Gene annotation
Transcriptome id Sobic.008G124700.1,Sobic.008G124700.2
Synonym Sb08g017690
Functional annotation splicing factor, arginine/serine-rich 18, putative, expressed
UniProt C5YPL5 , A0A1Z5R7E8
Pfam -
Panther DB PTHR35760 PTHR35760:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G27860 : -
RAP-DB (Rice) LOC_Os12g36740.1 : splicing factor, arginine/serine-rich 18, putative, expressed
MaizeGDB (Corn) Zm00025a054316
Brachypodium PNT62565
Barley HORVU5Hr1G023980.1 , HORVU5Hr1G023980.3 , HORVU5Hr1G023980.2 , HORVU5Hr1G023980.5 , HORVU5Hr1G023980.4 , HORVU5Hr1G023980.7 , HORVU5Hr1G023980.6
Wheat TraesCS5A02G091500 , TraesCS5D02G103600 , TraesCS5D02G103600 , TraesCS5B02G098000
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.008G124700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G101800 dynamin, putative, expressed K01528: dynamin 1/3
2 Sobic.001G124000 pinin/SDK/memA protein, putative, expressed K13114: pinin
3 Sobic.007G167500 expressed protein -
4 Sobic.001G107500 cyclin-dependent kinase, putative, expressed K08819: cyclin-dependent kinase 12/13
5 Sobic.006G200600 expressed protein -
6 Sobic.003G184699 - -
7 Sobic.001G016000 expressed protein K07759: poly(ADP-ribose) glycohydrolase
8 Sobic.006G133800 myb-like DNA-binding domain containing protein, expressed -
9 Sobic.009G210500 expressed protein -
10 Sobic.002G277600 XAP5 family protein, putative, expressed K13119: FAM50, protein FAM50
11 Sobic.004G065100 RNA recognition motif, putative, expressed K12842: U2-associated protein SR140
12 Sobic.008G103200 OsPOP1 - Putative Prolyl Oligopeptidase homologue, expressed K01322: prolyl oligopeptidase
13 Sobic.003G397800 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
14 Sobic.002G248400 ENT domain containing protein, expressed -
15 Sobic.001G090400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4
16 Sobic.004G353200 proteasome subunit, putative, expressed K03035: PSMD12, 26S proteasome regulatory subunit N5
17 Sobic.003G119000 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
18 Sobic.004G274200 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
19 Sobic.007G009400 bromodomain domain containing protein, expressed -
20 Sobic.007G026300 pre-mRNA-splicing factor SLU7, putative, expressed K12819: pre-mRNA-processing factor SLU7


Gene co-expression network
sample Sobic008G124700 Sobic008G124700 Sobic010G101800 Sobic010G101800 Sobic008G124700--Sobic010G101800 Sobic001G124000 Sobic001G124000 Sobic008G124700--Sobic001G124000 Sobic007G167500 Sobic007G167500 Sobic008G124700--Sobic007G167500 Sobic001G107500 Sobic001G107500 Sobic008G124700--Sobic001G107500 Sobic006G200600 Sobic006G200600 Sobic008G124700--Sobic006G200600 Sobic003G184699 Sobic003G184699 Sobic008G124700--Sobic003G184699 Sobic001G016000 Sobic001G016000 Sobic008G124700--Sobic001G016000 Sobic006G133800 Sobic006G133800 Sobic008G124700--Sobic006G133800 Sobic009G210500 Sobic009G210500 Sobic008G124700--Sobic009G210500 Sobic002G297200 Sobic002G297200 Sobic010G101800--Sobic002G297200 Sobic001G155000 Sobic001G155000 Sobic010G101800--Sobic001G155000 Sobic010G101800--Sobic007G167500 Sobic010G028800 Sobic010G028800 Sobic010G101800--Sobic010G028800 Sobic003G397800 Sobic003G397800 Sobic010G101800--Sobic003G397800 Sobic001G409600 Sobic001G409600 Sobic010G101800--Sobic001G409600 Sobic002G310200 Sobic002G310200 Sobic010G101800--Sobic002G310200 Sobic010G053800 Sobic010G053800 Sobic010G101800--Sobic010G053800 Sobic002G309600 Sobic002G309600 Sobic010G101800--Sobic002G309600 Sobic009G024400 Sobic009G024400 Sobic001G124000--Sobic009G024400 Sobic004G039200 Sobic004G039200 Sobic001G124000--Sobic004G039200 Sobic008G113100 Sobic008G113100 Sobic001G124000--Sobic008G113100 Sobic004G208900 Sobic004G208900 Sobic001G124000--Sobic004G208900 Sobic001G227200 Sobic001G227200 Sobic001G124000--Sobic001G227200 Sobic007G117400 Sobic007G117400 Sobic001G124000--Sobic007G117400 Sobic009G065100 Sobic009G065100 Sobic001G124000--Sobic009G065100 Sobic010G277500 Sobic010G277500 Sobic001G124000--Sobic010G277500 Sobic008G011100 Sobic008G011100 Sobic001G124000--Sobic008G011100 Sobic003G119000 Sobic003G119000 Sobic007G167500--Sobic003G119000 Sobic002G006900 Sobic002G006900 Sobic007G167500--Sobic002G006900 Sobic007G167500--Sobic003G397800 Sobic007G096600 Sobic007G096600 Sobic007G167500--Sobic007G096600 Sobic007G167500--Sobic010G101800 Sobic007G065400 Sobic007G065400 Sobic007G167500--Sobic007G065400 Sobic007G167500--Sobic009G210500 Sobic003G332800 Sobic003G332800 Sobic007G167500--Sobic003G332800 Sobic003G372700 Sobic003G372700 Sobic007G167500--Sobic003G372700 Sobic002G320500 Sobic002G320500 Sobic001G107500--Sobic002G320500 Sobic001G107500--Sobic006G133800 Sobic002G157000 Sobic002G157000 Sobic001G107500--Sobic002G157000 Sobic001G107500--Sobic009G065100 Sobic001G090400 Sobic001G090400 Sobic001G107500--Sobic001G090400 Sobic010G056200 Sobic010G056200 Sobic001G107500--Sobic010G056200 Sobic001G497300 Sobic001G497300 Sobic001G107500--Sobic001G497300 Sobic007G104800 Sobic007G104800 Sobic001G107500--Sobic007G104800 Sobic004G205600 Sobic004G205600 Sobic001G107500--Sobic004G205600 Sobic004G353200 Sobic004G353200 Sobic006G200600--Sobic004G353200 Sobic001G281600 Sobic001G281600 Sobic006G200600--Sobic001G281600 Sobic004G121100 Sobic004G121100 Sobic006G200600--Sobic004G121100 Sobic001G392300 Sobic001G392300 Sobic006G200600--Sobic001G392300 Sobic010G251000 Sobic010G251000 Sobic006G200600--Sobic010G251000 Sobic008G047800 Sobic008G047800 Sobic006G200600--Sobic008G047800 Sobic009G205200 Sobic009G205200 Sobic006G200600--Sobic009G205200 Sobic007G078600 Sobic007G078600 Sobic006G200600--Sobic007G078600 Sobic003G248200 Sobic003G248200 Sobic006G200600--Sobic003G248200 Sobic008G162900 Sobic008G162900 Sobic003G184699--Sobic008G162900 Sobic003G184699--Sobic008G047800 Sobic005G027400 Sobic005G027400 Sobic003G184699--Sobic005G027400 Sobic009G126400 Sobic009G126400 Sobic003G184699--Sobic009G126400 Sobic003G184699--Sobic010G101800 Sobic003G184699--Sobic007G167500 Sobic003G443100 Sobic003G443100 Sobic003G184699--Sobic003G443100 Sobic001G083400 Sobic001G083400 Sobic003G184699--Sobic001G083400 Sobic003G184699--Sobic002G309600 Sobic002G034600 Sobic002G034600 Sobic001G016000--Sobic002G034600 Sobic010G236400 Sobic010G236400 Sobic001G016000--Sobic010G236400 Sobic001G016000--Sobic003G397800 Sobic001G016000--Sobic001G409600 Sobic001G016000--Sobic004G205600 Sobic004G274200 Sobic004G274200 Sobic001G016000--Sobic004G274200 Sobic002G283600 Sobic002G283600 Sobic001G016000--Sobic002G283600 Sobic007G119200 Sobic007G119200 Sobic001G016000--Sobic007G119200 Sobic006G173100 Sobic006G173100 Sobic001G016000--Sobic006G173100 Sobic006G133800--Sobic002G320500 Sobic006G133800--Sobic002G157000 Sobic009G000500 Sobic009G000500 Sobic006G133800--Sobic009G000500 Sobic006G133800--Sobic001G107500 Sobic002G248400 Sobic002G248400 Sobic006G133800--Sobic002G248400 Sobic003G197800 Sobic003G197800 Sobic006G133800--Sobic003G197800 Sobic008G173900 Sobic008G173900 Sobic006G133800--Sobic008G173900 Sobic006G133800--Sobic009G210500 Sobic006G133800--Sobic009G065100 Sobic009G210500--Sobic002G320500 Sobic009G210500--Sobic007G065400 Sobic009G210500--Sobic002G157000 Sobic006G032400 Sobic006G032400 Sobic009G210500--Sobic006G032400 Sobic003G268300 Sobic003G268300 Sobic009G210500--Sobic003G268300 Sobic001G407200 Sobic001G407200 Sobic009G210500--Sobic001G407200 Sobic009G210500--Sobic007G167500 Sobic009G210500--Sobic001G090400 Sobic004G145500 Sobic004G145500 Sobic009G210500--Sobic004G145500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.