Gene annotation
Transcriptome id Sobic.010G219000.5,Sobic.010G219000.4,Sobic.010G219000.3
Synonym
Functional annotation tRNA pseudouridine synthase family protein, putative, expressed
UniProt A0A1W0VU60 , A0A1W0VU61
Pfam PF01416
Panther DB PTHR11142 PTHR11142:SF10
NCBI CDD KOG4393; Predicted pseudouridylate synthase
KEGG Orthology -
Gene Ontology GO:0009982; pseudouridine synthase activity GO:0009451RNA modification GO:0003723RNA binding GO:0001522pseudouridine synthesis


Orthologs (automatic annotation)
TAIR AT5G35400 : Pseudouridine synthase family protein
RAP-DB (Rice) LOC_Os06g45250.1 : tRNA pseudouridine synthase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a041973
Brachypodium -
Barley HORVU7Hr1G109580.26 , HORVU7Hr1G109580.25 , HORVU7Hr1G109580.24 , HORVU7Hr1G109580.22 , HORVU7Hr1G109580.21 , HORVU7Hr1G109580.20 , HORVU7Hr1G109580.4 , HORVU7Hr1G109580.5 , HORVU7Hr1G109580.6 , HORVU7Hr1G109580.7 , HORVU7Hr1G109580.2 , HORVU7Hr1G109580.3 , HORVU7Hr1G109580.17 , HORVU7Hr1G109580.14 , HORVU7Hr1G109580.15 , HORVU7Hr1G109580.12 , HORVU7Hr1G109580.13 , HORVU7Hr1G109580.11
Wheat TraesCS7B02G391100 , TraesCS7B02G391100 , TraesCS7D02G474500 , TraesCS7D02G474500 , TraesCS7D02G474500 , TraesCS7A02G487800 , TraesCS7A02G487800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G405500 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11841: USP10, ubiquitin carboxyl-terminal hydrolase 10
2 Sobic.010G228500 rab geranylgeranyl transferase like protein, putative, expressed K14050: geranylgeranyl transferase type-2 subunit alpha
3 Sobic.010G266500 BRE, putative, expressed K12173: BRE, BRCA1-A complex subunit BRE
4 Sobic.001G023800 expressed protein -
5 Sobic.006G200700 elongation factor Tu, putative, expressed K14416: elongation factor 1 alpha-like protein
6 Sobic.002G295500 expressed protein -
7 Sobic.004G277200 GPI transamidase subunit PIG-U domain containing protein, expressed K05293: GPI-anchor transamidase subunit U
8 Sobic.008G164600 expressed protein -
9 Sobic.008G099800 expressed protein -
10 Sobic.006G240100 BRCA1-associated protein, putative, expressed K10632: BRCA1-associated protein
11 Sobic.001G259000 initiation factor 2 subunit family domain containing protein, expressed K03754: translation initiation factor eIF-2B subunit beta
12 Sobic.008G103300 vacuolar protein sorting-associated protein 26, putative, expressed K18466: vacuolar protein sorting-associated protein 26
13 Sobic.010G034000 zinc carboxypeptidase family protein, putative, expressed K07752: carboxypeptidase D
14 Sobic.007G077900 zinc finger domain, LSD1 subclass family protein, expressed -
15 Sobic.001G142100 WD domain, G-beta repeat domain containing protein, expressed K04536: guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
16 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
17 Sobic.006G067600 histone deacetylase, putative, expressed K06067: histone deacetylase 1/2
18 Sobic.004G135400 expressed protein -
19 Sobic.004G339100 endoribonuclease, putative, expressed K06927: diphthine-ammonia ligase
20 Sobic.009G143800 - K14806: DDX31, ATP-dependent RNA helicase DDX31/DBP7


Gene co-expression network
sample Sobic010G219000 Sobic010G219000 Sobic002G405500 Sobic002G405500 Sobic010G219000--Sobic002G405500 Sobic010G228500 Sobic010G228500 Sobic010G219000--Sobic010G228500 Sobic010G266500 Sobic010G266500 Sobic010G219000--Sobic010G266500 Sobic001G023800 Sobic001G023800 Sobic010G219000--Sobic001G023800 Sobic006G200700 Sobic006G200700 Sobic010G219000--Sobic006G200700 Sobic002G295500 Sobic002G295500 Sobic010G219000--Sobic002G295500 Sobic004G277200 Sobic004G277200 Sobic010G219000--Sobic004G277200 Sobic008G164600 Sobic008G164600 Sobic010G219000--Sobic008G164600 Sobic008G099800 Sobic008G099800 Sobic010G219000--Sobic008G099800 Sobic006G080400 Sobic006G080400 Sobic002G405500--Sobic006G080400 Sobic007G077900 Sobic007G077900 Sobic002G405500--Sobic007G077900 Sobic002G405500--Sobic010G219000 Sobic007G019300 Sobic007G019300 Sobic002G405500--Sobic007G019300 Sobic004G155600 Sobic004G155600 Sobic002G405500--Sobic004G155600 Sobic004G223300 Sobic004G223300 Sobic002G405500--Sobic004G223300 Sobic001G536000 Sobic001G536000 Sobic002G405500--Sobic001G536000 Sobic002G405500--Sobic010G228500 Sobic001G453000 Sobic001G453000 Sobic002G405500--Sobic001G453000 Sobic002G308500 Sobic002G308500 Sobic010G228500--Sobic002G308500 Sobic010G228500--Sobic004G277200 Sobic008G103300 Sobic008G103300 Sobic010G228500--Sobic008G103300 Sobic010G228500--Sobic010G219000 Sobic010G228500--Sobic008G099800 Sobic002G189400 Sobic002G189400 Sobic010G228500--Sobic002G189400 Sobic004G339100 Sobic004G339100 Sobic010G228500--Sobic004G339100 Sobic010G228500--Sobic002G405500 Sobic007G225100 Sobic007G225100 Sobic010G228500--Sobic007G225100 Sobic010G266500--Sobic008G164600 Sobic007G187600 Sobic007G187600 Sobic010G266500--Sobic007G187600 Sobic010G266500--Sobic001G023800 Sobic001G461400 Sobic001G461400 Sobic010G266500--Sobic001G461400 Sobic002G371700 Sobic002G371700 Sobic010G266500--Sobic002G371700 Sobic003G416700 Sobic003G416700 Sobic010G266500--Sobic003G416700 Sobic002G145800 Sobic002G145800 Sobic010G266500--Sobic002G145800 Sobic010G266500--Sobic004G155600 Sobic010G118000 Sobic010G118000 Sobic010G266500--Sobic010G118000 Sobic001G023800--Sobic010G266500 Sobic001G023800--Sobic007G187600 Sobic010G186600 Sobic010G186600 Sobic001G023800--Sobic010G186600 Sobic002G005000 Sobic002G005000 Sobic001G023800--Sobic002G005000 Sobic001G373000 Sobic001G373000 Sobic001G023800--Sobic001G373000 Sobic003G427100 Sobic003G427100 Sobic001G023800--Sobic003G427100 Sobic001G013300 Sobic001G013300 Sobic001G023800--Sobic001G013300 Sobic001G023800--Sobic008G164600 Sobic001G291800 Sobic001G291800 Sobic001G023800--Sobic001G291800 Sobic004G353000 Sobic004G353000 Sobic006G200700--Sobic004G353000 Sobic006G208500 Sobic006G208500 Sobic006G200700--Sobic006G208500 Sobic008G014500 Sobic008G014500 Sobic006G200700--Sobic008G014500 Sobic010G116600 Sobic010G116600 Sobic006G200700--Sobic010G116600 Sobic006G204800 Sobic006G204800 Sobic006G200700--Sobic006G204800 Sobic001G522600 Sobic001G522600 Sobic006G200700--Sobic001G522600 Sobic003G006400 Sobic003G006400 Sobic006G200700--Sobic003G006400 Sobic006G200700--Sobic004G277200 Sobic009G044800 Sobic009G044800 Sobic006G200700--Sobic009G044800 Sobic003G104000 Sobic003G104000 Sobic002G295500--Sobic003G104000 Sobic002G295500--Sobic009G044800 Sobic002G295500--Sobic003G416700 Sobic006G224800 Sobic006G224800 Sobic002G295500--Sobic006G224800 Sobic002G295500--Sobic004G353000 Sobic007G183900 Sobic007G183900 Sobic002G295500--Sobic007G183900 Sobic006G240100 Sobic006G240100 Sobic002G295500--Sobic006G240100 Sobic007G132100 Sobic007G132100 Sobic002G295500--Sobic007G132100 Sobic002G295500--Sobic006G200700 Sobic004G135400 Sobic004G135400 Sobic004G277200--Sobic004G135400 Sobic004G277200--Sobic008G099800 Sobic010G118950 Sobic010G118950 Sobic004G277200--Sobic010G118950 Sobic004G277200--Sobic007G225100 Sobic004G277200--Sobic003G104000 Sobic004G277200--Sobic006G208500 Sobic003G332500 Sobic003G332500 Sobic004G277200--Sobic003G332500 Sobic004G277200--Sobic006G200700 Sobic009G201700 Sobic009G201700 Sobic004G277200--Sobic009G201700 Sobic008G164600--Sobic010G266500 Sobic006G040800 Sobic006G040800 Sobic008G164600--Sobic006G040800 Sobic001G145400 Sobic001G145400 Sobic008G164600--Sobic001G145400 Sobic008G164600--Sobic007G225100 Sobic004G256500 Sobic004G256500 Sobic008G164600--Sobic004G256500 Sobic008G164600--Sobic010G118000 Sobic008G164600--Sobic002G145800 Sobic004G246100 Sobic004G246100 Sobic008G164600--Sobic004G246100 Sobic009G255600 Sobic009G255600 Sobic008G164600--Sobic009G255600 Sobic006G012500 Sobic006G012500 Sobic008G099800--Sobic006G012500 Sobic001G534800 Sobic001G534800 Sobic008G099800--Sobic001G534800 Sobic008G099800--Sobic004G135400 Sobic001G347500 Sobic001G347500 Sobic008G099800--Sobic001G347500 Sobic001G281100 Sobic001G281100 Sobic008G099800--Sobic001G281100 Sobic004G113400 Sobic004G113400 Sobic008G099800--Sobic004G113400 Sobic004G039600 Sobic004G039600 Sobic008G099800--Sobic004G039600 Sobic003G072200 Sobic003G072200 Sobic008G099800--Sobic003G072200 Sobic001G065000 Sobic001G065000 Sobic008G099800--Sobic001G065000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.