Gene annotation
Transcriptome id Sobic.003G039500.1
Synonym Sb03g003540
Functional annotation expressed protein
UniProt C5XML8
Pfam PF16575
Panther DB PTHR12755 PTHR12755:SF3
NCBI CDD KOG2749; mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1
KEGG Orthology K06947; GRC3, polynucleotide 5'-hydroxyl-kinase GRC3/NOL9
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G11010 : Pre-mRNA cleavage complex II protein family
RAP-DB (Rice) LOC_Os01g08850.1 : expressed protein
MaizeGDB (Corn) Zm00025a023138
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.003G039500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G460500 T-complex protein, putative, expressed K09495: CCT3, T-complex protein 1 subunit gamma
2 Sobic.003G259600 ORC4 - Putative origin recognition complex subunit 4, expressed K02606: origin recognition complex subunit 4
3 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
4 Sobic.004G224600 expressed protein -
5 Sobic.003G376500 SET domain containing protein, expressed K05302: N-lysine methyltransferase SETD6
6 Sobic.010G205900 WD repeat-containing protein, putative, expressed K14554: UTP21, U3 small nucleolar RNA-associated protein 21
7 Sobic.004G356200 expressed protein -
8 Sobic.003G360300 exostosin family domain containing protein, expressed -
9 Sobic.002G371600 Spc97 / Spc98 family protein, putative, expressed K16572: TUBGCP5, gamma-tubulin complex component 5
10 Sobic.004G322300 nucleotide binding protein, putative, expressed K03351: anaphase-promoting complex subunit 4
11 Sobic.002G372500 exportin 1, putative, expressed K14288: exportin-T
12 Sobic.004G038100 expressed protein K14303: NUP160, nuclear pore complex protein Nup160
13 Sobic.005G000300 RNase P subunit p30, putative, expressed K03539: RPP1, ribonuclease P/MRP protein subunit RPP1
14 Sobic.004G289400 mitochondrial carrier protein, putative, expressed -
15 Sobic.001G024000 expressed protein K14844: pumilio homology domain family member 6
16 Sobic.001G488100 OsNucAP1 - Putative Nucleoporin Autopeptidase homologue, expressed K14297: NUP98, ADAR2, nuclear pore complex protein Nup98-Nup96
17 Sobic.006G251600 exosome complex exonuclease rrp4, putative, expressed K03679: RRP4, exosome complex component RRP4
18 Sobic.006G193300 nucleolar complex protein, putative, expressed K14771: NOC4, U3 small nucleolar RNA-associated protein 19
19 Sobic.010G188000 elongation factor, putative, expressed K12852: 116 kDa U5 small nuclear ribonucleoprotein component
20 Sobic.007G089800 SET domain containing protein, expressed K19199: protein-histidine N-methyltransferase


Gene co-expression network
sample Sobic003G039500 Sobic003G039500 Sobic001G460500 Sobic001G460500 Sobic003G039500--Sobic001G460500 Sobic003G259600 Sobic003G259600 Sobic003G039500--Sobic003G259600 Sobic001G373000 Sobic001G373000 Sobic003G039500--Sobic001G373000 Sobic004G224600 Sobic004G224600 Sobic003G039500--Sobic004G224600 Sobic003G376500 Sobic003G376500 Sobic003G039500--Sobic003G376500 Sobic010G205900 Sobic010G205900 Sobic003G039500--Sobic010G205900 Sobic004G356200 Sobic004G356200 Sobic003G039500--Sobic004G356200 Sobic003G360300 Sobic003G360300 Sobic003G039500--Sobic003G360300 Sobic002G371600 Sobic002G371600 Sobic003G039500--Sobic002G371600 Sobic005G163700 Sobic005G163700 Sobic001G460500--Sobic005G163700 Sobic002G423500 Sobic002G423500 Sobic001G460500--Sobic002G423500 Sobic002G014400 Sobic002G014400 Sobic001G460500--Sobic002G014400 Sobic004G208500 Sobic004G208500 Sobic001G460500--Sobic004G208500 Sobic010G081700 Sobic010G081700 Sobic001G460500--Sobic010G081700 Sobic004G047200 Sobic004G047200 Sobic001G460500--Sobic004G047200 Sobic002G412700 Sobic002G412700 Sobic001G460500--Sobic002G412700 Sobic001G251600 Sobic001G251600 Sobic001G460500--Sobic001G251600 Sobic003G099300 Sobic003G099300 Sobic001G460500--Sobic003G099300 Sobic003G361400 Sobic003G361400 Sobic003G259600--Sobic003G361400 Sobic003G259600--Sobic003G360300 Sobic003G259600--Sobic001G373000 Sobic003G331000 Sobic003G331000 Sobic003G259600--Sobic003G331000 Sobic004G038100 Sobic004G038100 Sobic003G259600--Sobic004G038100 Sobic010G269300 Sobic010G269300 Sobic003G259600--Sobic010G269300 Sobic003G028400 Sobic003G028400 Sobic003G259600--Sobic003G028400 Sobic002G142700 Sobic002G142700 Sobic003G259600--Sobic002G142700 Sobic001G334100 Sobic001G334100 Sobic003G259600--Sobic001G334100 Sobic009G104900 Sobic009G104900 Sobic001G373000--Sobic009G104900 Sobic001G373000--Sobic004G038100 Sobic002G005000 Sobic002G005000 Sobic001G373000--Sobic002G005000 Sobic001G373000--Sobic003G259600 Sobic001G373000--Sobic003G361400 Sobic010G188000 Sobic010G188000 Sobic001G373000--Sobic010G188000 Sobic002G126800 Sobic002G126800 Sobic001G373000--Sobic002G126800 Sobic001G013300 Sobic001G013300 Sobic001G373000--Sobic001G013300 Sobic005G028100 Sobic005G028100 Sobic001G373000--Sobic005G028100 Sobic006G002800 Sobic006G002800 Sobic004G224600--Sobic006G002800 Sobic003G146600 Sobic003G146600 Sobic004G224600--Sobic003G146600 Sobic001G376900 Sobic001G376900 Sobic004G224600--Sobic001G376900 Sobic006G125500 Sobic006G125500 Sobic004G224600--Sobic006G125500 Sobic002G235200 Sobic002G235200 Sobic004G224600--Sobic002G235200 Sobic009G246500 Sobic009G246500 Sobic004G224600--Sobic009G246500 Sobic003G042400 Sobic003G042400 Sobic004G224600--Sobic003G042400 Sobic001G145400 Sobic001G145400 Sobic004G224600--Sobic001G145400 Sobic006G086600 Sobic006G086600 Sobic004G224600--Sobic006G086600 Sobic003G376500--Sobic010G205900 Sobic003G376500--Sobic001G373000 Sobic001G408600 Sobic001G408600 Sobic003G376500--Sobic001G408600 Sobic006G178100 Sobic006G178100 Sobic003G376500--Sobic006G178100 Sobic003G376500--Sobic005G028100 Sobic003G376500--Sobic003G259600 Sobic003G376500--Sobic001G334100 Sobic003G376500--Sobic003G039500 Sobic003G376500--Sobic004G224600 Sobic008G049100 Sobic008G049100 Sobic010G205900--Sobic008G049100 Sobic003G123200 Sobic003G123200 Sobic010G205900--Sobic003G123200 Sobic010G205900--Sobic009G246500 Sobic010G205900--Sobic005G028100 Sobic002G071400 Sobic002G071400 Sobic010G205900--Sobic002G071400 Sobic005G098800 Sobic005G098800 Sobic010G205900--Sobic005G098800 Sobic008G163500 Sobic008G163500 Sobic010G205900--Sobic008G163500 Sobic003G199300 Sobic003G199300 Sobic010G205900--Sobic003G199300 Sobic001G024000 Sobic001G024000 Sobic010G205900--Sobic001G024000 Sobic001G200200 Sobic001G200200 Sobic004G356200--Sobic001G200200 Sobic004G356200--Sobic002G371600 Sobic005G031000 Sobic005G031000 Sobic004G356200--Sobic005G031000 Sobic001G248100 Sobic001G248100 Sobic004G356200--Sobic001G248100 Sobic002G137601 Sobic002G137601 Sobic004G356200--Sobic002G137601 Sobic002G160700 Sobic002G160700 Sobic004G356200--Sobic002G160700 Sobic007G047600 Sobic007G047600 Sobic004G356200--Sobic007G047600 Sobic004G030400 Sobic004G030400 Sobic004G356200--Sobic004G030400 Sobic001G085800 Sobic001G085800 Sobic004G356200--Sobic001G085800 Sobic003G360300--Sobic003G259600 Sobic001G123600 Sobic001G123600 Sobic003G360300--Sobic001G123600 Sobic003G360300--Sobic010G269300 Sobic003G360300--Sobic007G047600 Sobic006G179300 Sobic006G179300 Sobic003G360300--Sobic006G179300 Sobic003G360300--Sobic002G142700 Sobic004G342300 Sobic004G342300 Sobic003G360300--Sobic004G342300 Sobic004G277400 Sobic004G277400 Sobic003G360300--Sobic004G277400 Sobic008G080500 Sobic008G080500 Sobic003G360300--Sobic008G080500 Sobic001G373800 Sobic001G373800 Sobic002G371600--Sobic001G373800 Sobic006G029100 Sobic006G029100 Sobic002G371600--Sobic006G029100 Sobic006G245900 Sobic006G245900 Sobic002G371600--Sobic006G245900 Sobic002G371600--Sobic004G356200 Sobic003G308500 Sobic003G308500 Sobic002G371600--Sobic003G308500 Sobic002G371600--Sobic002G160700 Sobic003G052800 Sobic003G052800 Sobic002G371600--Sobic003G052800 Sobic001G451300 Sobic001G451300 Sobic002G371600--Sobic001G451300 Sobic010G262100 Sobic010G262100 Sobic002G371600--Sobic010G262100
Octagon: transcription factors


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