Gene annotation
Transcriptome id Sobic.008G152800.2
Synonym CBL3, ATCBL3, calcineurin B-like proteins, SbCBL03, Sb08g020190
Functional annotation Cellular calcium signals (PubMedID : 19860013)
calcineurin B, putative, expressed
UniProt C4P7Y6
Pfam PF13499
Panther DB PTHR23056 PTHR23056:SF44
NCBI CDD KOG0034; Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein
KEGG Orthology K06268; PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G26570 : calcineurin B-like 3
RAP-DB (Rice) LOC_Os12g40510.1 : calcineurin B, putative, expressed
MaizeGDB (Corn) Zm00025a025238 , Zm00025a004556
Brachypodium KQJ85981
Barley HORVU4Hr1G090270.16 , HORVU4Hr1G090270.14 , HORVU4Hr1G090270.15 , HORVU4Hr1G090270.12 , HORVU4Hr1G090270.13 , HORVU4Hr1G090270.10 , HORVU4Hr1G090270.11 , HORVU5Hr1G016320.1 , HORVU5Hr1G016320.3 , HORVU5Hr1G016320.2 , HORVU5Hr1G016320.4 , HORVU4Hr1G011670.9 , HORVU4Hr1G011670.8 , HORVU4Hr1G011670.2 , HORVU4Hr1G011670.1 , HORVU4Hr1G011670.7 , HORVU4Hr1G011670.5 , HORVU4Hr1G090270.1
Wheat TraesCS5B02G071500 , TraesCS5D02G072100
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.008G152800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G178600 metal ion binding protein, putative, expressed -
2 Sobic.001G039600 U-box domain-containing protein, putative, expressed -
3 Sobic.006G133800 myb-like DNA-binding domain containing protein, expressed -
4 Sobic.009G000500 pex14, putative, expressed K13343: peroxin-14
5 Sobic.001G473600 ZOS5-06 - C2H2 zinc finger protein, expressed -
6 Sobic.002G277600 XAP5 family protein, putative, expressed K13119: FAM50, protein FAM50
7 Sobic.008G124700 splicing factor, arginine/serine-rich 18, putative, expressed -
8 Sobic.007G046200 ELF7, putative, expressed K15174: RNA polymerase II-associated factor 1
9 Sobic.001G107500 cyclin-dependent kinase, putative, expressed K08819: cyclin-dependent kinase 12/13
10 Sobic.001G016000 expressed protein K07759: poly(ADP-ribose) glycohydrolase
11 Sobic.007G128500 expressed protein -
12 Sobic.005G207500 AAA-type ATPase family protein, putative, expressed -
13 Sobic.010G194700 ARID/BRIGHT DNA-binding domain-containing protein, putative, expressed -
14 Sobic.003G119000 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
15 Sobic.002G067800 - -
16 Sobic.001G026200 heat shock protein DnaJ, putative, expressed K09534: DnaJ homolog subfamily C member 14
17 Sobic.007G002900 C3-BTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with C3 subfamily conserved sequence, expressed K10523: speckle-type POZ protein
18 Sobic.001G124000 pinin/SDK/memA protein, putative, expressed K13114: pinin
19 Sobic.007G115200 hydrolase, NUDIX family, domain containing protein, expressed -
20 Sobic.002G320500 MYB family transcription factor, putative, expressed -


Gene co-expression network
sample Sobic008G152800 Sobic008G152800 Sobic001G178600 Sobic001G178600 Sobic008G152800--Sobic001G178600 Sobic001G039600 Sobic001G039600 Sobic008G152800--Sobic001G039600 Sobic006G133800 Sobic006G133800 Sobic008G152800--Sobic006G133800 Sobic009G000500 Sobic009G000500 Sobic008G152800--Sobic009G000500 Sobic001G473600 Sobic001G473600 Sobic008G152800--Sobic001G473600 Sobic002G277600 Sobic002G277600 Sobic008G152800--Sobic002G277600 Sobic008G124700 Sobic008G124700 Sobic008G152800--Sobic008G124700 Sobic007G046200 Sobic007G046200 Sobic008G152800--Sobic007G046200 Sobic001G107500 Sobic001G107500 Sobic008G152800--Sobic001G107500 Sobic005G207500 Sobic005G207500 Sobic001G178600--Sobic005G207500 Sobic002G153700 Sobic002G153700 Sobic001G178600--Sobic002G153700 Sobic010G069100 Sobic010G069100 Sobic001G178600--Sobic010G069100 Sobic007G146900 Sobic007G146900 Sobic001G178600--Sobic007G146900 Sobic002G353600 Sobic002G353600 Sobic001G178600--Sobic002G353600 Sobic001G026200 Sobic001G026200 Sobic001G178600--Sobic001G026200 Sobic001G088100 Sobic001G088100 Sobic001G178600--Sobic001G088100 Sobic007G159900 Sobic007G159900 Sobic001G178600--Sobic007G159900 Sobic008G113100 Sobic008G113100 Sobic001G178600--Sobic008G113100 Sobic001G039600--Sobic001G473600 Sobic007G041300 Sobic007G041300 Sobic001G039600--Sobic007G041300 Sobic005G079800 Sobic005G079800 Sobic001G039600--Sobic005G079800 Sobic003G438900 Sobic003G438900 Sobic001G039600--Sobic003G438900 Sobic007G191700 Sobic007G191700 Sobic001G039600--Sobic007G191700 Sobic002G309800 Sobic002G309800 Sobic001G039600--Sobic002G309800 Sobic007G002900 Sobic007G002900 Sobic001G039600--Sobic007G002900 Sobic001G039600--Sobic009G000500 Sobic003G266001 Sobic003G266001 Sobic001G039600--Sobic003G266001 Sobic002G320500 Sobic002G320500 Sobic006G133800--Sobic002G320500 Sobic002G157000 Sobic002G157000 Sobic006G133800--Sobic002G157000 Sobic006G133800--Sobic009G000500 Sobic006G133800--Sobic001G107500 Sobic002G248400 Sobic002G248400 Sobic006G133800--Sobic002G248400 Sobic003G197800 Sobic003G197800 Sobic006G133800--Sobic003G197800 Sobic008G173900 Sobic008G173900 Sobic006G133800--Sobic008G173900 Sobic009G210500 Sobic009G210500 Sobic006G133800--Sobic009G210500 Sobic009G065100 Sobic009G065100 Sobic006G133800--Sobic009G065100 Sobic004G031700 Sobic004G031700 Sobic009G000500--Sobic004G031700 Sobic003G445400 Sobic003G445400 Sobic009G000500--Sobic003G445400 Sobic009G000500--Sobic002G320500 Sobic006G128900 Sobic006G128900 Sobic009G000500--Sobic006G128900 Sobic009G000500--Sobic006G133800 Sobic001G090400 Sobic001G090400 Sobic009G000500--Sobic001G090400 Sobic003G307000 Sobic003G307000 Sobic009G000500--Sobic003G307000 Sobic009G000500--Sobic008G173900 Sobic001G206100 Sobic001G206100 Sobic009G000500--Sobic001G206100 Sobic002G034600 Sobic002G034600 Sobic001G473600--Sobic002G034600 Sobic003G352200 Sobic003G352200 Sobic001G473600--Sobic003G352200 Sobic001G473600--Sobic007G046200 Sobic001G395100 Sobic001G395100 Sobic001G473600--Sobic001G395100 Sobic004G353000 Sobic004G353000 Sobic001G473600--Sobic004G353000 Sobic007G084100 Sobic007G084100 Sobic001G473600--Sobic007G084100 Sobic001G473600--Sobic001G088100 Sobic001G473600--Sobic007G041300 Sobic007G075900 Sobic007G075900 Sobic001G473600--Sobic007G075900 Sobic001G124000 Sobic001G124000 Sobic002G277600--Sobic001G124000 Sobic004G237100 Sobic004G237100 Sobic002G277600--Sobic004G237100 Sobic001G375300 Sobic001G375300 Sobic002G277600--Sobic001G375300 Sobic003G160000 Sobic003G160000 Sobic002G277600--Sobic003G160000 Sobic001G107900 Sobic001G107900 Sobic002G277600--Sobic001G107900 Sobic009G178800 Sobic009G178800 Sobic002G277600--Sobic009G178800 Sobic004G065100 Sobic004G065100 Sobic002G277600--Sobic004G065100 Sobic002G277600--Sobic008G124700 Sobic002G277600--Sobic001G090400 Sobic010G101800 Sobic010G101800 Sobic008G124700--Sobic010G101800 Sobic008G124700--Sobic001G124000 Sobic007G167500 Sobic007G167500 Sobic008G124700--Sobic007G167500 Sobic008G124700--Sobic001G107500 Sobic006G200600 Sobic006G200600 Sobic008G124700--Sobic006G200600 Sobic003G184699 Sobic003G184699 Sobic008G124700--Sobic003G184699 Sobic001G016000 Sobic001G016000 Sobic008G124700--Sobic001G016000 Sobic008G124700--Sobic006G133800 Sobic008G124700--Sobic009G210500 Sobic001G517500 Sobic001G517500 Sobic007G046200--Sobic001G517500 Sobic007G046200--Sobic001G473600 Sobic007G046200--Sobic002G034600 Sobic007G119200 Sobic007G119200 Sobic007G046200--Sobic007G119200 Sobic007G111100 Sobic007G111100 Sobic007G046200--Sobic007G111100 Sobic003G355000 Sobic003G355000 Sobic007G046200--Sobic003G355000 Sobic010G202600 Sobic010G202600 Sobic007G046200--Sobic010G202600 Sobic001G109800 Sobic001G109800 Sobic007G046200--Sobic001G109800 Sobic003G081000 Sobic003G081000 Sobic007G046200--Sobic003G081000 Sobic001G107500--Sobic002G320500 Sobic001G107500--Sobic006G133800 Sobic001G107500--Sobic002G157000 Sobic001G107500--Sobic009G065100 Sobic001G107500--Sobic001G090400 Sobic010G056200 Sobic010G056200 Sobic001G107500--Sobic010G056200 Sobic001G497300 Sobic001G497300 Sobic001G107500--Sobic001G497300 Sobic007G104800 Sobic007G104800 Sobic001G107500--Sobic007G104800 Sobic004G205600 Sobic004G205600 Sobic001G107500--Sobic004G205600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.