic002G018500--Sobic007G135201 Sobic002G018500--Sobic004G128400 Sobic001G453100 Sobic001G453100 Sobic002G018500--Sobic001G453100 Sobic002G018500--Sobic006G038800 Sobic002G018500--Sobic002G182500 Sobic002G018500--Sobic007G067600 Sobic003G426100 Sobic003G426100 Sobic002G018500--Sobic003G426100 Sobic002G018500--Sobic004G111800 Sobic007G066932 Sobic007G066932 Sobic002G018500--Sobic007G066932 Sobic005G156600--Sobic002G182400 Sobic010G035700 Sobic010G035700 Sobic005G156600--Sobic010G035700 Sobic002G163100 Sobic002G163100 Sobic005G156600--Sobic002G163100 Sobic005G169100 Sobic005G169100 Sobic005G156600--Sobic005G169100 Sobic005G156600--Sobic002G018500 Sobic005G156600--Sobic001G335600 Sobic010G102300 Sobic010G102300 Sobic005G156600--Sobic010G102300 Sobic004G180301 Sobic004G180301 Sobic005G156600--Sobic004G180301 Sobic005G156600--Sobic004G128400 Sobic001G248500--Sobic001G331301 Sobic001G248500--Sobic006G038800 Sobic006G002100 Sobic006G002100 Sobic001G248500--Sobic006G002100 Sobic001G248500--Sobic004G128400 Sobic001G248500--Sobic003G227300 Sobic010G204100 Sobic010G204100 Sobic001G248500--Sobic010G204100 Sobic001G248500--Sobic005G213200 Sobic001G248500--Sobic001G320400 Sobic001G248500--Sobic001G335600 Sobic002G182400--Sobic005G156600 Sobic002G182400--Sobic002G182500 Sobic002G182400--Sobic004G128400 Sobic002G182400--Sobic005G169100 Sobic001G342700 Sobic001G342700 Sobic002G182400--Sobic001G342700 Sobic007G060300 Sobic007G060300 Sobic002G182400--Sobic007G060300 Sobic002G182400--Sobic010G035700 Sobic001G343500 Sobic001G343500 Sobic002G182400--Sobic001G343500 Sobic002G182400--Sobic002G018500
Octagon: transcription factors


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