Gene annotation
Transcriptome id Sobic.001G320400.1
Synonym Sb01g031120
Functional annotation lysM domain containing protein, putative, expressed
UniProt C5WUL0
Pfam PF01476
Panther DB PTHR33648:SF3 PTHR33648
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G25433 : peptidoglycan-binding LysM domain-containing protein
RAP-DB (Rice) LOC_Os10g38040.1 : lysM domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a000251 , Zm00025a003092
Brachypodium KQJ97531
Barley HORVU1Hr1G048910.1 , HORVU1Hr1G048920.1 , HORVU1Hr1G048920.2 , HORVU4Hr1G085870.1 , HORVU1Hr1G048930.1
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G128400 O-methyltransferase, putative, expressed -
2 Sobic.001G231600 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase
3 Sobic.003G227300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WRKY11, expressed -
4 Sobic.007G135201 - -
5 Sobic.002G182500 nucleic acid binding protein, putative, expressed -
6 Sobic.004G037000 tRNA synthetases class II domain containing protein, expressed K01876: aspartyl-tRNA synthetase
7 Sobic.001G331301 - -
8 Sobic.010G084700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
9 Sobic.001G319600 Relative abundance under control condition and upregulated in cold susceptible sorghum under cold stress(PubMedID : 26645959)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
10 Sobic.007G067600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Cupin domain containing protein, expressed -
11 Sobic.001G495164 - -
12 Sobic.002G104900 B12D protein, putative, expressed -
13 Sobic.001G339700 expressed protein -
14 Sobic.010G178500 Expressed in drought and heat(PubMedID : 29862293)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@endothelial differentiation-related factor 1, putative, expressed K03627: putative transcription factor
15 Sobic.007G145600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@4-Coumarate-CoA ligase(PubMedID : 22313236)@AMP-binding domain containing protein, expressed K01904: 4-coumarate--CoA ligase
16 Sobic.004G216600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsGrx_C2.1 - glutaredoxin subgroup I, expressed K03676: grxC, GLRX, glutaredoxin 3
17 Sobic.002G183100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.001G190200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@transporter family protein, putative, expressed -
19 Sobic.005G206601 - -
20 Sobic.008G070350 - K01945: phosphoribosylamine---glycine ligase


Gene co-expression network
sample Sobic001G320400 Sobic001G320400 Sobic004G128400 Sobic004G128400 Sobic001G320400--Sobic004G128400 Sobic001G231600 Sobic001G231600 Sobic001G320400--Sobic001G231600 Sobic003G227300 Sobic003G227300 Sobic001G320400--Sobic003G227300 Sobic007G135201 Sobic007G135201 Sobic001G320400--Sobic007G135201 Sobic002G182500 Sobic002G182500 Sobic001G320400--Sobic002G182500 Sobic004G037000 Sobic004G037000 Sobic001G320400--Sobic004G037000 Sobic001G331301 Sobic001G331301 Sobic001G320400--Sobic001G331301 Sobic010G084700 Sobic010G084700 Sobic001G320400--Sobic010G084700 Sobic001G319600 Sobic001G319600 Sobic001G320400--Sobic001G319600 Sobic004G128400--Sobic001G231600 Sobic004G128400--Sobic002G182500 Sobic004G128400--Sobic001G320400 Sobic004G128400--Sobic001G331301 Sobic004G128400--Sobic007G135201 Sobic001G495164 Sobic001G495164 Sobic004G128400--Sobic001G495164 Sobic010G117900 Sobic010G117900 Sobic004G128400--Sobic010G117900 Sobic007G067600 Sobic007G067600 Sobic004G128400--Sobic007G067600 Sobic004G128400--Sobic010G084700 Sobic001G231600--Sobic007G135201 Sobic001G231600--Sobic007G067600 Sobic001G231600--Sobic001G495164 Sobic006G084600 Sobic006G084600 Sobic001G231600--Sobic006G084600 Sobic007G067350 Sobic007G067350 Sobic001G231600--Sobic007G067350 Sobic010G102300 Sobic010G102300 Sobic001G231600--Sobic010G102300 Sobic002G195400 Sobic002G195400 Sobic001G231600--Sobic002G195400 Sobic001G231600--Sobic004G128400 Sobic004G221500 Sobic004G221500 Sobic001G231600--Sobic004G221500 Sobic001G119100 Sobic001G119100 Sobic003G227300--Sobic001G119100 Sobic002G183200 Sobic002G183200 Sobic003G227300--Sobic002G183200 Sobic001G025300 Sobic001G025300 Sobic003G227300--Sobic001G025300 Sobic007G145600 Sobic007G145600 Sobic003G227300--Sobic007G145600 Sobic001G339700 Sobic001G339700 Sobic003G227300--Sobic001G339700 Sobic004G071650 Sobic004G071650 Sobic003G227300--Sobic004G071650 Sobic003G227300--Sobic001G331301 Sobic009G120000 Sobic009G120000 Sobic003G227300--Sobic009G120000 Sobic005G045900 Sobic005G045900 Sobic003G227300--Sobic005G045900 Sobic003G426100 Sobic003G426100 Sobic007G135201--Sobic003G426100 Sobic007G135201--Sobic001G231600 Sobic007G066932 Sobic007G066932 Sobic007G135201--Sobic007G066932 Sobic007G135201--Sobic007G067600 Sobic007G135201--Sobic002G195400 Sobic007G135201--Sobic007G067350 Sobic007G135201--Sobic010G102300 Sobic010G035700 Sobic010G035700 Sobic007G135201--Sobic010G035700 Sobic007G135201--Sobic006G084600 Sobic002G182500--Sobic004G128400 Sobic001G342700 Sobic001G342700 Sobic002G182500--Sobic001G342700 Sobic001G343601 Sobic001G343601 Sobic002G182500--Sobic001G343601 Sobic002G182400 Sobic002G182400 Sobic002G182500--Sobic002G182400 Sobic009G009400 Sobic009G009400 Sobic002G182500--Sobic009G009400 Sobic005G169100 Sobic005G169100 Sobic002G182500--Sobic005G169100 Sobic006G036500 Sobic006G036500 Sobic002G182500--Sobic006G036500 Sobic002G183100 Sobic002G183100 Sobic002G182500--Sobic002G183100 Sobic001G260000 Sobic001G260000 Sobic002G182500--Sobic001G260000 Sobic007G155200 Sobic007G155200 Sobic004G037000--Sobic007G155200 Sobic002G361100 Sobic002G361100 Sobic004G037000--Sobic002G361100 Sobic010G084600 Sobic010G084600 Sobic004G037000--Sobic010G084600 Sobic002G184200 Sobic002G184200 Sobic004G037000--Sobic002G184200 Sobic004G037000--Sobic010G084700 Sobic009G224100 Sobic009G224100 Sobic004G037000--Sobic009G224100 Sobic004G037000--Sobic004G221500 Sobic006G207000 Sobic006G207000 Sobic004G037000--Sobic006G207000 Sobic010G196600 Sobic010G196600 Sobic004G037000--Sobic010G196600 Sobic001G331301--Sobic004G128400 Sobic001G331301--Sobic003G227300 Sobic001G335600 Sobic001G335600 Sobic001G331301--Sobic001G335600 Sobic004G111800 Sobic004G111800 Sobic001G331301--Sobic004G111800 Sobic005G213200 Sobic005G213200 Sobic001G331301--Sobic005G213200 Sobic001G243500 Sobic001G243500 Sobic001G331301--Sobic001G243500 Sobic009G106800 Sobic009G106800 Sobic001G331301--Sobic009G106800 Sobic005G206601 Sobic005G206601 Sobic001G331301--Sobic005G206601 Sobic006G277550 Sobic006G277550 Sobic001G331301--Sobic006G277550 Sobic010G084700--Sobic004G221500 Sobic010G084100 Sobic010G084100 Sobic010G084700--Sobic010G084100 Sobic010G084700--Sobic010G117900 Sobic010G084700--Sobic002G184200 Sobic010G176600 Sobic010G176600 Sobic010G084700--Sobic010G176600 Sobic003G286600 Sobic003G286600 Sobic010G084700--Sobic003G286600 Sobic001G348700 Sobic001G348700 Sobic010G084700--Sobic001G348700 Sobic001G423800 Sobic001G423800 Sobic010G084700--Sobic001G423800 Sobic001G192200 Sobic001G192200 Sobic010G084700--Sobic001G192200 Sobic004G216600 Sobic004G216600 Sobic001G319600--Sobic004G216600 Sobic001G319600--Sobic002G361100 Sobic001G319600--Sobic007G067600 Sobic001G319600--Sobic010G084700 Sobic006G275200 Sobic006G275200 Sobic001G319600--Sobic006G275200 Sobic009G061200 Sobic009G061200 Sobic001G319600--Sobic009G061200 Sobic002G261000 Sobic002G261000 Sobic001G319600--Sobic002G261000 Sobic006G173900 Sobic006G173900 Sobic001G319600--Sobic006G173900 Sobic001G319600--Sobic001G231600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.