Gene annotation
Transcriptome id Sobic.006G119600.1
Synonym Sb06g020045,
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
Up-reguralion under drought (PubMedID : 24916767)
GRAM and C2 domains containing protein, putative, expressed
UniProt C5YAF6
Pfam PF02893 PF00168 PF16016
Panther DB PTHR10774 PTHR10774:SF94
NCBI CDD KOG1032; Uncharacterized conserved protein, contains GRAM domain
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G50170 : C2 calcium/lipid-binding and GRAM domain containing protein
RAP-DB (Rice) LOC_Os04g40070.1 : GRAM and C2 domains containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a011001
Brachypodium PNT61300 , KQJ83149 , PNT61299
Barley HORVU2Hr1G082480.24 , HORVU2Hr1G082480.21 , HORVU2Hr1G082480.20 , HORVU2Hr1G082480.23 , HORVU2Hr1G082480.22 , HORVU2Hr1G082480.9 , HORVU2Hr1G082480.10 , HORVU2Hr1G082480.11 , HORVU2Hr1G082480.2 , HORVU2Hr1G082480.3 , HORVU2Hr1G082480.1 , HORVU2Hr1G082480.6 , HORVU2Hr1G082480.7 , HORVU2Hr1G082480.4 , HORVU2Hr1G082480.5 , HORVU2Hr1G082480.8 , HORVU2Hr1G082480.12 , HORVU2Hr1G082480.13 , HORVU2Hr1G082480.14 , HORVU2Hr1G082480.15 , HORVU2Hr1G082480.16 , HORVU2Hr1G082480.17 , HORVU2Hr1G082480.18
Wheat TraesCS2B02G354700 , TraesCS2A02G327300 , TraesCS2A02G327300 , TraesCS2A02G327300 , TraesCS2D02G335600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G224200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein kinase family protein, putative, expressed -
2 Sobic.003G281600 lachrymatory factor synthase, putative, expressed -
3 Sobic.001G027800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@OsMan05 - Endo-Beta-Mannanase, expressed K19355: mannan endo-1,4-beta-mannosidase
4 Sobic.003G374600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsFBX31 - F-box domain containing protein, expressed -
5 Sobic.005G061000 ABC-2 type transporter domain containing protein, expressed -
6 Sobic.005G061033 - -
7 Sobic.006G272700 Up-reguralion under drought(PubMedID : 24916767)@expressed protein -
8 Sobic.009G118600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@eukaryotic peptide chain release factor subunit 1-1, putative, expressed K03265: ETF1, peptide chain release factor subunit 1
9 Sobic.005G215766 - -
10 Sobic.003G289900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ENTH domain containing protein, expressed K12471: epsin
11 Sobic.003G197300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@AR791, putative, expressed -
12 Sobic.009G236300 lectin-like receptor kinase, putative, expressed -
13 Sobic.010G114300 expressed protein -
14 Sobic.003G230700 Up-reguralion under drought(PubMedID : 24916767)@CBS domain containing membrane protein, putative, expressed -
15 Sobic.008G144500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ZOS12-09 - C2H2 zinc finger protein, expressed -
16 Sobic.009G238600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed K14497: protein phosphatase 2C
17 Sobic.010G146500 RGH1A, putative, expressed -
18 Sobic.001G210200 RIPER9 - Ripening-related family protein precursor, putative, expressed -
19 Sobic.001G210200 RIPER9 - Ripening-related family protein precursor, putative, expressed -
20 Sobic.001G210200 RIPER9 - Ripening-related family protein precursor, putative, expressed -


Gene co-expression network
sample Sobic006G119600 Sobic006G119600 Sobic003G224200 Sobic003G224200 Sobic006G119600--Sobic003G224200 Sobic003G281600 Sobic003G281600 Sobic006G119600--Sobic003G281600 Sobic001G027800 Sobic001G027800 Sobic006G119600--Sobic001G027800 Sobic003G374600 Sobic003G374600 Sobic006G119600--Sobic003G374600 Sobic005G061000 Sobic005G061000 Sobic006G119600--Sobic005G061000 Sobic005G061033 Sobic005G061033 Sobic006G119600--Sobic005G061033 Sobic006G272700 Sobic006G272700 Sobic006G119600--Sobic006G272700 Sobic009G118600 Sobic009G118600 Sobic006G119600--Sobic009G118600 Sobic005G215766 Sobic005G215766 Sobic006G119600--Sobic005G215766 Sobic003G224200--Sobic006G119600 Sobic003G224200--Sobic003G281600 Sobic009G238600 Sobic009G238600 Sobic003G224200--Sobic009G238600 Sobic003G224200--Sobic005G061033 Sobic003G224200--Sobic005G061000 Sobic003G197300 Sobic003G197300 Sobic003G224200--Sobic003G197300 Sobic010G146500 Sobic010G146500 Sobic003G224200--Sobic010G146500 Sobic003G224200--Sobic001G027800 Sobic010G114300 Sobic010G114300 Sobic003G224200--Sobic010G114300 Sobic005G110421 Sobic005G110421 Sobic003G281600--Sobic005G110421 Sobic003G281600--Sobic006G119600 Sobic003G281600--Sobic010G114300 Sobic003G281600--Sobic005G061000 Sobic006G081200 Sobic006G081200 Sobic003G281600--Sobic006G081200 Sobic003G281600--Sobic003G197300 Sobic003G281600--Sobic003G224200 Sobic001G418600 Sobic001G418600 Sobic003G281600--Sobic001G418600 Sobic010G253500 Sobic010G253500 Sobic003G281600--Sobic010G253500 Sobic001G027800--Sobic006G272700 Sobic001G210200 Sobic001G210200 Sobic001G027800--Sobic001G210200 Sobic003G374600--Sobic005G215766 Sobic003G374600--Sobic006G119600 Sobic008G144500 Sobic008G144500 Sobic003G374600--Sobic008G144500 Sobic001G235500 Sobic001G235500 Sobic003G374600--Sobic001G235500 Sobic003G374600--Sobic009G118600 Sobic003G374600--Sobic003G197300 Sobic001G092000 Sobic001G092000 Sobic003G374600--Sobic001G092000 Sobic009G236300 Sobic009G236300 Sobic003G374600--Sobic009G236300 Sobic009G142200 Sobic009G142200 Sobic003G374600--Sobic009G142200 Sobic005G061000--Sobic005G061033 Sobic002G037400 Sobic002G037400 Sobic005G061000--Sobic002G037400 Sobic007G143100 Sobic007G143100 Sobic005G061000--Sobic007G143100 Sobic001G155300 Sobic001G155300 Sobic005G061000--Sobic001G155300 Sobic005G016900 Sobic005G016900 Sobic005G061000--Sobic005G016900 Sobic003G397400 Sobic003G397400 Sobic005G061000--Sobic003G397400 Sobic007G169600 Sobic007G169600 Sobic005G061000--Sobic007G169600 Sobic007G143200 Sobic007G143200 Sobic005G061000--Sobic007G143200 Sobic002G325600 Sobic002G325600 Sobic005G061000--Sobic002G325600 Sobic005G061033--Sobic005G061000 Sobic001G237000 Sobic001G237000 Sobic005G061033--Sobic001G237000 Sobic005G061033--Sobic003G197300 Sobic005G061033--Sobic006G119600 Sobic004G256800 Sobic004G256800 Sobic005G061033--Sobic004G256800 Sobic001G206300 Sobic001G206300 Sobic005G061033--Sobic001G206300 Sobic001G502700 Sobic001G502700 Sobic005G061033--Sobic001G502700 Sobic002G225300 Sobic002G225300 Sobic005G061033--Sobic002G225300 Sobic005G061033--Sobic003G224200 Sobic006G272700--Sobic001G027800 Sobic006G272700--Sobic010G253500 Sobic001G210250 Sobic001G210250 Sobic006G272700--Sobic001G210250 Sobic006G272700--Sobic001G210200 Sobic009G118600--Sobic001G235500 Sobic006G115300 Sobic006G115300 Sobic009G118600--Sobic006G115300 Sobic003G269800 Sobic003G269800 Sobic009G118600--Sobic003G269800 Sobic009G136100 Sobic009G136100 Sobic009G118600--Sobic009G136100 Sobic006G086100 Sobic006G086100 Sobic009G118600--Sobic006G086100 Sobic004G236550 Sobic004G236550 Sobic009G118600--Sobic004G236550 Sobic009G118600--Sobic005G215766 Sobic009G097300 Sobic009G097300 Sobic009G118600--Sobic009G097300 Sobic003G332000 Sobic003G332000 Sobic009G118600--Sobic003G332000 Sobic005G215766--Sobic003G397400 Sobic005G215766--Sobic009G097300 Sobic005G215766--Sobic006G272700 Sobic005G215766--Sobic001G027800 Sobic005G215766--Sobic010G253500 Sobic003G137900 Sobic003G137900 Sobic005G215766--Sobic003G137900 Sobic005G215766--Sobic001G235500 Sobic005G215766--Sobic001G210250 Sobic005G215766--Sobic001G210200
Octagon: transcription factors


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