Gene annotation
Transcriptome id Sobic.003G004300.1
Synonym Sb03g000560
Functional annotation KH domain containing protein, putative, expressed
UniProt C5XJK0
Pfam PF00013
Panther DB PTHR10288 PTHR10288:SF148
NCBI CDD KOG2190; PolyC-binding proteins alphaCP-1 and related KH domain proteins
KEGG Orthology K13162; poly(rC)-binding protein 2
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT5G15270 : RNA-binding KH domain-containing protein
RAP-DB (Rice) LOC_Os01g13470.1 : KH domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a036007
Brachypodium KQK03474
Barley HORVU3Hr1G057270.9 , HORVU3Hr1G057270.6 , HORVU3Hr1G057270.7 , HORVU3Hr1G057270.4 , HORVU3Hr1G057270.5 , HORVU3Hr1G057270.2 , HORVU3Hr1G057270.3 , HORVU3Hr1G057270.1 , HORVU3Hr1G057270.8 , HORVU3Hr1G057270.10 , HORVU3Hr1G057270.11 , HORVU3Hr1G057270.12 , HORVU3Hr1G057270.13 , HORVU3Hr1G057270.18 , HORVU3Hr1G057270.19 , HORVU3Hr1G057270.14 , HORVU3Hr1G057270.15 , HORVU3Hr1G057270.16 , HORVU3Hr1G057270.17 , HORVU3Hr1G057270.21 , HORVU3Hr1G057270.20 , HORVU3Hr1G057270.23 , HORVU3Hr1G057270.22
Wheat TraesCS3A02G158700 , TraesCS3A02G158700 , TraesCS3D02G166400 , TraesCS3B02G189700 , TraesCS3B02G189700 , TraesCS3B02G189700
Populus -


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cDNA sequences
Sobic.003G004300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G509500 glutamyl-tRNA synthetase, cytoplasmic, putative, expressed K01885: EARS, glutamyl-tRNA synthetase
2 Sobic.001G455800 methionyl-tRNA synthetase, putative, expressed K01874: MARS, methionyl-tRNA synthetase
3 Sobic.001G206500 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2
4 Sobic.001G447300 ATP-binding cassette sub-family E member 1, putative, expressed K06174: ABCE1, ATP-binding cassette, sub-family E, member 1
5 Sobic.009G020500 expressed protein -
6 Sobic.010G114900 expressed protein -
7 Sobic.001G376900 utp14 protein, putative, expressed K14567: U3 small nucleolar RNA-associated protein 14
8 Sobic.006G135900 cell division control protein 48 homolog B, putative, expressed -
9 Sobic.007G126500 - K14808: DDX54, ATP-dependent RNA helicase DDX54/DBP10
10 Sobic.001G008200 expressed protein K13211: GC-rich sequence DNA-binding factor
11 Sobic.003G036400 - K03254: translation initiation factor 3 subunit A
12 Sobic.004G088501 - K17302: COPB2, coatomer subunit beta'
13 Sobic.006G200700 elongation factor Tu, putative, expressed K14416: elongation factor 1 alpha-like protein
14 Sobic.001G017700 diphthamide biosynthesis protein, putative, expressed K17866: diphthamide biosynthesis protein 2
15 Sobic.004G149700 SEY1, putative, expressed -
16 Sobic.003G300300 la domain containing protein, expressed K15191: La-related protein 7
17 Sobic.002G428100 tim44-like domain containing protein, expressed K17804: mitochondrial import inner membrane translocase subunit TIM44
18 Sobic.006G055300 RNA polymerase III RPC4 domain containing protein, expressed K03026: RPC4, DNA-directed RNA polymerase III subunit RPC4
19 Sobic.001G524400 G-patch domain containing protein, expressed K11135: Pin2-interacting protein X1
20 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase


Gene co-expression network
sample Sobic003G004300 Sobic003G004300 Sobic001G509500 Sobic001G509500 Sobic003G004300--Sobic001G509500 Sobic001G455800 Sobic001G455800 Sobic003G004300--Sobic001G455800 Sobic001G206500 Sobic001G206500 Sobic003G004300--Sobic001G206500 Sobic001G447300 Sobic001G447300 Sobic003G004300--Sobic001G447300 Sobic009G020500 Sobic009G020500 Sobic003G004300--Sobic009G020500 Sobic010G114900 Sobic010G114900 Sobic003G004300--Sobic010G114900 Sobic001G376900 Sobic001G376900 Sobic003G004300--Sobic001G376900 Sobic006G135900 Sobic006G135900 Sobic003G004300--Sobic006G135900 Sobic007G126500 Sobic007G126500 Sobic003G004300--Sobic007G126500 Sobic001G509500--Sobic003G004300 Sobic008G098300 Sobic008G098300 Sobic001G509500--Sobic008G098300 Sobic006G182200 Sobic006G182200 Sobic001G509500--Sobic006G182200 Sobic003G188500 Sobic003G188500 Sobic001G509500--Sobic003G188500 Sobic001G008200 Sobic001G008200 Sobic001G509500--Sobic001G008200 Sobic004G264400 Sobic004G264400 Sobic001G509500--Sobic004G264400 Sobic009G056200 Sobic009G056200 Sobic001G509500--Sobic009G056200 Sobic004G048800 Sobic004G048800 Sobic001G509500--Sobic004G048800 Sobic006G200700 Sobic006G200700 Sobic001G509500--Sobic006G200700 Sobic009G016400 Sobic009G016400 Sobic001G455800--Sobic009G016400 Sobic002G150700 Sobic002G150700 Sobic001G455800--Sobic002G150700 Sobic006G196300 Sobic006G196300 Sobic001G455800--Sobic006G196300 Sobic004G340400 Sobic004G340400 Sobic001G455800--Sobic004G340400 Sobic002G371700 Sobic002G371700 Sobic001G455800--Sobic002G371700 Sobic001G455800--Sobic001G447300 Sobic002G142900 Sobic002G142900 Sobic001G455800--Sobic002G142900 Sobic008G160000 Sobic008G160000 Sobic001G455800--Sobic008G160000 Sobic001G145400 Sobic001G145400 Sobic001G455800--Sobic001G145400 Sobic009G042100 Sobic009G042100 Sobic001G206500--Sobic009G042100 Sobic001G206500--Sobic001G455800 Sobic001G206500--Sobic003G004300 Sobic001G098400 Sobic001G098400 Sobic001G206500--Sobic001G098400 Sobic003G222000 Sobic003G222000 Sobic001G206500--Sobic003G222000 Sobic010G081700 Sobic010G081700 Sobic001G206500--Sobic010G081700 Sobic004G031300 Sobic004G031300 Sobic001G206500--Sobic004G031300 Sobic002G428100 Sobic002G428100 Sobic001G206500--Sobic002G428100 Sobic001G004100 Sobic001G004100 Sobic001G206500--Sobic001G004100 Sobic006G136400 Sobic006G136400 Sobic001G447300--Sobic006G136400 Sobic008G055900 Sobic008G055900 Sobic001G447300--Sobic008G055900 Sobic008G099800 Sobic008G099800 Sobic001G447300--Sobic008G099800 Sobic006G166200 Sobic006G166200 Sobic001G447300--Sobic006G166200 Sobic001G447300--Sobic001G455800 Sobic004G145000 Sobic004G145000 Sobic001G447300--Sobic004G145000 Sobic001G447300--Sobic002G371700 Sobic004G053500 Sobic004G053500 Sobic001G447300--Sobic004G053500 Sobic004G353000 Sobic004G353000 Sobic001G447300--Sobic004G353000 Sobic006G224800 Sobic006G224800 Sobic009G020500--Sobic006G224800 Sobic009G119000 Sobic009G119000 Sobic009G020500--Sobic009G119000 Sobic002G245000 Sobic002G245000 Sobic009G020500--Sobic002G245000 Sobic009G255600 Sobic009G255600 Sobic009G020500--Sobic009G255600 Sobic003G062300 Sobic003G062300 Sobic009G020500--Sobic003G062300 Sobic009G126300 Sobic009G126300 Sobic009G020500--Sobic009G126300 Sobic002G422100 Sobic002G422100 Sobic009G020500--Sobic002G422100 Sobic003G212900 Sobic003G212900 Sobic009G020500--Sobic003G212900 Sobic002G344600 Sobic002G344600 Sobic009G020500--Sobic002G344600 Sobic007G077900 Sobic007G077900 Sobic010G114900--Sobic007G077900 Sobic004G085000 Sobic004G085000 Sobic010G114900--Sobic004G085000 Sobic001G453400 Sobic001G453400 Sobic010G114900--Sobic001G453400 Sobic003G312100 Sobic003G312100 Sobic010G114900--Sobic003G312100 Sobic007G168300 Sobic007G168300 Sobic010G114900--Sobic007G168300 Sobic010G003400 Sobic010G003400 Sobic010G114900--Sobic010G003400 Sobic007G155500 Sobic007G155500 Sobic010G114900--Sobic007G155500 Sobic005G010900 Sobic005G010900 Sobic010G114900--Sobic005G010900 Sobic001G052400 Sobic001G052400 Sobic010G114900--Sobic001G052400 Sobic003G042400 Sobic003G042400 Sobic001G376900--Sobic003G042400 Sobic001G376900--Sobic001G453400 Sobic001G376900--Sobic007G126500 Sobic006G086600 Sobic006G086600 Sobic001G376900--Sobic006G086600 Sobic009G158100 Sobic009G158100 Sobic001G376900--Sobic009G158100 Sobic001G376900--Sobic007G168300 Sobic004G224600 Sobic004G224600 Sobic001G376900--Sobic004G224600 Sobic001G376900--Sobic001G052400 Sobic001G393900 Sobic001G393900 Sobic001G376900--Sobic001G393900 Sobic006G135900--Sobic008G160000 Sobic006G135900--Sobic001G455800 Sobic006G235700 Sobic006G235700 Sobic006G135900--Sobic006G235700 Sobic001G524400 Sobic001G524400 Sobic006G135900--Sobic001G524400 Sobic009G138700 Sobic009G138700 Sobic006G135900--Sobic009G138700 Sobic007G184500 Sobic007G184500 Sobic006G135900--Sobic007G184500 Sobic009G235000 Sobic009G235000 Sobic006G135900--Sobic009G235000 Sobic008G103300 Sobic008G103300 Sobic006G135900--Sobic008G103300 Sobic008G016100 Sobic008G016100 Sobic006G135900--Sobic008G016100 Sobic007G126500--Sobic001G376900 Sobic007G126500--Sobic003G042400 Sobic006G013100 Sobic006G013100 Sobic007G126500--Sobic006G013100 Sobic001G453000 Sobic001G453000 Sobic007G126500--Sobic001G453000 Sobic007G126500--Sobic001G453400 Sobic007G126500--Sobic001G393900 Sobic007G126500--Sobic009G158100 Sobic007G126500--Sobic001G145400 Sobic007G126500--Sobic007G168300
Octagon: transcription factors


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