Gene annotation
Transcriptome id Sobic.001G009900.1
Synonym Sb01g000970, PTS, PANC, ATPTS
Functional annotation pantoate--beta-alanine ligase, putative, expressed
UniProt A0A1B6QGU9
Pfam PF02569
Panther DB PTHR21299 PTHR21299:SF1
NCBI CDD KOG3042; Panthothenate synthetase
KEGG Orthology K01918; pantoate--beta-alanine ligase
Gene Ontology GO:0015940; pantothenate biosynthetic process GO:0004592pantoate-beta-alanine ligase activity


Orthologs (automatic annotation)
TAIR AT5G48840 : homolog of bacterial PANC
RAP-DB (Rice) LOC_Os03g63490.1 : pantoate--beta-alanine ligase, putative, expressed
MaizeGDB (Corn) Zm00025a009063
Brachypodium KQK12075
Barley HORVU5Hr1G122760.10 , HORVU5Hr1G122760.9
Wheat TraesCS5B02G542300 , TraesCS4A02G328200 , TraesCS5D02G545500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G100700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@PIII5 - Proteinase inhibitor II family protein precursor, expressed -
2 Sobic.005G213200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein kinase family protein, putative, expressed -
3 Sobic.001G444400 peroxidase precursor, putative, expressed K00430: peroxidase
4 Sobic.006G039700 expressed protein -
5 Sobic.003G227300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WRKY11, expressed -
6 Sobic.009G106800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
7 Sobic.008G150800 Cf-4A protein, putative, expressed -
8 Sobic.009G120000 - -
9 Sobic.006G199100 pathogenesis-related Bet v I family protein, putative, expressed -
10 Sobic.010G071900 Cinnamyl alcohol dehydrogenase(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@a cinnamyl alcohol dehydrogenase (CAD)(PubmedID : 26440083)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
11 Sobic.001G331301 - -
12 Sobic.003G152100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxidase precursor, putative, expressed -
13 Sobic.001G243500 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
14 Sobic.001G119100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -
15 Sobic.004G111800 VQ domain containing protein, putative, expressed -
16 Sobic.001G400700 pathogenesis-related Bet v I family protein, putative, expressed -
17 Sobic.010G209900 phospholipase D. Active site motif family protein, expressed K16860: phospholipase D3/4
18 Sobic.005G084600 ARGOS, putative, expressed -
19 Sobic.001G248500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Glutathione reductases(PubMedID : 23783412)@glutathione reductase, putative, expressed K00383: GSR, glutathione reductase (NADPH)
20 Sobic.005G101800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dirigent, putative, expressed -


Gene co-expression network
sample Sobic001G009900 Sobic001G009900 Sobic001G100700 Sobic001G100700 Sobic001G009900--Sobic001G100700 Sobic005G213200 Sobic005G213200 Sobic001G009900--Sobic005G213200 Sobic001G444400 Sobic001G444400 Sobic001G009900--Sobic001G444400 Sobic006G039700 Sobic006G039700 Sobic001G009900--Sobic006G039700 Sobic003G227300 Sobic003G227300 Sobic001G009900--Sobic003G227300 Sobic009G106800 Sobic009G106800 Sobic001G009900--Sobic009G106800 Sobic008G150800 Sobic008G150800 Sobic001G009900--Sobic008G150800 Sobic009G120000 Sobic009G120000 Sobic001G009900--Sobic009G120000 Sobic006G199100 Sobic006G199100 Sobic001G009900--Sobic006G199100 Sobic001G100700--Sobic005G213200 Sobic001G243500 Sobic001G243500 Sobic001G100700--Sobic001G243500 Sobic001G100700--Sobic001G444400 Sobic001G243600 Sobic001G243600 Sobic001G100700--Sobic001G243600 Sobic001G100700--Sobic009G106800 Sobic001G100700--Sobic009G120000 Sobic004G273400 Sobic004G273400 Sobic001G100700--Sobic004G273400 Sobic010G209900 Sobic010G209900 Sobic001G100700--Sobic010G209900 Sobic003G129000 Sobic003G129000 Sobic001G100700--Sobic003G129000 Sobic005G213200--Sobic001G100700 Sobic005G213200--Sobic001G243600 Sobic005G213200--Sobic001G243500 Sobic005G213200--Sobic009G120000 Sobic005G213200--Sobic009G106800 Sobic005G213200--Sobic001G444400 Sobic005G213200--Sobic004G273400 Sobic010G071900 Sobic010G071900 Sobic005G213200--Sobic010G071900 Sobic005G213200--Sobic010G209900 Sobic006G153100 Sobic006G153100 Sobic001G444400--Sobic006G153100 Sobic010G084400 Sobic010G084400 Sobic001G444400--Sobic010G084400 Sobic001G444400--Sobic009G106800 Sobic009G196400 Sobic009G196400 Sobic001G444400--Sobic009G196400 Sobic007G141500 Sobic007G141500 Sobic001G444400--Sobic007G141500 Sobic003G252800 Sobic003G252800 Sobic001G444400--Sobic003G252800 Sobic004G111800 Sobic004G111800 Sobic001G444400--Sobic004G111800 Sobic001G444400--Sobic001G100700 Sobic003G426300 Sobic003G426300 Sobic001G444400--Sobic003G426300 Sobic001G400700 Sobic001G400700 Sobic006G039700--Sobic001G400700 Sobic004G245800 Sobic004G245800 Sobic006G039700--Sobic004G245800 Sobic001G400800 Sobic001G400800 Sobic006G039700--Sobic001G400800 Sobic006G039700--Sobic001G444400 Sobic006G039700--Sobic001G100700 Sobic002G183200 Sobic002G183200 Sobic006G039700--Sobic002G183200 Sobic001G401300 Sobic001G401300 Sobic006G039700--Sobic001G401300 Sobic005G101800 Sobic005G101800 Sobic006G039700--Sobic005G101800 Sobic006G039700--Sobic009G106800 Sobic001G119100 Sobic001G119100 Sobic003G227300--Sobic001G119100 Sobic003G227300--Sobic002G183200 Sobic001G025300 Sobic001G025300 Sobic003G227300--Sobic001G025300 Sobic007G145600 Sobic007G145600 Sobic003G227300--Sobic007G145600 Sobic001G339700 Sobic001G339700 Sobic003G227300--Sobic001G339700 Sobic004G071650 Sobic004G071650 Sobic003G227300--Sobic004G071650 Sobic001G331301 Sobic001G331301 Sobic003G227300--Sobic001G331301 Sobic003G227300--Sobic009G120000 Sobic005G045900 Sobic005G045900 Sobic003G227300--Sobic005G045900 Sobic009G106800--Sobic001G444400 Sobic009G106800--Sobic010G084400 Sobic009G106800--Sobic009G196400 Sobic009G106800--Sobic001G100700 Sobic009G106800--Sobic004G111800 Sobic009G106800--Sobic005G213200 Sobic009G106800--Sobic001G243600 Sobic009G106800--Sobic003G252800 Sobic009G106800--Sobic006G153100 Sobic008G150800--Sobic001G009900 Sobic002G004700 Sobic002G004700 Sobic008G150800--Sobic002G004700 Sobic002G163100 Sobic002G163100 Sobic008G150800--Sobic002G163100 Sobic008G150800--Sobic005G213200 Sobic008G150800--Sobic001G100700 Sobic008G150800--Sobic010G071900 Sobic008G150800--Sobic003G227300 Sobic008G150800--Sobic006G039700 Sobic008G150800--Sobic009G106800 Sobic004G166700 Sobic004G166700 Sobic009G120000--Sobic004G166700 Sobic009G120000--Sobic007G141500 Sobic005G051200 Sobic005G051200 Sobic009G120000--Sobic005G051200 Sobic001G317200 Sobic001G317200 Sobic009G120000--Sobic001G317200 Sobic005G084600 Sobic005G084600 Sobic009G120000--Sobic005G084600 Sobic003G117600 Sobic003G117600 Sobic009G120000--Sobic003G117600 Sobic006G092500 Sobic006G092500 Sobic009G120000--Sobic006G092500 Sobic009G120000--Sobic001G243600 Sobic009G120000--Sobic005G213200 Sobic006G199100--Sobic001G400700 Sobic006G199100--Sobic003G129000 Sobic006G199100--Sobic007G141500 Sobic009G043600 Sobic009G043600 Sobic006G199100--Sobic009G043600 Sobic005G092900 Sobic005G092900 Sobic006G199100--Sobic005G092900 Sobic006G199100--Sobic009G120000 Sobic006G199100--Sobic001G444400 Sobic006G199100--Sobic003G426300 Sobic006G199100--Sobic005G101800
Octagon: transcription factors


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