Gene annotation
Transcriptome id Sobic.007G006700.1
Synonym Sb07g000740
Functional annotation polygalacturonase, putative, expressed
UniProt A0A1B6PF73
Pfam PF12708
Panther DB PTHR31339 PTHR31339:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G33440 : Pectin lyase-like superfamily protein
RAP-DB (Rice) LOC_Os08g01600.1 : polygalacturonase, putative, expressed
MaizeGDB (Corn) Zm00025a040156
Brachypodium PNT66503 , KQJ94795 , KQJ94794
Barley HORVU7Hr1G077560.3 , HORVU7Hr1G077560.8 , HORVU7Hr1G077560.9 , HORVU7Hr1G077560.1 , HORVU7Hr1G077560.2 , HORVU7Hr1G077560.4 , HORVU7Hr1G077560.5 , HORVU7Hr1G077560.6 , HORVU7Hr1G077560.7 , HORVU7Hr1G077550.1 , HORVU7Hr1G077560.12 , HORVU7Hr1G077560.13 , HORVU7Hr1G077560.10 , HORVU7Hr1G077560.11 , HORVU7Hr1G077560.14 , HORVU7Hr1G077560.15
Wheat TraesCS7B02G224700 , TraesCS7D02G320900 , TraesCS7A02G323800 , TraesCS7A02G323800 , TraesCS7A02G323800
Populus -


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cDNA sequences
Sobic.007G006700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G085900 mitochondrial carrier protein, putative, expressed K15121: solute carrier family 25, member 44
2 Sobic.002G083266 - K00326: cytochrome-b5 reductase
3 Sobic.003G023000 CID11, putative, expressed -
4 Sobic.010G016400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxisomal biogenesis factor 11, putative, expressed -
5 Sobic.009G111600 expressed protein -
6 Sobic.001G058100 thioredoxin, putative, expressed -
7 Sobic.006G096400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
8 Sobic.010G188100 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
9 Sobic.001G224400 eukaryotic translation initiation factor, putative, expressed K03259: translation initiation factor 4E
10 Sobic.002G134400 inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed K01240: uridine nucleosidase
11 Sobic.001G403700 mitochondrial carrier protein, putative, expressed K15113: SLC25A28_37, solute carrier family 25 (mitochondrial iron transporter), member 28/37
12 Sobic.010G094600 zinc finger, C3HC4 type, domain containing protein, expressed -
13 Sobic.002G261900 arabinogalactan protein, putative, expressed -
14 Sobic.001G122500 SNARE associated Golgi protein, putative, expressed -
15 Sobic.003G367451 - K08516: synaptobrevin homolog YKT6
16 Sobic.004G039300 phosphatidate cytidylyltransferase family protein, putative, expressed K00902: dolichol kinase
17 Sobic.010G026700 cornichon protein, putative, expressed -
18 Sobic.003G167500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@heavy metal-associated domain containing protein, expressed -
19 Sobic.002G294200 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
20 Sobic.002G159300 ferrochelatase-2, chloroplast precursor, putative, expressed K01772: hemH, protoporphyrin/coproporphyrin ferrochelatase


Gene co-expression network
sample Sobic007G006700 Sobic007G006700 Sobic001G085900 Sobic001G085900 Sobic007G006700--Sobic001G085900 Sobic002G083266 Sobic002G083266 Sobic007G006700--Sobic002G083266 Sobic003G023000 Sobic003G023000 Sobic007G006700--Sobic003G023000 Sobic010G016400 Sobic010G016400 Sobic007G006700--Sobic010G016400 Sobic009G111600 Sobic009G111600 Sobic007G006700--Sobic009G111600 Sobic001G058100 Sobic001G058100 Sobic007G006700--Sobic001G058100 Sobic006G096400 Sobic006G096400 Sobic007G006700--Sobic006G096400 Sobic010G188100 Sobic010G188100 Sobic007G006700--Sobic010G188100 Sobic001G224400 Sobic001G224400 Sobic007G006700--Sobic001G224400 Sobic004G039300 Sobic004G039300 Sobic001G085900--Sobic004G039300 Sobic001G313500 Sobic001G313500 Sobic001G085900--Sobic001G313500 Sobic001G158500 Sobic001G158500 Sobic001G085900--Sobic001G158500 Sobic001G085900--Sobic002G083266 Sobic002G385900 Sobic002G385900 Sobic001G085900--Sobic002G385900 Sobic010G129600 Sobic010G129600 Sobic001G085900--Sobic010G129600 Sobic001G298300 Sobic001G298300 Sobic001G085900--Sobic001G298300 Sobic001G085900--Sobic007G006700 Sobic003G061900 Sobic003G061900 Sobic001G085900--Sobic003G061900 Sobic003G367451 Sobic003G367451 Sobic002G083266--Sobic003G367451 Sobic006G264300 Sobic006G264300 Sobic002G083266--Sobic006G264300 Sobic001G415000 Sobic001G415000 Sobic002G083266--Sobic001G415000 Sobic002G083266--Sobic009G111600 Sobic002G083266--Sobic001G224400 Sobic006G062800 Sobic006G062800 Sobic002G083266--Sobic006G062800 Sobic002G261900 Sobic002G261900 Sobic002G083266--Sobic002G261900 Sobic010G213400 Sobic010G213400 Sobic002G083266--Sobic010G213400 Sobic004G272800 Sobic004G272800 Sobic002G083266--Sobic004G272800 Sobic003G023000--Sobic003G367451 Sobic003G104700 Sobic003G104700 Sobic003G023000--Sobic003G104700 Sobic003G023000--Sobic002G083266 Sobic006G182100 Sobic006G182100 Sobic003G023000--Sobic006G182100 Sobic003G023000--Sobic001G224400 Sobic002G214900 Sobic002G214900 Sobic003G023000--Sobic002G214900 Sobic001G403700 Sobic001G403700 Sobic003G023000--Sobic001G403700 Sobic010G026700 Sobic010G026700 Sobic003G023000--Sobic010G026700 Sobic009G001400 Sobic009G001400 Sobic003G023000--Sobic009G001400 Sobic005G139400 Sobic005G139400 Sobic010G016400--Sobic005G139400 Sobic009G167700 Sobic009G167700 Sobic010G016400--Sobic009G167700 Sobic004G347300 Sobic004G347300 Sobic010G016400--Sobic004G347300 Sobic006G119200 Sobic006G119200 Sobic010G016400--Sobic006G119200 Sobic007G148800 Sobic007G148800 Sobic010G016400--Sobic007G148800 Sobic006G217700 Sobic006G217700 Sobic010G016400--Sobic006G217700 Sobic001G010400 Sobic001G010400 Sobic010G016400--Sobic001G010400 Sobic004G102400 Sobic004G102400 Sobic010G016400--Sobic004G102400 Sobic009G172500 Sobic009G172500 Sobic010G016400--Sobic009G172500 Sobic004G284500 Sobic004G284500 Sobic009G111600--Sobic004G284500 Sobic009G111600--Sobic001G403700 Sobic004G276100 Sobic004G276100 Sobic009G111600--Sobic004G276100 Sobic008G179500 Sobic008G179500 Sobic009G111600--Sobic008G179500 Sobic009G111600--Sobic002G083266 Sobic009G111600--Sobic003G367451 Sobic009G111600--Sobic010G213400 Sobic009G111600--Sobic004G272800 Sobic001G399100 Sobic001G399100 Sobic009G111600--Sobic001G399100 Sobic001G236300 Sobic001G236300 Sobic001G058100--Sobic001G236300 Sobic004G335000 Sobic004G335000 Sobic001G058100--Sobic004G335000 Sobic002G257400 Sobic002G257400 Sobic001G058100--Sobic002G257400 Sobic006G252200 Sobic006G252200 Sobic001G058100--Sobic006G252200 Sobic010G044200 Sobic010G044200 Sobic001G058100--Sobic010G044200 Sobic001G289400 Sobic001G289400 Sobic001G058100--Sobic001G289400 Sobic001G058100--Sobic003G104700 Sobic006G220900 Sobic006G220900 Sobic001G058100--Sobic006G220900 Sobic001G058100--Sobic002G083266 Sobic006G096400--Sobic009G172500 Sobic006G096400--Sobic010G016400 Sobic006G096400--Sobic008G179500 Sobic001G026900 Sobic001G026900 Sobic006G096400--Sobic001G026900 Sobic006G096400--Sobic001G010400 Sobic002G381300 Sobic002G381300 Sobic006G096400--Sobic002G381300 Sobic002G024100 Sobic002G024100 Sobic006G096400--Sobic002G024100 Sobic006G096400--Sobic009G111600 Sobic003G229200 Sobic003G229200 Sobic006G096400--Sobic003G229200 Sobic001G220400 Sobic001G220400 Sobic010G188100--Sobic001G220400 Sobic009G219900 Sobic009G219900 Sobic010G188100--Sobic009G219900 Sobic010G101500 Sobic010G101500 Sobic010G188100--Sobic010G101500 Sobic010G188100--Sobic003G367451 Sobic003G077900 Sobic003G077900 Sobic010G188100--Sobic003G077900 Sobic010G188100--Sobic009G001400 Sobic002G400000 Sobic002G400000 Sobic010G188100--Sobic002G400000 Sobic002G166900 Sobic002G166900 Sobic010G188100--Sobic002G166900 Sobic001G283500 Sobic001G283500 Sobic010G188100--Sobic001G283500 Sobic003G368500 Sobic003G368500 Sobic001G224400--Sobic003G368500 Sobic003G155400 Sobic003G155400 Sobic001G224400--Sobic003G155400 Sobic002G153500 Sobic002G153500 Sobic001G224400--Sobic002G153500 Sobic010G154700 Sobic010G154700 Sobic001G224400--Sobic010G154700 Sobic001G224400--Sobic010G213400 Sobic008G189300 Sobic008G189300 Sobic001G224400--Sobic008G189300 Sobic010G153100 Sobic010G153100 Sobic001G224400--Sobic010G153100 Sobic001G132100 Sobic001G132100 Sobic001G224400--Sobic001G132100 Sobic002G222900 Sobic002G222900 Sobic001G224400--Sobic002G222900
Octagon: transcription factors


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