Gene annotation
Transcriptome id Sobic.009G238600.1
Synonym AHG3, ATPP2CA, Sb09g029080, PP2CA
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
protein phosphatase 2C, putative, expressed
UniProt A0A1Z5R3V2
Pfam PF13672
Panther DB PTHR13832 PTHR13832:SF318
NCBI CDD KOG0698; Serine/threonine protein phosphatase
KEGG Orthology K14497; protein phosphatase 2C
Gene Ontology GO:0006470; protein dephosphorylation GO:0004722protein serine/threonine phosphatase activity


Orthologs (automatic annotation)
TAIR AT2G29380 : highly ABA-induced PP2C gene 3
RAP-DB (Rice) LOC_Os01g46760.1 : protein phosphatase 2C, putative, expressed
MaizeGDB (Corn) Zm00025a012428 , Zm00025a028197 , Zm00025a036659 , Zm00025a038704 , Zm00025a001791 , Zm00025a055673
Brachypodium KQK04770 , KQK04583 , KQK09009
Barley HORVU7Hr1G008470.2 , HORVU7Hr1G008470.3 , HORVU7Hr1G008520.2 , HORVU1Hr1G090360.6 , HORVU1Hr1G090360.9 , HORVU1Hr1G090360.8 , HORVU1Hr1G090360.3 , HORVU1Hr1G090360.2 , HORVU1Hr1G090360.7 , HORVU1Hr1G090360.5 , HORVU1Hr1G090360.4 , HORVU7Hr1G008560.2 , HORVU7Hr1G008550.1 , HORVU7Hr1G008560.1 , HORVU3Hr1G059170.5 , HORVU3Hr1G059170.2 , HORVU2Hr1G000090.4 , HORVU2Hr1G000090.2 , HORVU2Hr1G000090.1 , HORVU2Hr1G000090.6 , HORVU2Hr1G000090.3
Wheat TraesCS4A02G443500 , TraesCS3B02G266200 , TraesCS3B02G266200 , TraesCS2D02G000300 , TraesCS1A02G411200 , TraesCS3A02G237800 , TraesCS1D02G419000 , TraesCS3D02G238000 , TraesCS2A02G000400 , TraesCS1B02G441400 , TraesCS4A02G443400
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G171800 - -
2 Sobic.003G224200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein kinase family protein, putative, expressed -
3 Sobic.004G032600 - -
4 Sobic.006G067050 - -
5 Sobic.006G017600 DNA-directed RNA polymerase II subunit RPB9, putative, expressed K03017: RPB9, DNA-directed RNA polymerase II subunit RPB9
6 Sobic.006G223800 ZOS8-01 - C2H2 zinc finger protein, expressed -
7 Sobic.003G035001 - -
8 Sobic.006G119600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@GRAM and C2 domains containing protein, putative, expressed -
9 Sobic.002G037600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.008G013200 expressed protein -
11 Sobic.008G010900 DNA repair protein Rad51, putative, expressed K10872: meiotic recombination protein DMC1
12 Sobic.003G270100 dehydrin family protein, expressed -
13 Sobic.002G160100 expressed protein K14001: SIL1, nucleotide exchange factor SIL1
14 Sobic.002G014032 - -
15 Sobic.006G003350 - -
16 Sobic.001G309200 fatty acid hydroxylase, putative, expressed K14423: plant 4,4-dimethylsterol C-4alpha-methyl-monooxygenase
17 Sobic.003G035601 - -
18 Sobic.009G234500 similar to Cold acclimation protein COR413-TM1(PubMedID : 29862293)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@cold acclimation protein WCOR413, putative, expressed -
19 Sobic.002G016000 OsFBL32 - F-box domain and LRR containing protein, expressed -
20 Sobic.001G378300 Sucrose synthase 4(PubMedID : 26186930)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Sucrose synthase genes(PubMedID : 24456189)@Sucrose synthase 2 SUS2 (Os)(PubMedID : 27208977)@sucrose synthase(PubMedID : 26616172)@Sugar synthesis(PubMedID : 27330561)@sucrose synthase, putative, expressed K00695: sucrose synthase


Gene co-expression network
sample Sobic009G238600 Sobic009G238600 Sobic002G171800 Sobic002G171800 Sobic009G238600--Sobic002G171800 Sobic003G224200 Sobic003G224200 Sobic009G238600--Sobic003G224200 Sobic004G032600 Sobic004G032600 Sobic009G238600--Sobic004G032600 Sobic006G067050 Sobic006G067050 Sobic009G238600--Sobic006G067050 Sobic006G017600 Sobic006G017600 Sobic009G238600--Sobic006G017600 Sobic006G223800 Sobic006G223800 Sobic009G238600--Sobic006G223800 Sobic003G035001 Sobic003G035001 Sobic009G238600--Sobic003G035001 Sobic006G119600 Sobic006G119600 Sobic009G238600--Sobic006G119600 Sobic002G037600 Sobic002G037600 Sobic009G238600--Sobic002G037600 Sobic002G171800--Sobic004G032600 Sobic002G171800--Sobic009G238600 Sobic004G278700 Sobic004G278700 Sobic002G171800--Sobic004G278700 Sobic003G302300 Sobic003G302300 Sobic002G171800--Sobic003G302300 Sobic002G171800--Sobic006G223800 Sobic006G219900 Sobic006G219900 Sobic002G171800--Sobic006G219900 Sobic008G010900 Sobic008G010900 Sobic002G171800--Sobic008G010900 Sobic001G427900 Sobic001G427900 Sobic002G171800--Sobic001G427900 Sobic004G098800 Sobic004G098800 Sobic002G171800--Sobic004G098800 Sobic003G224200--Sobic006G119600 Sobic003G281600 Sobic003G281600 Sobic003G224200--Sobic003G281600 Sobic003G224200--Sobic009G238600 Sobic005G061033 Sobic005G061033 Sobic003G224200--Sobic005G061033 Sobic005G061000 Sobic005G061000 Sobic003G224200--Sobic005G061000 Sobic003G197300 Sobic003G197300 Sobic003G224200--Sobic003G197300 Sobic010G146500 Sobic010G146500 Sobic003G224200--Sobic010G146500 Sobic001G027800 Sobic001G027800 Sobic003G224200--Sobic001G027800 Sobic010G114300 Sobic010G114300 Sobic003G224200--Sobic010G114300 Sobic001G490950 Sobic001G490950 Sobic004G032600--Sobic001G490950 Sobic004G032600--Sobic004G098800 Sobic001G226900 Sobic001G226900 Sobic004G032600--Sobic001G226900 Sobic003G392275 Sobic003G392275 Sobic004G032600--Sobic003G392275 Sobic002G102300 Sobic002G102300 Sobic004G032600--Sobic002G102300 Sobic010G006800 Sobic010G006800 Sobic004G032600--Sobic010G006800 Sobic004G032600--Sobic006G219900 Sobic002G368100 Sobic002G368100 Sobic004G032600--Sobic002G368100 Sobic003G141600 Sobic003G141600 Sobic004G032600--Sobic003G141600 Sobic010G049700 Sobic010G049700 Sobic006G067050--Sobic010G049700 Sobic006G067050--Sobic004G032600 Sobic010G143633 Sobic010G143633 Sobic006G067050--Sobic010G143633 Sobic005G048950 Sobic005G048950 Sobic006G067050--Sobic005G048950 Sobic004G116050 Sobic004G116050 Sobic006G067050--Sobic004G116050 Sobic005G144500 Sobic005G144500 Sobic006G067050--Sobic005G144500 Sobic003G001901 Sobic003G001901 Sobic006G067050--Sobic003G001901 Sobic008G105600 Sobic008G105600 Sobic006G067050--Sobic008G105600 Sobic005G173700 Sobic005G173700 Sobic006G067050--Sobic005G173700 Sobic006G017600--Sobic008G010900 Sobic006G017600--Sobic006G223800 Sobic005G202000 Sobic005G202000 Sobic006G017600--Sobic005G202000 Sobic004G101500 Sobic004G101500 Sobic006G017600--Sobic004G101500 Sobic010G090700 Sobic010G090700 Sobic006G017600--Sobic010G090700 Sobic004G040800 Sobic004G040800 Sobic006G017600--Sobic004G040800 Sobic001G152600 Sobic001G152600 Sobic006G017600--Sobic001G152600 Sobic008G098700 Sobic008G098700 Sobic006G017600--Sobic008G098700 Sobic006G181500 Sobic006G181500 Sobic006G017600--Sobic006G181500 Sobic006G223800--Sobic008G010900 Sobic006G223800--Sobic006G017600 Sobic002G014200 Sobic002G014200 Sobic006G223800--Sobic002G014200 Sobic005G110421 Sobic005G110421 Sobic006G223800--Sobic005G110421 Sobic002G019500 Sobic002G019500 Sobic006G223800--Sobic002G019500 Sobic002G019750 Sobic002G019750 Sobic006G223800--Sobic002G019750 Sobic008G155600 Sobic008G155600 Sobic006G223800--Sobic008G155600 Sobic010G093400 Sobic010G093400 Sobic006G223800--Sobic010G093400 Sobic001G112000 Sobic001G112000 Sobic006G223800--Sobic001G112000 Sobic003G167200 Sobic003G167200 Sobic003G035001--Sobic003G167200 Sobic002G266600 Sobic002G266600 Sobic003G035001--Sobic002G266600 Sobic002G099866 Sobic002G099866 Sobic003G035001--Sobic002G099866 Sobic001G509100 Sobic001G509100 Sobic003G035001--Sobic001G509100 Sobic001G264600 Sobic001G264600 Sobic003G035001--Sobic001G264600 Sobic001G261529 Sobic001G261529 Sobic003G035001--Sobic001G261529 Sobic001G452100 Sobic001G452100 Sobic003G035001--Sobic001G452100 Sobic008G007900 Sobic008G007900 Sobic003G035001--Sobic008G007900 Sobic009G234500 Sobic009G234500 Sobic003G035001--Sobic009G234500 Sobic006G119600--Sobic003G224200 Sobic006G119600--Sobic003G281600 Sobic006G119600--Sobic001G027800 Sobic003G374600 Sobic003G374600 Sobic006G119600--Sobic003G374600 Sobic006G119600--Sobic005G061000 Sobic006G119600--Sobic005G061033 Sobic006G272700 Sobic006G272700 Sobic006G119600--Sobic006G272700 Sobic009G118600 Sobic009G118600 Sobic006G119600--Sobic009G118600 Sobic005G215766 Sobic005G215766 Sobic006G119600--Sobic005G215766 Sobic001G196800 Sobic001G196800 Sobic002G037600--Sobic001G196800 Sobic003G294900 Sobic003G294900 Sobic002G037600--Sobic003G294900 Sobic001G203800 Sobic001G203800 Sobic002G037600--Sobic001G203800 Sobic006G208200 Sobic006G208200 Sobic002G037600--Sobic006G208200 Sobic004G328100 Sobic004G328100 Sobic002G037600--Sobic004G328100 Sobic006G272300 Sobic006G272300 Sobic002G037600--Sobic006G272300 Sobic001G309200 Sobic001G309200 Sobic002G037600--Sobic001G309200 Sobic005G185200 Sobic005G185200 Sobic002G037600--Sobic005G185200 Sobic003G270100 Sobic003G270100 Sobic002G037600--Sobic003G270100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.