Gene annotation
Transcriptome id Sobic.001G039600.1
Synonym Sb01g003650
Functional annotation U-box domain-containing protein, putative, expressed
UniProt C5WV61
Pfam -
Panther DB PTHR33644 PTHR33644:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G05230 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os03g60140.1 : U-box domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a008748
Brachypodium KQK12501
Barley -
Wheat TraesCS5B02G481600 , TraesCS5B02G481600 , TraesCS5D02G481900 , TraesCS5D02G481900 , TraesCS5A02G469100 , TraesCS5A02G469100
Populus -


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cDNA sequences
Sobic.001G039600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G473600 ZOS5-06 - C2H2 zinc finger protein, expressed -
2 Sobic.007G041300 expressed protein -
3 Sobic.005G079800 transcriptional corepressor SEUSS, putative, expressed -
4 Sobic.003G438900 FYVE zinc finger domain containing protein, expressed -
5 Sobic.007G191700 expressed protein K08507: unconventional SNARE in the endoplasmic reticulum protein 1
6 Sobic.002G309800 casein kinase II subunit beta-4, putative, expressed K03115: casein kinase II subunit beta
7 Sobic.007G002900 C3-BTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with C3 subfamily conserved sequence, expressed K10523: speckle-type POZ protein
8 Sobic.009G000500 pex14, putative, expressed K13343: peroxin-14
9 Sobic.003G266001 - -
10 Sobic.008G152800 Cellular calcium signals(PubMedID : 19860013)@calcineurin B, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
11 Sobic.003G401100 WW domain containing protein, expressed K12865: PQBP1, polyglutamine-binding protein 1
12 Sobic.003G197800 peptidyl-prolyl cis-trans isomerase, putative, expressed K12737: peptidyl-prolyl cis-trans isomerase SDCCAG10
13 Sobic.001G088100 transcriptional adaptor, putative, expressed K11314: TADA2A, transcriptional adapter 2-alpha
14 Sobic.007G102700 - -
15 Sobic.009G065100 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
16 Sobic.003G394300 tetratricopeptide repeat domain containing protein, expressed -
17 Sobic.006G133800 myb-like DNA-binding domain containing protein, expressed -
18 Sobic.001G016000 expressed protein K07759: poly(ADP-ribose) glycohydrolase
19 Sobic.004G021200 expressed protein -
20 Sobic.007G027700 expressed protein -


Gene co-expression network
sample Sobic001G039600 Sobic001G039600 Sobic001G473600 Sobic001G473600 Sobic001G039600--Sobic001G473600 Sobic007G041300 Sobic007G041300 Sobic001G039600--Sobic007G041300 Sobic005G079800 Sobic005G079800 Sobic001G039600--Sobic005G079800 Sobic003G438900 Sobic003G438900 Sobic001G039600--Sobic003G438900 Sobic007G191700 Sobic007G191700 Sobic001G039600--Sobic007G191700 Sobic002G309800 Sobic002G309800 Sobic001G039600--Sobic002G309800 Sobic007G002900 Sobic007G002900 Sobic001G039600--Sobic007G002900 Sobic009G000500 Sobic009G000500 Sobic001G039600--Sobic009G000500 Sobic003G266001 Sobic003G266001 Sobic001G039600--Sobic003G266001 Sobic002G034600 Sobic002G034600 Sobic001G473600--Sobic002G034600 Sobic003G352200 Sobic003G352200 Sobic001G473600--Sobic003G352200 Sobic007G046200 Sobic007G046200 Sobic001G473600--Sobic007G046200 Sobic001G395100 Sobic001G395100 Sobic001G473600--Sobic001G395100 Sobic004G353000 Sobic004G353000 Sobic001G473600--Sobic004G353000 Sobic007G084100 Sobic007G084100 Sobic001G473600--Sobic007G084100 Sobic001G088100 Sobic001G088100 Sobic001G473600--Sobic001G088100 Sobic001G473600--Sobic007G041300 Sobic007G075900 Sobic007G075900 Sobic001G473600--Sobic007G075900 Sobic007G102700 Sobic007G102700 Sobic007G041300--Sobic007G102700 Sobic007G041300--Sobic001G473600 Sobic007G041300--Sobic007G191700 Sobic004G036300 Sobic004G036300 Sobic007G041300--Sobic004G036300 Sobic009G137700 Sobic009G137700 Sobic007G041300--Sobic009G137700 Sobic007G041300--Sobic003G438900 Sobic004G088200 Sobic004G088200 Sobic007G041300--Sobic004G088200 Sobic007G041300--Sobic005G079800 Sobic003G427100 Sobic003G427100 Sobic007G041300--Sobic003G427100 Sobic005G079800--Sobic003G438900 Sobic001G253200 Sobic001G253200 Sobic005G079800--Sobic001G253200 Sobic005G079800--Sobic007G191700 Sobic002G153700 Sobic002G153700 Sobic005G079800--Sobic002G153700 Sobic005G021500 Sobic005G021500 Sobic005G079800--Sobic005G021500 Sobic005G079800--Sobic003G427100 Sobic007G054400 Sobic007G054400 Sobic005G079800--Sobic007G054400 Sobic010G194700 Sobic010G194700 Sobic005G079800--Sobic010G194700 Sobic004G096500 Sobic004G096500 Sobic005G079800--Sobic004G096500 Sobic003G438900--Sobic005G079800 Sobic003G438900--Sobic002G153700 Sobic003G438900--Sobic003G427100 Sobic003G438900--Sobic007G191700 Sobic003G438900--Sobic007G054400 Sobic001G433300 Sobic001G433300 Sobic003G438900--Sobic001G433300 Sobic003G438900--Sobic007G041300 Sobic003G438900--Sobic004G088200 Sobic003G438900--Sobic001G253200 Sobic010G237900 Sobic010G237900 Sobic007G191700--Sobic010G237900 Sobic007G091600 Sobic007G091600 Sobic007G191700--Sobic007G091600 Sobic004G129300 Sobic004G129300 Sobic007G191700--Sobic004G129300 Sobic007G191700--Sobic001G395100 Sobic007G191700--Sobic005G079800 Sobic010G279700 Sobic010G279700 Sobic007G191700--Sobic010G279700 Sobic006G118700 Sobic006G118700 Sobic007G191700--Sobic006G118700 Sobic007G191700--Sobic007G041300 Sobic007G191700--Sobic001G473600 Sobic009G065100 Sobic009G065100 Sobic002G309800--Sobic009G065100 Sobic002G309800--Sobic001G253200 Sobic010G056200 Sobic010G056200 Sobic002G309800--Sobic010G056200 Sobic002G309800--Sobic007G054400 Sobic009G215800 Sobic009G215800 Sobic002G309800--Sobic009G215800 Sobic002G309800--Sobic005G079800 Sobic009G070100 Sobic009G070100 Sobic002G309800--Sobic009G070100 Sobic007G078600 Sobic007G078600 Sobic002G309800--Sobic007G078600 Sobic004G087600 Sobic004G087600 Sobic002G309800--Sobic004G087600 Sobic007G002900--Sobic002G309800 Sobic007G002900--Sobic009G070100 Sobic008G136200 Sobic008G136200 Sobic007G002900--Sobic008G136200 Sobic006G191400 Sobic006G191400 Sobic007G002900--Sobic006G191400 Sobic007G052900 Sobic007G052900 Sobic007G002900--Sobic007G052900 Sobic007G002900--Sobic001G039600 Sobic008G165100 Sobic008G165100 Sobic007G002900--Sobic008G165100 Sobic003G197800 Sobic003G197800 Sobic007G002900--Sobic003G197800 Sobic007G002900--Sobic010G056200 Sobic004G031700 Sobic004G031700 Sobic009G000500--Sobic004G031700 Sobic003G445400 Sobic003G445400 Sobic009G000500--Sobic003G445400 Sobic002G320500 Sobic002G320500 Sobic009G000500--Sobic002G320500 Sobic006G128900 Sobic006G128900 Sobic009G000500--Sobic006G128900 Sobic006G133800 Sobic006G133800 Sobic009G000500--Sobic006G133800 Sobic001G090400 Sobic001G090400 Sobic009G000500--Sobic001G090400 Sobic003G307000 Sobic003G307000 Sobic009G000500--Sobic003G307000 Sobic008G173900 Sobic008G173900 Sobic009G000500--Sobic008G173900 Sobic001G206100 Sobic001G206100 Sobic009G000500--Sobic001G206100 Sobic001G493200 Sobic001G493200 Sobic003G266001--Sobic001G493200 Sobic005G128400 Sobic005G128400 Sobic003G266001--Sobic005G128400 Sobic008G103200 Sobic008G103200 Sobic003G266001--Sobic008G103200 Sobic010G069100 Sobic010G069100 Sobic003G266001--Sobic010G069100 Sobic003G408600 Sobic003G408600 Sobic003G266001--Sobic003G408600 Sobic004G072100 Sobic004G072100 Sobic003G266001--Sobic004G072100 Sobic004G021200 Sobic004G021200 Sobic003G266001--Sobic004G021200 Sobic001G311500 Sobic001G311500 Sobic003G266001--Sobic001G311500 Sobic007G159900 Sobic007G159900 Sobic003G266001--Sobic007G159900
Octagon: transcription factors


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