Gene annotation
Transcriptome id Sobic.001G197400.1
Synonym Sb01g017430, ACT7
Functional annotation actin, putative, expressed
UniProt C5WW94
Pfam PF00022
Panther DB PTHR11937 PTHR11937:SF252
NCBI CDD -
KEGG Orthology K10355; actin, other eukaryote
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G09810 : actin 7
RAP-DB (Rice) LOC_Os10g36650.1 : actin, putative, expressed
MaizeGDB (Corn) Zm00025a017441 , Zm00025a006353 , Zm00025a016937 , Zm00025a008940 , Zm00025a006468 , Zm00025a039570 , Zm00025a055064 , Zm00025a012921 , Zm00025a034168 , Zm00025a038281 , Zm00025a038282
Brachypodium PNT73248 , KQJ97425 , KQJ85561 , KQK10759 , KQK08099
Barley HORVU3Hr1G083380.3 , HORVU3Hr1G083380.2 , HORVU3Hr1G083380.1 , HORVU3Hr1G083380.6 , HORVU3Hr1G083380.5 , HORVU3Hr1G083380.4 , HORVU4Hr1G008310.6 , HORVU4Hr1G008310.8 , HORVU5Hr1G039850.7 , HORVU1Hr1G047440.6 , HORVU1Hr1G047440.7 , HORVU1Hr1G047440.4 , HORVU1Hr1G047440.5 , HORVU1Hr1G047440.2 , HORVU1Hr1G047440.3 , HORVU1Hr1G047440.1 , HORVU5Hr1G039850.8 , HORVU4Hr1G008310.7 , HORVU4Hr1G008310.4 , HORVU4Hr1G008310.5 , HORVU4Hr1G008310.2 , HORVU4Hr1G008310.3 , HORVU4Hr1G008310.1 , HORVU5Hr1G039850.1 , HORVU5Hr1G039850.2 , HORVU5Hr1G039850.3 , HORVU5Hr1G039850.4 , HORVU5Hr1G039850.5 , HORVU5Hr1G039850.6 , HORVU4Hr1G008310.9 , HORVU5Hr1G000180.4 , HORVU5Hr1G000180.2 , HORVU5Hr1G000180.3 , HORVU5Hr1G000180.1 , HORVU5Hr1G117900.5 , HORVU5Hr1G117900.4 , HORVU5Hr1G117900.1 , HORVU5Hr1G117900.3 , HORVU5Hr1G117900.2 , HORVU1Hr1G002840.1 , HORVU1Hr1G002840.3 , HORVU1Hr1G002840.2 , HORVU1Hr1G002840.5 , HORVU1Hr1G002840.4 , HORVU1Hr1G002840.7 , HORVU1Hr1G002840.6
Wheat TraesCS5B02G124100 , TraesCS3B02G410000 , TraesCS3B02G410000 , TraesCS5A02G000400 , TraesCS1A02G179000 , TraesCS4B02G050600 , TraesCS1A02G179000 , TraesCS4B02G050600 , TraesCS4B02G050600 , TraesCS1A02G020500 , TraesCS1A02G020500 , TraesCS4A02G356100 , TraesCS4A02G356100 , TraesCS4D02G050800 , TraesCS5D02G516200 , TraesCS4D02G050800 , TraesCS4A02G264400 , TraesCS4A02G264400 , TraesCS4A02G264400 , TraesCS3A02G377300 , TraesCS1D02G177400 , TraesCS5A02G124300 , TraesCS5A02G124300 , TraesCS1D02G020000 , TraesCS5D02G132200 , TraesCS1B02G024500 , TraesCS1B02G201400 , TraesCS3D02G370400 , TraesCS3D02G370400 , TraesCS3D02G370400 , TraesCS5B02G516100
Populus PNT57598 , PNT17720 , PNS97854 , PNT57597 , PNS89844 , PNT57599 , PNS89800 , PNT57600 , PNT57601 , PNT57602 , PNT57603 , PNS97853 , PNT32494 , PNT32495 , PNT22925 , PNT22924 , PNT22921 , PNT22923 , PNT22922


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cDNA sequences
Sobic.001G197400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G105800 calmodulin-binding heat-shock protein, putative, expressed -
2 Sobic.009G255500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
3 Sobic.010G030900 glycosyltransferase, putative, expressed -
4 Sobic.001G101500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@endoplasmic oxidoreductin-1 precursor, putative, expressed K10950: ERO1-like protein alpha
5 Sobic.009G208800 hydrolase, acting on carbon-nitrogen, putative, expressed -
6 Sobic.009G220200 exostosin family domain containing protein, expressed -
7 Sobic.002G248100 expressed protein -
8 Sobic.001G052300 expressed protein -
9 Sobic.006G161400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heat shock protein STI, putative, expressed K09553: stress-induced-phosphoprotein 1
10 Sobic.001G513700 down-regulated TF in developmental senescence(PubMedID : 27586543)@BHLH transcription factor, putative, expressed -
11 Sobic.008G177800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
12 Sobic.003G150400 Trihelix Family(PubMedID : 24864043)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@homeodomain, putative, expressed -
13 Sobic.010G245800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00430: peroxidase
14 Sobic.004G257300 GPI-anchored protein, putative, expressed -
15 Sobic.001G051800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsFBDUF18 - F-box and DUF domain containing protein, expressed -
16 Sobic.009G071800 6-phosphofructokinase, putative, expressed K00850: pfkA, 6-phosphofructokinase 1
17 Sobic.010G234600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
18 Sobic.002G353400 transporter-related, putative, expressed K15285: solute carrier family 35, member E3
19 Sobic.001G077700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.002G294700 Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed -


Gene co-expression network
sample Sobic001G197400 Sobic001G197400 Sobic010G105800 Sobic010G105800 Sobic001G197400--Sobic010G105800 Sobic009G255500 Sobic009G255500 Sobic001G197400--Sobic009G255500 Sobic010G030900 Sobic010G030900 Sobic001G197400--Sobic010G030900 Sobic001G101500 Sobic001G101500 Sobic001G197400--Sobic001G101500 Sobic009G208800 Sobic009G208800 Sobic001G197400--Sobic009G208800 Sobic009G220200 Sobic009G220200 Sobic001G197400--Sobic009G220200 Sobic002G248100 Sobic002G248100 Sobic001G197400--Sobic002G248100 Sobic001G052300 Sobic001G052300 Sobic001G197400--Sobic001G052300 Sobic006G161400 Sobic006G161400 Sobic001G197400--Sobic006G161400 Sobic010G105800--Sobic001G101500 Sobic010G105800--Sobic001G197400 Sobic010G105800--Sobic009G208800 Sobic007G101800 Sobic007G101800 Sobic010G105800--Sobic007G101800 Sobic010G105800--Sobic002G248100 Sobic008G074900 Sobic008G074900 Sobic010G105800--Sobic008G074900 Sobic001G077700 Sobic001G077700 Sobic010G105800--Sobic001G077700 Sobic009G071800 Sobic009G071800 Sobic010G105800--Sobic009G071800 Sobic008G177800 Sobic008G177800 Sobic010G105800--Sobic008G177800 Sobic009G255500--Sobic008G177800 Sobic009G255500--Sobic001G052300 Sobic006G165100 Sobic006G165100 Sobic009G255500--Sobic006G165100 Sobic009G183300 Sobic009G183300 Sobic009G255500--Sobic009G183300 Sobic002G294700 Sobic002G294700 Sobic009G255500--Sobic002G294700 Sobic009G255500--Sobic002G248100 Sobic009G255500--Sobic001G101500 Sobic003G324400 Sobic003G324400 Sobic009G255500--Sobic003G324400 Sobic010G234600 Sobic010G234600 Sobic009G255500--Sobic010G234600 Sobic004G257300 Sobic004G257300 Sobic010G030900--Sobic004G257300 Sobic010G030900--Sobic002G248100 Sobic001G476400 Sobic001G476400 Sobic010G030900--Sobic001G476400 Sobic003G150400 Sobic003G150400 Sobic010G030900--Sobic003G150400 Sobic009G184400 Sobic009G184400 Sobic010G030900--Sobic009G184400 Sobic003G296700 Sobic003G296700 Sobic010G030900--Sobic003G296700 Sobic001G051600 Sobic001G051600 Sobic010G030900--Sobic001G051600 Sobic001G173300 Sobic001G173300 Sobic010G030900--Sobic001G173300 Sobic007G180300 Sobic007G180300 Sobic010G030900--Sobic007G180300 Sobic010G217800 Sobic010G217800 Sobic001G101500--Sobic010G217800 Sobic010G220200 Sobic010G220200 Sobic001G101500--Sobic010G220200 Sobic001G101500--Sobic008G177800 Sobic002G415600 Sobic002G415600 Sobic001G101500--Sobic002G415600 Sobic001G101500--Sobic009G255500 Sobic001G101500--Sobic010G234600 Sobic004G036600 Sobic004G036600 Sobic001G101500--Sobic004G036600 Sobic010G234700 Sobic010G234700 Sobic001G101500--Sobic010G234700 Sobic001G101500--Sobic002G294700 Sobic009G208800--Sobic001G173300 Sobic009G208800--Sobic004G257300 Sobic009G208800--Sobic009G220200 Sobic009G208800--Sobic003G296700 Sobic001G516600 Sobic001G516600 Sobic009G208800--Sobic001G516600 Sobic007G057100 Sobic007G057100 Sobic009G208800--Sobic007G057100 Sobic009G208800--Sobic002G294700 Sobic005G231700 Sobic005G231700 Sobic009G208800--Sobic005G231700 Sobic009G208800--Sobic008G177800 Sobic009G220200--Sobic009G208800 Sobic009G220200--Sobic003G296700 Sobic001G051800 Sobic001G051800 Sobic009G220200--Sobic001G051800 Sobic009G220200--Sobic001G516600 Sobic009G220200--Sobic001G173300 Sobic009G220200--Sobic004G257300 Sobic002G374100 Sobic002G374100 Sobic009G220200--Sobic002G374100 Sobic002G362900 Sobic002G362900 Sobic009G220200--Sobic002G362900 Sobic007G188100 Sobic007G188100 Sobic009G220200--Sobic007G188100 Sobic002G248100--Sobic001G077700 Sobic002G248100--Sobic008G177800 Sobic002G248100--Sobic010G234600 Sobic002G248100--Sobic002G294700 Sobic002G248100--Sobic009G071800 Sobic004G286600 Sobic004G286600 Sobic002G248100--Sobic004G286600 Sobic002G203000 Sobic002G203000 Sobic002G248100--Sobic002G203000 Sobic002G248100--Sobic009G255500 Sobic006G231100 Sobic006G231100 Sobic002G248100--Sobic006G231100 Sobic001G052300--Sobic009G255500 Sobic001G052300--Sobic006G165100 Sobic001G052300--Sobic003G324400 Sobic005G037000 Sobic005G037000 Sobic001G052300--Sobic005G037000 Sobic001G052300--Sobic009G183300 Sobic002G036100 Sobic002G036100 Sobic001G052300--Sobic002G036100 Sobic001G077400 Sobic001G077400 Sobic001G052300--Sobic001G077400 Sobic009G217600 Sobic009G217600 Sobic001G052300--Sobic009G217600 Sobic001G441100 Sobic001G441100 Sobic001G052300--Sobic001G441100 Sobic003G067800 Sobic003G067800 Sobic006G161400--Sobic003G067800 Sobic006G161400--Sobic009G255500 Sobic006G161400--Sobic003G150400 Sobic006G161400--Sobic007G180300 Sobic006G161400--Sobic002G248100 Sobic006G161400--Sobic001G052300 Sobic006G161400--Sobic001G101500 Sobic003G350700 Sobic003G350700 Sobic006G161400--Sobic003G350700 Sobic006G161400--Sobic010G105800
Octagon: transcription factors


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