Gene annotation
Transcriptome id Sobic.004G305200.4
Synonym Sb04g033840
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt A0A1Z5RQV4
Pfam PF13041
Panther DB PTHR24015 PTHR24015:SF420
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G73400 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os02g52220.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a022174 , Zm00025a030269
Brachypodium PNT69595 , PNT69597 , PNT69596
Barley HORVU6Hr1G077590.10 , HORVU6Hr1G077590.11 , HORVU6Hr1G077600.1 , HORVU6Hr1G077600.2 , HORVU6Hr1G077600.3 , HORVU7Hr1G085640.1 , HORVU2Hr1G124100.1 , HORVU6Hr1G077590.4 , HORVU6Hr1G077590.5 , HORVU6Hr1G077590.6 , HORVU6Hr1G077590.1 , HORVU6Hr1G077590.2 , HORVU6Hr1G077590.8 , HORVU6Hr1G077590.9
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.004G305200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G180700 SNF2 family N-terminal domain containing protein, expressed K14439: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1
2 Sobic.002G270800 amino acid transporter, putative, expressed -
3 Sobic.002G043500 aldehyde oxidase, putative, expressed K09842: abscisic-aldehyde oxidase
4 Sobic.002G429400 PPR repeat containing protein, expressed -
5 Sobic.004G289400 mitochondrial carrier protein, putative, expressed -
6 Sobic.001G034500 SEC14 cytosolic factor family protein, putative, expressed -
7 Sobic.002G011100 expressed protein -
8 Sobic.009G000400 expressed protein -
9 Sobic.001G413800 expressed protein K13141: integrator complex subunit 4
10 Sobic.001G186850 - -
11 Sobic.003G230600 transcription factor X1, putative, expressed -
12 Sobic.006G267600 elongation factor Tu, putative, expressed K14416: elongation factor 1 alpha-like protein
13 Sobic.001G088900 serine/threonine-protein kinase TOUSLED, putative, expressed K08864: tousled-like kinase
14 Sobic.004G007900 SNF2 family N-terminal domain containing protein, expressed K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
15 Sobic.002G235200 PPR repeat domain containing protein, putative, expressed -
16 Sobic.003G392550 - -
17 Sobic.005G000300 RNase P subunit p30, putative, expressed K03539: RPP1, ribonuclease P/MRP protein subunit RPP1
18 Sobic.010G032300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
19 Sobic.007G196900 expressed protein -
20 Sobic.002G340000 FAR1 family protein, expressed -


Gene co-expression network
sample Sobic004G305200 Sobic004G305200 Sobic006G180700 Sobic006G180700 Sobic004G305200--Sobic006G180700 Sobic002G270800 Sobic002G270800 Sobic004G305200--Sobic002G270800 Sobic002G043500 Sobic002G043500 Sobic004G305200--Sobic002G043500 Sobic002G429400 Sobic002G429400 Sobic004G305200--Sobic002G429400 Sobic004G289400 Sobic004G289400 Sobic004G305200--Sobic004G289400 Sobic001G034500 Sobic001G034500 Sobic004G305200--Sobic001G034500 Sobic002G011100 Sobic002G011100 Sobic004G305200--Sobic002G011100 Sobic009G000400 Sobic009G000400 Sobic004G305200--Sobic009G000400 Sobic001G413800 Sobic001G413800 Sobic004G305200--Sobic001G413800 Sobic009G074700 Sobic009G074700 Sobic006G180700--Sobic009G074700 Sobic001G085700 Sobic001G085700 Sobic006G180700--Sobic001G085700 Sobic006G138000 Sobic006G138000 Sobic006G180700--Sobic006G138000 Sobic009G040800 Sobic009G040800 Sobic006G180700--Sobic009G040800 Sobic006G180700--Sobic009G000400 Sobic001G335900 Sobic001G335900 Sobic006G180700--Sobic001G335900 Sobic009G045200 Sobic009G045200 Sobic006G180700--Sobic009G045200 Sobic006G091000 Sobic006G091000 Sobic006G180700--Sobic006G091000 Sobic005G040900 Sobic005G040900 Sobic006G180700--Sobic005G040900 Sobic003G223900 Sobic003G223900 Sobic002G270800--Sobic003G223900 Sobic002G270800--Sobic004G305200 Sobic009G120600 Sobic009G120600 Sobic002G270800--Sobic009G120600 Sobic010G066400 Sobic010G066400 Sobic002G270800--Sobic010G066400 Sobic004G262600 Sobic004G262600 Sobic002G270800--Sobic004G262600 Sobic010G248000 Sobic010G248000 Sobic002G270800--Sobic010G248000 Sobic003G327600 Sobic003G327600 Sobic002G270800--Sobic003G327600 Sobic004G049200 Sobic004G049200 Sobic002G270800--Sobic004G049200 Sobic003G252500 Sobic003G252500 Sobic002G270800--Sobic003G252500 Sobic002G110300 Sobic002G110300 Sobic002G043500--Sobic002G110300 Sobic001G083800 Sobic001G083800 Sobic002G043500--Sobic001G083800 Sobic001G179900 Sobic001G179900 Sobic002G043500--Sobic001G179900 Sobic010G033700 Sobic010G033700 Sobic002G043500--Sobic010G033700 Sobic002G189700 Sobic002G189700 Sobic002G043500--Sobic002G189700 Sobic001G333900 Sobic001G333900 Sobic002G043500--Sobic001G333900 Sobic002G009900 Sobic002G009900 Sobic002G043500--Sobic002G009900 Sobic007G196900 Sobic007G196900 Sobic002G043500--Sobic007G196900 Sobic002G043500--Sobic004G305200 Sobic002G429400--Sobic004G289400 Sobic002G429400--Sobic006G180700 Sobic003G006400 Sobic003G006400 Sobic002G429400--Sobic003G006400 Sobic002G429400--Sobic001G413800 Sobic003G014700 Sobic003G014700 Sobic002G429400--Sobic003G014700 Sobic008G098600 Sobic008G098600 Sobic002G429400--Sobic008G098600 Sobic005G028300 Sobic005G028300 Sobic002G429400--Sobic005G028300 Sobic001G334100 Sobic001G334100 Sobic002G429400--Sobic001G334100 Sobic001G122200 Sobic001G122200 Sobic002G429400--Sobic001G122200 Sobic004G289400--Sobic002G429400 Sobic003G039500 Sobic003G039500 Sobic004G289400--Sobic003G039500 Sobic004G289400--Sobic001G413800 Sobic001G460500 Sobic001G460500 Sobic004G289400--Sobic001G460500 Sobic003G259600 Sobic003G259600 Sobic004G289400--Sobic003G259600 Sobic004G357400 Sobic004G357400 Sobic004G289400--Sobic004G357400 Sobic009G134900 Sobic009G134900 Sobic004G289400--Sobic009G134900 Sobic008G040700 Sobic008G040700 Sobic004G289400--Sobic008G040700 Sobic004G180500 Sobic004G180500 Sobic004G289400--Sobic004G180500 Sobic001G477700 Sobic001G477700 Sobic001G034500--Sobic001G477700 Sobic003G284000 Sobic003G284000 Sobic001G034500--Sobic003G284000 Sobic006G154100 Sobic006G154100 Sobic001G034500--Sobic006G154100 Sobic001G004100 Sobic001G004100 Sobic001G034500--Sobic001G004100 Sobic001G135500 Sobic001G135500 Sobic001G034500--Sobic001G135500 Sobic001G034500--Sobic001G413800 Sobic003G212900 Sobic003G212900 Sobic001G034500--Sobic003G212900 Sobic001G097500 Sobic001G097500 Sobic001G034500--Sobic001G097500 Sobic007G042900 Sobic007G042900 Sobic001G034500--Sobic007G042900 Sobic009G194000 Sobic009G194000 Sobic002G011100--Sobic009G194000 Sobic005G026400 Sobic005G026400 Sobic002G011100--Sobic005G026400 Sobic002G115500 Sobic002G115500 Sobic002G011100--Sobic002G115500 Sobic002G235200 Sobic002G235200 Sobic002G011100--Sobic002G235200 Sobic004G224600 Sobic004G224600 Sobic002G011100--Sobic004G224600 Sobic004G007900 Sobic004G007900 Sobic002G011100--Sobic004G007900 Sobic004G277400 Sobic004G277400 Sobic002G011100--Sobic004G277400 Sobic001G034000 Sobic001G034000 Sobic002G011100--Sobic001G034000 Sobic002G398700 Sobic002G398700 Sobic002G011100--Sobic002G398700 Sobic009G000400--Sobic009G074700 Sobic006G028700 Sobic006G028700 Sobic009G000400--Sobic006G028700 Sobic009G000400--Sobic009G040800 Sobic009G000400--Sobic006G180700 Sobic009G000400--Sobic002G115500 Sobic007G026000 Sobic007G026000 Sobic009G000400--Sobic007G026000 Sobic009G000400--Sobic005G040900 Sobic010G279900 Sobic010G279900 Sobic009G000400--Sobic010G279900 Sobic009G000400--Sobic001G085700 Sobic001G413800--Sobic001G477700 Sobic001G413800--Sobic006G180700 Sobic001G413800--Sobic001G034500 Sobic001G413800--Sobic006G154100 Sobic006G281700 Sobic006G281700 Sobic001G413800--Sobic006G281700 Sobic001G413800--Sobic007G042900 Sobic010G204400 Sobic010G204400 Sobic001G413800--Sobic010G204400 Sobic004G068500 Sobic004G068500 Sobic001G413800--Sobic004G068500 Sobic002G363000 Sobic002G363000 Sobic001G413800--Sobic002G363000
Octagon: transcription factors


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