Gene annotation
Transcriptome id Sobic.001G034000.1,Sobic.001G034000.2
Synonym Sb01g003180
Functional annotation mTERF family protein, expressed
UniProt A0A1Z5S444 , C5WV08
Pfam PF02536
Panther DB PTHR13068 PTHR13068:SF17
NCBI CDD KOG1267; Mitochondrial transcription termination factor, mTERF
KEGG Orthology K15032; mTERF domain-containing protein, mitochondrial
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005739mitochondrion GO:0003690double-stranded DNA binding


Orthologs (automatic annotation)
TAIR AT5G07900 : Mitochondrial transcription termination factor family protein
RAP-DB (Rice) LOC_Os11g09990.1 : mTERF family protein, expressed
MaizeGDB (Corn) Zm00025a008814
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G327000 OsFBX157 - F-box domain containing protein, expressed -
2 Sobic.003G314300 WD domain, G-beta repeat domain containing protein, expressed -
3 Sobic.005G017200 cytidylyltransferase domain containing protein, expressed K00967: ethanolamine-phosphate cytidylyltransferase
4 Sobic.002G011100 expressed protein -
5 Sobic.003G409900 MYB family transcription factor, putative, expressed K12860: CDC5L, CDC5, pre-mRNA-splicing factor CDC5/CEF1
6 Sobic.002G290100 expressed protein K08739: DNA mismatch repair protein MLH3
7 Sobic.003G305900 expressed protein -
8 Sobic.003G177800 tetratricopeptide repeat containing protein, putative, expressed -
9 Sobic.007G204000 methyl-binding domain protein MBD, putative, expressed -
10 Sobic.009G128500 CBS domain containing protein, expressed K16302: metal transporter CNNM
11 Sobic.001G490900 growth regulator related protein, putative, expressed -
12 Sobic.001G289700 actin-related protein 2/3 complex subunit 2, putative, expressed K05758: actin related protein 2/3 complex, subunit 2
13 Sobic.006G220400 exonuclease, putative, expressed -
14 Sobic.006G106300 - K17675: SUPV3L1, ATP-dependent RNA helicase SUPV3L1/SUV3
15 Sobic.006G255900 tubulin/FtsZ domain containing protein, putative, expressed K03531: cell division protein FtsZ
16 Sobic.003G181700 GPI mannosyltransferase 2, putative, expressed K07542: GPI mannosyltransferase 2
17 Sobic.003G182300 zinc finger family protein, putative, expressed K16284: E3 ubiquitin-protein ligase SIS3
18 Sobic.001G203600 PPR repeat domain containing protein, putative, expressed -
19 Sobic.006G112500 CAF1 family ribonuclease containing protein, putative, expressed K01148: PARN, poly(A)-specific ribonuclease
20 Sobic.003G036500 fruit protein PKIWI502, putative, expressed -


Gene co-expression network
sample Sobic001G034000 Sobic001G034000 Sobic001G327000 Sobic001G327000 Sobic001G034000--Sobic001G327000 Sobic003G314300 Sobic003G314300 Sobic001G034000--Sobic003G314300 Sobic005G017200 Sobic005G017200 Sobic001G034000--Sobic005G017200 Sobic002G011100 Sobic002G011100 Sobic001G034000--Sobic002G011100 Sobic003G409900 Sobic003G409900 Sobic001G034000--Sobic003G409900 Sobic002G290100 Sobic002G290100 Sobic001G034000--Sobic002G290100 Sobic003G305900 Sobic003G305900 Sobic001G034000--Sobic003G305900 Sobic003G177800 Sobic003G177800 Sobic001G034000--Sobic003G177800 Sobic007G204000 Sobic007G204000 Sobic001G034000--Sobic007G204000 Sobic001G327000--Sobic001G034000 Sobic004G025700 Sobic004G025700 Sobic001G327000--Sobic004G025700 Sobic001G327000--Sobic007G204000 Sobic001G327000--Sobic003G409900 Sobic006G220400 Sobic006G220400 Sobic001G327000--Sobic006G220400 Sobic001G498800 Sobic001G498800 Sobic001G327000--Sobic001G498800 Sobic006G204700 Sobic006G204700 Sobic001G327000--Sobic006G204700 Sobic006G191000 Sobic006G191000 Sobic001G327000--Sobic006G191000 Sobic001G327000--Sobic002G290100 Sobic001G097500 Sobic001G097500 Sobic003G314300--Sobic001G097500 Sobic003G314300--Sobic005G017200 Sobic010G223400 Sobic010G223400 Sobic003G314300--Sobic010G223400 Sobic001G193100 Sobic001G193100 Sobic003G314300--Sobic001G193100 Sobic005G114500 Sobic005G114500 Sobic003G314300--Sobic005G114500 Sobic009G128500 Sobic009G128500 Sobic003G314300--Sobic009G128500 Sobic004G207900 Sobic004G207900 Sobic003G314300--Sobic004G207900 Sobic001G097900 Sobic001G097900 Sobic003G314300--Sobic001G097900 Sobic003G314300--Sobic002G290100 Sobic005G017200--Sobic003G314300 Sobic005G017200--Sobic001G097500 Sobic001G356100 Sobic001G356100 Sobic005G017200--Sobic001G356100 Sobic005G017200--Sobic009G128500 Sobic005G017200--Sobic005G114500 Sobic005G017200--Sobic001G193100 Sobic004G078700 Sobic004G078700 Sobic005G017200--Sobic004G078700 Sobic005G017200--Sobic002G290100 Sobic003G230600 Sobic003G230600 Sobic005G017200--Sobic003G230600 Sobic009G194000 Sobic009G194000 Sobic002G011100--Sobic009G194000 Sobic005G026400 Sobic005G026400 Sobic002G011100--Sobic005G026400 Sobic002G115500 Sobic002G115500 Sobic002G011100--Sobic002G115500 Sobic002G235200 Sobic002G235200 Sobic002G011100--Sobic002G235200 Sobic004G224600 Sobic004G224600 Sobic002G011100--Sobic004G224600 Sobic004G007900 Sobic004G007900 Sobic002G011100--Sobic004G007900 Sobic004G277400 Sobic004G277400 Sobic002G011100--Sobic004G277400 Sobic002G011100--Sobic001G034000 Sobic002G398700 Sobic002G398700 Sobic002G011100--Sobic002G398700 Sobic006G106300 Sobic006G106300 Sobic003G409900--Sobic006G106300 Sobic001G389200 Sobic001G389200 Sobic003G409900--Sobic001G389200 Sobic006G060000 Sobic006G060000 Sobic003G409900--Sobic006G060000 Sobic009G122500 Sobic009G122500 Sobic003G409900--Sobic009G122500 Sobic003G021600 Sobic003G021600 Sobic003G409900--Sobic003G021600 Sobic003G409900--Sobic010G223400 Sobic004G254800 Sobic004G254800 Sobic003G409900--Sobic004G254800 Sobic001G015400 Sobic001G015400 Sobic003G409900--Sobic001G015400 Sobic003G409900--Sobic009G128500 Sobic002G290100--Sobic001G356100 Sobic002G290100--Sobic003G314300 Sobic002G290100--Sobic009G128500 Sobic002G290100--Sobic005G017200 Sobic003G435400 Sobic003G435400 Sobic002G290100--Sobic003G435400 Sobic006G112500 Sobic006G112500 Sobic002G290100--Sobic006G112500 Sobic005G087300 Sobic005G087300 Sobic002G290100--Sobic005G087300 Sobic004G049200 Sobic004G049200 Sobic002G290100--Sobic004G049200 Sobic009G116900 Sobic009G116900 Sobic002G290100--Sobic009G116900 Sobic003G160500 Sobic003G160500 Sobic003G305900--Sobic003G160500 Sobic002G023100 Sobic002G023100 Sobic003G305900--Sobic002G023100 Sobic001G277300 Sobic001G277300 Sobic003G305900--Sobic001G277300 Sobic001G385000 Sobic001G385000 Sobic003G305900--Sobic001G385000 Sobic010G181600 Sobic010G181600 Sobic003G305900--Sobic010G181600 Sobic003G022000 Sobic003G022000 Sobic003G305900--Sobic003G022000 Sobic002G397900 Sobic002G397900 Sobic003G305900--Sobic002G397900 Sobic003G117800 Sobic003G117800 Sobic003G305900--Sobic003G117800 Sobic010G160300 Sobic010G160300 Sobic003G305900--Sobic010G160300 Sobic003G177800--Sobic009G122500 Sobic003G177800--Sobic001G034000 Sobic001G335000 Sobic001G335000 Sobic003G177800--Sobic001G335000 Sobic003G177800--Sobic010G223400 Sobic007G118075 Sobic007G118075 Sobic003G177800--Sobic007G118075 Sobic001G118000 Sobic001G118000 Sobic003G177800--Sobic001G118000 Sobic004G060300 Sobic004G060300 Sobic003G177800--Sobic004G060300 Sobic001G043200 Sobic001G043200 Sobic003G177800--Sobic001G043200 Sobic003G177800--Sobic002G115500 Sobic003G394500 Sobic003G394500 Sobic007G204000--Sobic003G394500 Sobic007G118500 Sobic007G118500 Sobic007G204000--Sobic007G118500 Sobic001G203600 Sobic001G203600 Sobic007G204000--Sobic001G203600 Sobic010G086300 Sobic010G086300 Sobic007G204000--Sobic010G086300 Sobic007G204000--Sobic003G409900 Sobic007G204000--Sobic001G043200 Sobic007G204000--Sobic006G191000 Sobic007G204000--Sobic006G220400 Sobic007G204000--Sobic001G385000
Octagon: transcription factors


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