Gene annotation
Transcriptome id Sobic.007G180300.2,Sobic.007G180300.1
Synonym HSFB2B, Sb07g025120, AT-HSFB2B
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
HSF-type DNA-binding domain containing protein, expressed
UniProt A0A1Z5RAH8 , A0A1Z5RAL7
Pfam PF00447
Panther DB PTHR10015 PTHR10015:SF194
NCBI CDD -
KEGG Orthology K09419; heat shock transcription factor, other eukaryote
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT5G62020 : heat shock transcription factor B2A
RAP-DB (Rice) LOC_Os08g43334.2 : HSF-type DNA-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a047239 , Zm00025a008110 , Zm00025a045167 , Zm00025a005373 , Zm00025a015267 , Zm00025a038009 , Zm00025a040051 , Zm00025a020093 , Zm00025a051078 , Zm00025a008557 , Zm00025a028347 , Zm00025a048930 , Zm00025a047752 , Zm00025a002613 , Zm00025a038597 , Zm00025a014026 , Zm00025a016308 , Zm00025a033648 , Zm00025a009095 , Zm00025a006888 , Zm00025a020360
Brachypodium KQK12029 , KQK05247 , KQK14978 , KQK14979 , KQK05248 , PNT68735 , KQK18031 , KQK12714 , KQK18032 , KQJ99265 , PNT77358 , PNT72861 , PNT72862 , KQJ91133 , KQK12030 , PNT70844 , KQJ99684 , KQK21569 , KQK23525 , KQK09735 , KQK23526
Barley HORVU5Hr1G123770.4 , HORVU5Hr1G123770.1 , HORVU5Hr1G123770.3 , HORVU5Hr1G123770.2 , HORVU2Hr1G026020.1 , HORVU5Hr1G094380.6 , HORVU3Hr1G071550.3 , HORVU3Hr1G071550.2 , HORVU1Hr1G081300.3 , HORVU1Hr1G081300.1 , HORVU3Hr1G071550.4 , HORVU5Hr1G080830.1 , HORVU7Hr1G088920.2 , HORVU7Hr1G088920.3 , HORVU7Hr1G088920.1 , HORVU5Hr1G094380.10 , HORVU5Hr1G094380.13 , HORVU5Hr1G094380.12 , HORVU5Hr1G094380.14 , HORVU5Hr1G080840.1 , HORVU7Hr1G056820.1 , HORVU7Hr1G056820.2 , HORVU7Hr1G056820.3 , HORVU7Hr1G056820.4 , HORVU5Hr1G094380.9 , HORVU5Hr1G094380.8 , HORVU5Hr1G094380.5 , HORVU5Hr1G094380.4 , HORVU5Hr1G094380.7 , HORVU5Hr1G094380.1 , HORVU5Hr1G094380.3 , HORVU5Hr1G105770.4 , HORVU5Hr1G105770.1 , HORVU5Hr1G105770.3 , HORVU5Hr1G105770.2
Wheat TraesCS7D02G270600 , TraesCS7D02G270600 , TraesCS5B02G315600 , TraesCS5B02G315600 , TraesCS3B02G323800 , TraesCS7B02G168300 , TraesCS2D02G211400 , TraesCS2D02G211400 , TraesCS4A02G322300 , TraesCS1A02G350400 , TraesCS1A02G350400 , TraesCS3A02G289200 , TraesCS3D02G289000 , TraesCS5B02G556200 , TraesCS7A02G355300 , TraesCS7D02G367700 , TraesCS2B02G171900 , TraesCS2B02G232000 , TraesCS2B02G232000 , TraesCS2A02G146600 , TraesCS5A02G314700 , TraesCS7A02G270100 , TraesCS7A02G270100 , TraesCS2A02G204500 , TraesCS2A02G204500 , TraesCS5D02G321000 , TraesCS5D02G553300 , TraesCS7B02G272500 , TraesCS7B02G168300 , TraesCS2D02G151200
Populus PNT39523


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G150400 Trihelix Family(PubMedID : 24864043)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@homeodomain, putative, expressed -
2 Sobic.010G030900 glycosyltransferase, putative, expressed -
3 Sobic.009G163900 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
4 Sobic.010G076700 expressed protein -
5 Sobic.002G203000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.34 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
6 Sobic.009G231400 Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@dnaJ domain containing protein, expressed K09510: DnaJ homolog subfamily B member 4
7 Sobic.006G161400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heat shock protein STI, putative, expressed K09553: stress-induced-phosphoprotein 1
8 Sobic.002G248100 expressed protein -
9 Sobic.006G095600 lipoxygenase (LOX) that catalyzes the first committed step of JA biosynthesis(PubMedID : 31597271)@lipoxygenase protein, putative, expressed K00454: lipoxygenase
10 Sobic.001G476400 - -
11 Sobic.001G077700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.001G051600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATPase, putative, expressed -
13 Sobic.003G129400 glycosyltransferase family 43 protein, putative, expressed K00735: galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1
14 Sobic.009G184400 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
15 Sobic.009G071800 6-phosphofructokinase, putative, expressed K00850: pfkA, 6-phosphofructokinase 1
16 Sobic.001G063600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CAMK_CAMK_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
17 Sobic.001G051800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsFBDUF18 - F-box and DUF domain containing protein, expressed -
18 Sobic.003G350700 DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
19 Sobic.001G489600 expressed protein -
20 Sobic.006G005600 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@heat shock protein, putative, expressed K04079: HSP90A, molecular chaperone HtpG


Gene co-expression network
sample Sobic007G180300 Sobic007G180300 Sobic003G150400 Sobic003G150400 Sobic007G180300--Sobic003G150400 Sobic010G030900 Sobic010G030900 Sobic007G180300--Sobic010G030900 Sobic009G163900 Sobic009G163900 Sobic007G180300--Sobic009G163900 Sobic010G076700 Sobic010G076700 Sobic007G180300--Sobic010G076700 Sobic002G203000 Sobic002G203000 Sobic007G180300--Sobic002G203000 Sobic009G231400 Sobic009G231400 Sobic007G180300--Sobic009G231400 Sobic006G161400 Sobic006G161400 Sobic007G180300--Sobic006G161400 Sobic002G248100 Sobic002G248100 Sobic007G180300--Sobic002G248100 Sobic006G095600 Sobic006G095600 Sobic007G180300--Sobic006G095600 Sobic003G150400--Sobic002G248100 Sobic001G398500 Sobic001G398500 Sobic003G150400--Sobic001G398500 Sobic001G077700 Sobic001G077700 Sobic003G150400--Sobic001G077700 Sobic009G071800 Sobic009G071800 Sobic003G150400--Sobic009G071800 Sobic010G076600 Sobic010G076600 Sobic003G150400--Sobic010G076600 Sobic003G150400--Sobic010G030900 Sobic003G150400--Sobic007G180300 Sobic009G184400 Sobic009G184400 Sobic003G150400--Sobic009G184400 Sobic001G209800 Sobic001G209800 Sobic003G150400--Sobic001G209800 Sobic004G257300 Sobic004G257300 Sobic010G030900--Sobic004G257300 Sobic010G030900--Sobic002G248100 Sobic001G476400 Sobic001G476400 Sobic010G030900--Sobic001G476400 Sobic010G030900--Sobic003G150400 Sobic010G030900--Sobic009G184400 Sobic003G296700 Sobic003G296700 Sobic010G030900--Sobic003G296700 Sobic001G051600 Sobic001G051600 Sobic010G030900--Sobic001G051600 Sobic001G173300 Sobic001G173300 Sobic010G030900--Sobic001G173300 Sobic010G030900--Sobic007G180300 Sobic009G163900--Sobic009G231400 Sobic001G092600 Sobic001G092600 Sobic009G163900--Sobic001G092600 Sobic006G184800 Sobic006G184800 Sobic009G163900--Sobic006G184800 Sobic006G005600 Sobic006G005600 Sobic009G163900--Sobic006G005600 Sobic006G055600 Sobic006G055600 Sobic009G163900--Sobic006G055600 Sobic004G321000 Sobic004G321000 Sobic009G163900--Sobic004G321000 Sobic009G163900--Sobic010G076700 Sobic004G245850 Sobic004G245850 Sobic009G163900--Sobic004G245850 Sobic004G278200 Sobic004G278200 Sobic009G163900--Sobic004G278200 Sobic010G076700--Sobic009G071800 Sobic010G076700--Sobic002G203000 Sobic010G076700--Sobic009G231400 Sobic010G076700--Sobic006G095600 Sobic010G076700--Sobic001G077700 Sobic010G076700--Sobic001G476400 Sobic010G076700--Sobic009G163900 Sobic004G283300 Sobic004G283300 Sobic010G076700--Sobic004G283300 Sobic004G025000 Sobic004G025000 Sobic010G076700--Sobic004G025000 Sobic002G203000--Sobic001G077700 Sobic002G203000--Sobic009G071800 Sobic002G203000--Sobic006G095600 Sobic001G489600 Sobic001G489600 Sobic002G203000--Sobic001G489600 Sobic002G203000--Sobic010G076700 Sobic009G258300 Sobic009G258300 Sobic002G203000--Sobic009G258300 Sobic001G473900 Sobic001G473900 Sobic002G203000--Sobic001G473900 Sobic007G057100 Sobic007G057100 Sobic002G203000--Sobic007G057100 Sobic002G203000--Sobic002G248100 Sobic009G231400--Sobic009G163900 Sobic001G093200 Sobic001G093200 Sobic009G231400--Sobic001G093200 Sobic001G420100 Sobic001G420100 Sobic009G231400--Sobic001G420100 Sobic009G231400--Sobic010G076700 Sobic009G231400--Sobic001G092600 Sobic003G350700 Sobic003G350700 Sobic009G231400--Sobic003G350700 Sobic009G231400--Sobic006G184800 Sobic005G122500 Sobic005G122500 Sobic009G231400--Sobic005G122500 Sobic009G231400--Sobic002G203000 Sobic003G067800 Sobic003G067800 Sobic006G161400--Sobic003G067800 Sobic009G255500 Sobic009G255500 Sobic006G161400--Sobic009G255500 Sobic006G161400--Sobic003G150400 Sobic006G161400--Sobic007G180300 Sobic006G161400--Sobic002G248100 Sobic001G052300 Sobic001G052300 Sobic006G161400--Sobic001G052300 Sobic001G101500 Sobic001G101500 Sobic006G161400--Sobic001G101500 Sobic006G161400--Sobic003G350700 Sobic010G105800 Sobic010G105800 Sobic006G161400--Sobic010G105800 Sobic002G248100--Sobic001G077700 Sobic008G177800 Sobic008G177800 Sobic002G248100--Sobic008G177800 Sobic010G234600 Sobic010G234600 Sobic002G248100--Sobic010G234600 Sobic002G294700 Sobic002G294700 Sobic002G248100--Sobic002G294700 Sobic002G248100--Sobic009G071800 Sobic004G286600 Sobic004G286600 Sobic002G248100--Sobic004G286600 Sobic002G248100--Sobic002G203000 Sobic002G248100--Sobic009G255500 Sobic006G231100 Sobic006G231100 Sobic002G248100--Sobic006G231100 Sobic006G095600--Sobic001G489600 Sobic006G095600--Sobic002G203000 Sobic006G095600--Sobic001G051600 Sobic006G095600--Sobic001G077700 Sobic006G095600--Sobic009G071800 Sobic006G095600--Sobic007G057100 Sobic004G084100 Sobic004G084100 Sobic006G095600--Sobic004G084100 Sobic006G095600--Sobic001G473900 Sobic006G095600--Sobic001G476400
Octagon: transcription factors


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