Gene annotation
Transcriptome id Sobic.001G190200.1
Synonym ATSTP1, STP1, Sb01g016730
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
transporter family protein, putative, expressed
UniProt C5WV98
Pfam PF07690
Panther DB PTHR23500 PTHR23500:SF60
NCBI CDD KOG0254; Predicted transporter (major facilitator superfamily)
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT1G11260 : sugar transporter 1
RAP-DB (Rice) LOC_Os03g39710.1 : transporter family protein, putative, expressed
MaizeGDB (Corn) Zm00025a056183 , Zm00025a030010 , Zm00025a034851 , Zm00025a045362 , Zm00025a046980 , Zm00025a048377 , Zm00025a006257 , Zm00025a044857 , Zm00025a050081
Brachypodium KQK04292 , KQK17831 , KQJ90241 , KQJ87983 , KQK21214 , KQJ89755 , KQK15772 , PNT63360
Barley HORVU7Hr1G019280.4 , HORVU7Hr1G019280.1 , HORVU7Hr1G019280.3 , HORVU3Hr1G102860.6 , HORVU3Hr1G102860.7 , HORVU3Hr1G102860.5 , HORVU3Hr1G102860.2 , HORVU3Hr1G102860.3 , HORVU3Hr1G102860.1 , HORVU2Hr1G064160.1 , HORVU2Hr1G064160.2 , HORVU2Hr1G064160.5 , HORVU2Hr1G064160.4 , HORVU2Hr1G064160.6 , HORVU2Hr1G064160.9 , HORVU5Hr1G065630.1 , HORVU5Hr1G065630.3 , HORVU5Hr1G065630.2 , HORVU5Hr1G065630.5 , HORVU5Hr1G065630.4 , HORVU5Hr1G000380.1 , HORVU2Hr1G079790.1 , HORVU2Hr1G079790.2 , HORVU2Hr1G079790.3 , HORVU2Hr1G079790.4 , HORVU2Hr1G079790.5 , HORVU2Hr1G079790.6 , HORVU2Hr1G079790.7 , HORVU2Hr1G079790.8 , HORVU2Hr1G079790.9 , HORVU7Hr1G019240.1 , HORVU2Hr1G064160.11 , HORVU2Hr1G064160.10 , HORVU2Hr1G064160.12 , HORVU7Hr1G069030.1 , HORVU7Hr1G069030.2 , HORVU7Hr1G069030.5 , HORVU7Hr1G069030.6 , HORVU2Hr1G041080.9 , HORVU2Hr1G041080.8 , HORVU2Hr1G041080.3 , HORVU2Hr1G041080.2 , HORVU2Hr1G041080.1 , HORVU2Hr1G041080.7 , HORVU2Hr1G041080.6 , HORVU2Hr1G041080.5 , HORVU2Hr1G041080.4
Wheat TraesCS3D02G470300 , TraesCS5B02G001000 , TraesCS3A02G475400 , TraesCS3B02G518800 , TraesCS5B02G225100 , TraesCS2D02G319100 , TraesCS3A02G475200 , TraesCS2B02G339100 , TraesCS7B02G185800 , TraesCS2A02G341400 , TraesCS2A02G205500 , TraesCS7D02G286600 , TraesCS2B02G232900 , TraesCS5D02G001600 , TraesCS7A02G288800 , TraesCS2D02G264200 , TraesCS5A02G226500 , TraesCS5D02G233900 , TraesCS2A02G259500 , TraesCS2B02G282400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G099900 expressed protein -
2 Sobic.006G173900 glutathione peroxidase, putative, expressed K00432: gpx, btuE, glutathione peroxidase
3 Sobic.002G393000 pyrrolidone-carboxylate peptidase, putative, expressed K01304: pyroglutamyl-peptidase
4 Sobic.005G051200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor ERF110, putative, expressed -
5 Sobic.010G084700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
6 Sobic.010G176600 - -
7 Sobic.001G319600 Relative abundance under control condition and upregulated in cold susceptible sorghum under cold stress(PubMedID : 26645959)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
8 Sobic.006G275200 CHCH domain containing protein, expressed -
9 Sobic.001G025300 hydrolase, alpha/beta fold family domain containing protein, expressed -
10 Sobic.001G231600 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase
11 Sobic.009G070400 expressed protein -
12 Sobic.001G317200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
13 Sobic.003G286600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sphingolipid C4-hydroxylase SUR2, putative, expressed K04713: sphinganine C4-monooxygenase
14 Sobic.004G216600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsGrx_C2.1 - glutaredoxin subgroup I, expressed K03676: grxC, GLRX, glutaredoxin 3
15 Sobic.008G136400 expressed protein -
16 Sobic.009G198000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@O-methyltransferase, putative, expressed -
17 Sobic.004G221500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein K13113: UBL5, ubiquitin-like protein 5
18 Sobic.001G423800 DNA binding protein, putative, expressed -
19 Sobic.009G035200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@thioesterase family protein, putative, expressed -
20 Sobic.009G032800 peroxidase precursor, putative, expressed K00430: peroxidase


Gene co-expression network
sample Sobic001G190200 Sobic001G190200 Sobic010G099900 Sobic010G099900 Sobic001G190200--Sobic010G099900 Sobic006G173900 Sobic006G173900 Sobic001G190200--Sobic006G173900 Sobic002G393000 Sobic002G393000 Sobic001G190200--Sobic002G393000 Sobic005G051200 Sobic005G051200 Sobic001G190200--Sobic005G051200 Sobic010G084700 Sobic010G084700 Sobic001G190200--Sobic010G084700 Sobic010G176600 Sobic010G176600 Sobic001G190200--Sobic010G176600 Sobic001G319600 Sobic001G319600 Sobic001G190200--Sobic001G319600 Sobic006G275200 Sobic006G275200 Sobic001G190200--Sobic006G275200 Sobic001G025300 Sobic001G025300 Sobic001G190200--Sobic001G025300 Sobic010G099900--Sobic006G173900 Sobic010G099900--Sobic002G393000 Sobic010G099900--Sobic006G275200 Sobic009G008900 Sobic009G008900 Sobic010G099900--Sobic009G008900 Sobic001G119400 Sobic001G119400 Sobic010G099900--Sobic001G119400 Sobic006G127900 Sobic006G127900 Sobic010G099900--Sobic006G127900 Sobic008G136400 Sobic008G136400 Sobic010G099900--Sobic008G136400 Sobic002G414600 Sobic002G414600 Sobic010G099900--Sobic002G414600 Sobic004G216600 Sobic004G216600 Sobic010G099900--Sobic004G216600 Sobic006G173900--Sobic009G008900 Sobic006G173900--Sobic010G099900 Sobic006G173900--Sobic002G393000 Sobic006G173900--Sobic006G275200 Sobic006G173900--Sobic008G136400 Sobic006G173900--Sobic002G414600 Sobic006G173900--Sobic001G119400 Sobic001G423800 Sobic001G423800 Sobic006G173900--Sobic001G423800 Sobic004G177700 Sobic004G177700 Sobic006G173900--Sobic004G177700 Sobic002G393000--Sobic001G119400 Sobic002G393000--Sobic006G275200 Sobic002G393000--Sobic006G173900 Sobic002G393000--Sobic001G423800 Sobic002G393000--Sobic009G008900 Sobic002G393000--Sobic008G136400 Sobic002G393000--Sobic010G099900 Sobic002G393000--Sobic002G414600 Sobic009G183400 Sobic009G183400 Sobic002G393000--Sobic009G183400 Sobic001G317200 Sobic001G317200 Sobic005G051200--Sobic001G317200 Sobic009G035200 Sobic009G035200 Sobic005G051200--Sobic009G035200 Sobic008G050600 Sobic008G050600 Sobic005G051200--Sobic008G050600 Sobic002G416600 Sobic002G416600 Sobic005G051200--Sobic002G416600 Sobic009G164600 Sobic009G164600 Sobic005G051200--Sobic009G164600 Sobic003G345100 Sobic003G345100 Sobic005G051200--Sobic003G345100 Sobic003G286600 Sobic003G286600 Sobic005G051200--Sobic003G286600 Sobic005G063100 Sobic005G063100 Sobic005G051200--Sobic005G063100 Sobic001G252300 Sobic001G252300 Sobic005G051200--Sobic001G252300 Sobic004G221500 Sobic004G221500 Sobic010G084700--Sobic004G221500 Sobic010G084100 Sobic010G084100 Sobic010G084700--Sobic010G084100 Sobic010G117900 Sobic010G117900 Sobic010G084700--Sobic010G117900 Sobic002G184200 Sobic002G184200 Sobic010G084700--Sobic002G184200 Sobic010G084700--Sobic010G176600 Sobic010G084700--Sobic003G286600 Sobic001G348700 Sobic001G348700 Sobic010G084700--Sobic001G348700 Sobic010G084700--Sobic001G423800 Sobic001G192200 Sobic001G192200 Sobic010G084700--Sobic001G192200 Sobic010G176600--Sobic003G286600 Sobic010G176600--Sobic005G063100 Sobic002G140400 Sobic002G140400 Sobic010G176600--Sobic002G140400 Sobic010G176600--Sobic008G050600 Sobic010G176600--Sobic001G423800 Sobic009G234100 Sobic009G234100 Sobic010G176600--Sobic009G234100 Sobic010G176600--Sobic010G084700 Sobic003G116800 Sobic003G116800 Sobic010G176600--Sobic003G116800 Sobic004G189400 Sobic004G189400 Sobic010G176600--Sobic004G189400 Sobic001G319600--Sobic004G216600 Sobic002G361100 Sobic002G361100 Sobic001G319600--Sobic002G361100 Sobic007G067600 Sobic007G067600 Sobic001G319600--Sobic007G067600 Sobic001G319600--Sobic010G084700 Sobic001G319600--Sobic006G275200 Sobic009G061200 Sobic009G061200 Sobic001G319600--Sobic009G061200 Sobic002G261000 Sobic002G261000 Sobic001G319600--Sobic002G261000 Sobic001G319600--Sobic006G173900 Sobic001G231600 Sobic001G231600 Sobic001G319600--Sobic001G231600 Sobic006G275200--Sobic008G136400 Sobic006G275200--Sobic002G393000 Sobic006G275200--Sobic009G008900 Sobic006G275200--Sobic006G173900 Sobic001G097600 Sobic001G097600 Sobic006G275200--Sobic001G097600 Sobic006G275200--Sobic001G119400 Sobic003G367200 Sobic003G367200 Sobic006G275200--Sobic003G367200 Sobic001G317000 Sobic001G317000 Sobic006G275200--Sobic001G317000 Sobic001G038900 Sobic001G038900 Sobic006G275200--Sobic001G038900 Sobic001G025101 Sobic001G025101 Sobic001G025300--Sobic001G025101 Sobic001G025300--Sobic002G416600 Sobic002G183200 Sobic002G183200 Sobic001G025300--Sobic002G183200 Sobic001G025300--Sobic003G286600 Sobic001G025300--Sobic005G051200 Sobic001G025300--Sobic001G317200 Sobic004G166700 Sobic004G166700 Sobic001G025300--Sobic004G166700 Sobic006G099900 Sobic006G099900 Sobic001G025300--Sobic006G099900 Sobic001G070800 Sobic001G070800 Sobic001G025300--Sobic001G070800
Octagon: transcription factors


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