Gene annotation
Transcriptome id Sobic.006G161400.1
Synonym Sb06g023830
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
heat shock protein STI, putative, expressed
UniProt Q84YE4 , C5YCZ1
Pfam PF00515 PF13414
Panther DB PTHR22904 PTHR22904:SF371
NCBI CDD -
KEGG Orthology K09553; stress-induced-phosphoprotein 1
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G62740 : stress-inducible protein, putative
RAP-DB (Rice) LOC_Os02g43020.1 : heat shock protein STI, putative, expressed
MaizeGDB (Corn) Zm00025a032146 , Zm00025a010416 , Zm00025a020954
Brachypodium KQK00531 , KQJ83806
Barley HORVU5Hr1G011120.1 , HORVU2Hr1G092190.1 , HORVU2Hr1G092190.3 , HORVU2Hr1G092190.2
Wheat TraesCS2D02G383600 , TraesCS2B02G404400 , TraesCS2A02G386800 , TraesCS2A02G243800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G067800 universal stress protein domain containing protein, putative, expressed -
2 Sobic.009G255500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
3 Sobic.003G150400 Trihelix Family(PubMedID : 24864043)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@homeodomain, putative, expressed -
4 Sobic.007G180300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
5 Sobic.002G248100 expressed protein -
6 Sobic.001G052300 expressed protein -
7 Sobic.001G101500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@endoplasmic oxidoreductin-1 precursor, putative, expressed K10950: ERO1-like protein alpha
8 Sobic.003G350700 DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
9 Sobic.010G105800 calmodulin-binding heat-shock protein, putative, expressed -
10 Sobic.010G234600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
11 Sobic.004G228900 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@heat shock 22 kDa protein, mitochondrial precursor, putative, expressed K13993: HSP20 family protein
12 Sobic.009G071800 6-phosphofructokinase, putative, expressed K00850: pfkA, 6-phosphofructokinase 1
13 Sobic.009G231400 Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@dnaJ domain containing protein, expressed K09510: DnaJ homolog subfamily B member 4
14 Sobic.008G177800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
15 Sobic.001G197400 actin, putative, expressed K10355: actin, other eukaryote
16 Sobic.001G338600 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA and BR treatments"(PubMedID : 20499123)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@DUF260 domain containing protein, putative, expressed -
17 Sobic.001G398500 expressed high in San Chi San (an efficient nitrogen user)(PubMedID : 28697783)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@long cell-linked locus protein, putative, expressed -
18 Sobic.010G076700 expressed protein -
19 Sobic.002G294700 Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed -
20 Sobic.010G030900 glycosyltransferase, putative, expressed -


Gene co-expression network
sample Sobic006G161400 Sobic006G161400 Sobic003G067800 Sobic003G067800 Sobic006G161400--Sobic003G067800 Sobic009G255500 Sobic009G255500 Sobic006G161400--Sobic009G255500 Sobic003G150400 Sobic003G150400 Sobic006G161400--Sobic003G150400 Sobic007G180300 Sobic007G180300 Sobic006G161400--Sobic007G180300 Sobic002G248100 Sobic002G248100 Sobic006G161400--Sobic002G248100 Sobic001G052300 Sobic001G052300 Sobic006G161400--Sobic001G052300 Sobic001G101500 Sobic001G101500 Sobic006G161400--Sobic001G101500 Sobic003G350700 Sobic003G350700 Sobic006G161400--Sobic003G350700 Sobic010G105800 Sobic010G105800 Sobic006G161400--Sobic010G105800 Sobic001G338600 Sobic001G338600 Sobic003G067800--Sobic001G338600 Sobic003G067800--Sobic003G350700 Sobic003G067800--Sobic006G161400 Sobic004G228900 Sobic004G228900 Sobic003G067800--Sobic004G228900 Sobic001G426000 Sobic001G426000 Sobic003G067800--Sobic001G426000 Sobic003G067800--Sobic001G052300 Sobic003G067800--Sobic009G255500 Sobic010G104300 Sobic010G104300 Sobic003G067800--Sobic010G104300 Sobic003G067700 Sobic003G067700 Sobic003G067800--Sobic003G067700 Sobic008G177800 Sobic008G177800 Sobic009G255500--Sobic008G177800 Sobic009G255500--Sobic001G052300 Sobic006G165100 Sobic006G165100 Sobic009G255500--Sobic006G165100 Sobic009G183300 Sobic009G183300 Sobic009G255500--Sobic009G183300 Sobic002G294700 Sobic002G294700 Sobic009G255500--Sobic002G294700 Sobic009G255500--Sobic002G248100 Sobic009G255500--Sobic001G101500 Sobic003G324400 Sobic003G324400 Sobic009G255500--Sobic003G324400 Sobic010G234600 Sobic010G234600 Sobic009G255500--Sobic010G234600 Sobic003G150400--Sobic002G248100 Sobic001G398500 Sobic001G398500 Sobic003G150400--Sobic001G398500 Sobic001G077700 Sobic001G077700 Sobic003G150400--Sobic001G077700 Sobic009G071800 Sobic009G071800 Sobic003G150400--Sobic009G071800 Sobic010G076600 Sobic010G076600 Sobic003G150400--Sobic010G076600 Sobic010G030900 Sobic010G030900 Sobic003G150400--Sobic010G030900 Sobic003G150400--Sobic007G180300 Sobic009G184400 Sobic009G184400 Sobic003G150400--Sobic009G184400 Sobic001G209800 Sobic001G209800 Sobic003G150400--Sobic001G209800 Sobic007G180300--Sobic003G150400 Sobic007G180300--Sobic010G030900 Sobic009G163900 Sobic009G163900 Sobic007G180300--Sobic009G163900 Sobic010G076700 Sobic010G076700 Sobic007G180300--Sobic010G076700 Sobic002G203000 Sobic002G203000 Sobic007G180300--Sobic002G203000 Sobic009G231400 Sobic009G231400 Sobic007G180300--Sobic009G231400 Sobic007G180300--Sobic006G161400 Sobic007G180300--Sobic002G248100 Sobic006G095600 Sobic006G095600 Sobic007G180300--Sobic006G095600 Sobic002G248100--Sobic001G077700 Sobic002G248100--Sobic008G177800 Sobic002G248100--Sobic010G234600 Sobic002G248100--Sobic002G294700 Sobic002G248100--Sobic009G071800 Sobic004G286600 Sobic004G286600 Sobic002G248100--Sobic004G286600 Sobic002G248100--Sobic002G203000 Sobic002G248100--Sobic009G255500 Sobic006G231100 Sobic006G231100 Sobic002G248100--Sobic006G231100 Sobic001G052300--Sobic009G255500 Sobic001G052300--Sobic006G165100 Sobic001G052300--Sobic003G324400 Sobic005G037000 Sobic005G037000 Sobic001G052300--Sobic005G037000 Sobic001G052300--Sobic009G183300 Sobic002G036100 Sobic002G036100 Sobic001G052300--Sobic002G036100 Sobic001G077400 Sobic001G077400 Sobic001G052300--Sobic001G077400 Sobic009G217600 Sobic009G217600 Sobic001G052300--Sobic009G217600 Sobic001G441100 Sobic001G441100 Sobic001G052300--Sobic001G441100 Sobic010G217800 Sobic010G217800 Sobic001G101500--Sobic010G217800 Sobic010G220200 Sobic010G220200 Sobic001G101500--Sobic010G220200 Sobic001G101500--Sobic008G177800 Sobic002G415600 Sobic002G415600 Sobic001G101500--Sobic002G415600 Sobic001G101500--Sobic009G255500 Sobic001G101500--Sobic010G234600 Sobic004G036600 Sobic004G036600 Sobic001G101500--Sobic004G036600 Sobic010G234700 Sobic010G234700 Sobic001G101500--Sobic010G234700 Sobic001G101500--Sobic002G294700 Sobic003G350700--Sobic004G228900 Sobic003G350700--Sobic009G231400 Sobic003G350700--Sobic001G338600 Sobic005G122500 Sobic005G122500 Sobic003G350700--Sobic005G122500 Sobic003G350700--Sobic003G067800 Sobic003G350700--Sobic001G426000 Sobic002G278500 Sobic002G278500 Sobic003G350700--Sobic002G278500 Sobic003G350700--Sobic009G163900 Sobic003G350700--Sobic010G234700 Sobic010G105800--Sobic001G101500 Sobic001G197400 Sobic001G197400 Sobic010G105800--Sobic001G197400 Sobic009G208800 Sobic009G208800 Sobic010G105800--Sobic009G208800 Sobic007G101800 Sobic007G101800 Sobic010G105800--Sobic007G101800 Sobic010G105800--Sobic002G248100 Sobic008G074900 Sobic008G074900 Sobic010G105800--Sobic008G074900 Sobic010G105800--Sobic001G077700 Sobic010G105800--Sobic009G071800 Sobic010G105800--Sobic008G177800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.