Gene annotation
Transcriptome id Sobic.004G325600.1
Synonym serine/arginine-rich (SR) family, Sb04g035540, sb-RSZ19
Functional annotation Putative splicing factor (PubMedID : 24356560)
RNA recognition motif containing protein, expressed
UniProt C5XUC2 , M1GSA7
Pfam PF00098 PF00076
Panther DB PTHR24012
NCBI CDD -
KEGG Orthology K12896; splicing factor, arginine/serine-rich 7
Gene Ontology GO:0008270; zinc ion binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT4G31580 : serine/arginine-rich 22
RAP-DB (Rice) LOC_Os02g54770.1 : RNA recognition motif containing protein, expressed
MaizeGDB (Corn) Zm00025a012491 , Zm00025a032973 , Zm00025a022419 , Zm00025a022718
Brachypodium PNT76316 , KQK19210 , KQK19211 , KQK19209 , KQK19208
Barley HORVU7Hr1G031320.13 , HORVU7Hr1G031320.18 , HORVU7Hr1G031320.19 , HORVU7Hr1G031320.10 , HORVU7Hr1G031320.11 , HORVU7Hr1G031320.17 , HORVU7Hr1G031320.14 , HORVU7Hr1G031320.15 , HORVU7Hr1G031320.1 , HORVU7Hr1G031320.2 , HORVU7Hr1G031320.3 , HORVU7Hr1G031320.4 , HORVU7Hr1G031320.5 , HORVU7Hr1G031320.6 , HORVU7Hr1G031320.7 , HORVU7Hr1G031320.8 , HORVU7Hr1G031320.9 , HORVU7Hr1G031320.20 , HORVU7Hr1G031320.12 , HORVU7Hr1G031320.16
Wheat TraesCSU02G104300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G527300 - K14777: DDX47, ATP-dependent RNA helicase DDX47/RRP3
2 Sobic.001G291800 eukaryotic translation initiation factor 3 subunit B, putative, expressed K03253: translation initiation factor 3 subunit B
3 Sobic.008G147200 tubulin, putative, expressed -
4 Sobic.004G133700 apoptosis inhibitor 5, putative, expressed -
5 Sobic.002G145800 flowering time control protein FCA, putative, expressed -
6 Sobic.005G114400 TBC domain containing protein, expressed -
7 Sobic.002G257200 uridine/cytidine kinase-like 1, putative, expressed K00876: udk, uridine kinase
8 Sobic.010G009800 OsFBX182 - F-box domain containing protein, expressed -
9 Sobic.008G057000 SWIRM domain containing protein, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
10 Sobic.009G164000 tentative name(PubMedID : 31536532)@cysteinyl-tRNA synthetase, putative, expressed K01883: CARS, cysteinyl-tRNA synthetase
11 Sobic.007G027700 expressed protein -
12 Sobic.001G515000 protein-S-isoprenylcysteine O-methyltransferase. tax, putative, expressed K00587: ICMT, protein-S-isoprenylcysteine O-methyltransferase
13 Sobic.001G168900 bacterial transferase hexapeptide domain containing protein, expressed K03241: translation initiation factor eIF-2B subunit gamma
14 Sobic.001G178600 metal ion binding protein, putative, expressed -
15 Sobic.001G039600 U-box domain-containing protein, putative, expressed -
16 Sobic.004G246900 ankyrin repeat-containing protein, putative, expressed -
17 Sobic.004G176400 ATP binding protein, putative, expressed K06883: uncharacterized protein
18 Sobic.010G237900 RNA recognition motif containing protein, putative, expressed -
19 Sobic.010G096000 OsDegp10 - Putative Deg protease homologue, expressed -
20 Sobic.007G091600 proline rich protein 3, putative, expressed -


Gene co-expression network
sample Sobic004G325600 Sobic004G325600 Sobic001G527300 Sobic001G527300 Sobic004G325600--Sobic001G527300 Sobic001G291800 Sobic001G291800 Sobic004G325600--Sobic001G291800 Sobic008G147200 Sobic008G147200 Sobic004G325600--Sobic008G147200 Sobic004G133700 Sobic004G133700 Sobic004G325600--Sobic004G133700 Sobic002G145800 Sobic002G145800 Sobic004G325600--Sobic002G145800 Sobic005G114400 Sobic005G114400 Sobic004G325600--Sobic005G114400 Sobic002G257200 Sobic002G257200 Sobic004G325600--Sobic002G257200 Sobic010G009800 Sobic010G009800 Sobic004G325600--Sobic010G009800 Sobic008G057000 Sobic008G057000 Sobic004G325600--Sobic008G057000 Sobic004G156800 Sobic004G156800 Sobic001G527300--Sobic004G156800 Sobic001G527300--Sobic008G147200 Sobic009G143800 Sobic009G143800 Sobic001G527300--Sobic009G143800 Sobic001G527300--Sobic001G291800 Sobic010G247400 Sobic010G247400 Sobic001G527300--Sobic010G247400 Sobic010G007100 Sobic010G007100 Sobic001G527300--Sobic010G007100 Sobic006G226300 Sobic006G226300 Sobic001G527300--Sobic006G226300 Sobic001G168900 Sobic001G168900 Sobic001G527300--Sobic001G168900 Sobic004G340400 Sobic004G340400 Sobic001G527300--Sobic004G340400 Sobic001G291800--Sobic004G340400 Sobic001G145400 Sobic001G145400 Sobic001G291800--Sobic001G145400 Sobic005G115500 Sobic005G115500 Sobic001G291800--Sobic005G115500 Sobic004G353000 Sobic004G353000 Sobic001G291800--Sobic004G353000 Sobic010G186600 Sobic010G186600 Sobic001G291800--Sobic010G186600 Sobic009G255600 Sobic009G255600 Sobic001G291800--Sobic009G255600 Sobic001G291800--Sobic008G147200 Sobic007G039400 Sobic007G039400 Sobic001G291800--Sobic007G039400 Sobic001G291800--Sobic001G168900 Sobic004G321700 Sobic004G321700 Sobic008G147200--Sobic004G321700 Sobic005G137700 Sobic005G137700 Sobic008G147200--Sobic005G137700 Sobic006G269800 Sobic006G269800 Sobic008G147200--Sobic006G269800 Sobic008G147200--Sobic010G186600 Sobic008G147200--Sobic002G145800 Sobic008G147200--Sobic010G007100 Sobic001G346900 Sobic001G346900 Sobic008G147200--Sobic001G346900 Sobic003G042400 Sobic003G042400 Sobic008G147200--Sobic003G042400 Sobic008G147200--Sobic001G291800 Sobic004G133700--Sobic001G291800 Sobic003G083900 Sobic003G083900 Sobic004G133700--Sobic003G083900 Sobic001G226000 Sobic001G226000 Sobic004G133700--Sobic001G226000 Sobic005G025800 Sobic005G025800 Sobic004G133700--Sobic005G025800 Sobic007G119900 Sobic007G119900 Sobic004G133700--Sobic007G119900 Sobic005G199200 Sobic005G199200 Sobic004G133700--Sobic005G199200 Sobic004G133700--Sobic001G168900 Sobic001G152000 Sobic001G152000 Sobic004G133700--Sobic001G152000 Sobic007G183300 Sobic007G183300 Sobic004G133700--Sobic007G183300 Sobic002G145800--Sobic006G269800 Sobic003G416700 Sobic003G416700 Sobic002G145800--Sobic003G416700 Sobic002G145800--Sobic007G183300 Sobic001G087600 Sobic001G087600 Sobic002G145800--Sobic001G087600 Sobic001G051700 Sobic001G051700 Sobic002G145800--Sobic001G051700 Sobic003G062300 Sobic003G062300 Sobic002G145800--Sobic003G062300 Sobic002G145800--Sobic008G147200 Sobic001G023000 Sobic001G023000 Sobic002G145800--Sobic001G023000 Sobic002G145800--Sobic010G186600 Sobic003G220700 Sobic003G220700 Sobic005G114400--Sobic003G220700 Sobic007G000800 Sobic007G000800 Sobic005G114400--Sobic007G000800 Sobic002G259800 Sobic002G259800 Sobic005G114400--Sobic002G259800 Sobic001G246500 Sobic001G246500 Sobic005G114400--Sobic001G246500 Sobic009G151200 Sobic009G151200 Sobic005G114400--Sobic009G151200 Sobic002G389800 Sobic002G389800 Sobic005G114400--Sobic002G389800 Sobic006G091000 Sobic006G091000 Sobic005G114400--Sobic006G091000 Sobic001G424600 Sobic001G424600 Sobic005G114400--Sobic001G424600 Sobic004G345700 Sobic004G345700 Sobic005G114400--Sobic004G345700 Sobic001G425800 Sobic001G425800 Sobic002G257200--Sobic001G425800 Sobic005G158300 Sobic005G158300 Sobic002G257200--Sobic005G158300 Sobic004G226600 Sobic004G226600 Sobic002G257200--Sobic004G226600 Sobic003G316700 Sobic003G316700 Sobic002G257200--Sobic003G316700 Sobic002G257200--Sobic010G009800 Sobic004G316700 Sobic004G316700 Sobic002G257200--Sobic004G316700 Sobic002G257200--Sobic004G325600 Sobic004G286500 Sobic004G286500 Sobic002G257200--Sobic004G286500 Sobic003G273500 Sobic003G273500 Sobic002G257200--Sobic003G273500 Sobic007G165900 Sobic007G165900 Sobic010G009800--Sobic007G165900 Sobic003G379200 Sobic003G379200 Sobic010G009800--Sobic003G379200 Sobic003G104000 Sobic003G104000 Sobic010G009800--Sobic003G104000 Sobic006G261400 Sobic006G261400 Sobic010G009800--Sobic006G261400 Sobic001G395100 Sobic001G395100 Sobic010G009800--Sobic001G395100 Sobic002G052700 Sobic002G052700 Sobic010G009800--Sobic002G052700 Sobic001G515000 Sobic001G515000 Sobic010G009800--Sobic001G515000 Sobic001G096000 Sobic001G096000 Sobic010G009800--Sobic001G096000 Sobic008G124900 Sobic008G124900 Sobic010G009800--Sobic008G124900 Sobic003G409200 Sobic003G409200 Sobic008G057000--Sobic003G409200 Sobic005G200800 Sobic005G200800 Sobic008G057000--Sobic005G200800 Sobic008G057000--Sobic001G346900 Sobic004G086200 Sobic004G086200 Sobic008G057000--Sobic004G086200 Sobic002G148400 Sobic002G148400 Sobic008G057000--Sobic002G148400 Sobic010G279900 Sobic010G279900 Sobic008G057000--Sobic010G279900 Sobic001G484200 Sobic001G484200 Sobic008G057000--Sobic001G484200 Sobic009G032200 Sobic009G032200 Sobic008G057000--Sobic009G032200 Sobic008G057000--Sobic007G183300
Octagon: transcription factors


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