Gene annotation
Transcriptome id Sobic.001G178600.2
Synonym Sb01g015540
Functional annotation metal ion binding protein, putative, expressed
UniProt A0A1Z5S6R1
Pfam PF14566
Panther DB PTHR23339 PTHR23339:SF54
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G62010 : -
RAP-DB (Rice) LOC_Os03g38970.1 : metal ion binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a007131
Brachypodium KQK14315
Barley HORVU4Hr1G043120.16 , HORVU4Hr1G043120.17 , HORVU4Hr1G043120.14 , HORVU4Hr1G043120.15 , HORVU4Hr1G043120.12 , HORVU4Hr1G043120.13 , HORVU4Hr1G043120.10 , HORVU4Hr1G043120.11 , HORVU4Hr1G043120.18 , HORVU4Hr1G043120.19 , HORVU4Hr1G043120.4 , HORVU4Hr1G043120.5 , HORVU4Hr1G043120.6 , HORVU4Hr1G043120.7 , HORVU4Hr1G043120.1 , HORVU4Hr1G043120.2 , HORVU4Hr1G043120.3 , HORVU4Hr1G043120.8 , HORVU4Hr1G043120.9 , HORVU4Hr1G043120.20
Wheat TraesCS4A02G143300 , TraesCS4A02G143300 , TraesCS4D02G166300 , TraesCS4D02G166300 , TraesCS4D02G166300 , TraesCS4D02G166300 , TraesCS4B02G156100 , TraesCS4B02G156100
Populus -


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cDNA sequences
Sobic.001G178600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G207500 AAA-type ATPase family protein, putative, expressed -
2 Sobic.002G153700 SWP, putative, expressed K15156: MED14, mediator of RNA polymerase II transcription subunit 14
3 Sobic.010G069100 expressed protein -
4 Sobic.007G146900 ARID/BRIGHT DNA-binding domain containing protein, expressed -
5 Sobic.002G353600 expressed protein -
6 Sobic.001G026200 heat shock protein DnaJ, putative, expressed K09534: DnaJ homolog subfamily C member 14
7 Sobic.001G088100 transcriptional adaptor, putative, expressed K11314: TADA2A, transcriptional adapter 2-alpha
8 Sobic.007G159900 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
9 Sobic.008G113100 protein binding protein, putative, expressed -
10 Sobic.002G264200 RNA recognition motif containing protein, expressed -
11 Sobic.004G146500 ataxin-2 related protein, putative, expressed -
12 Sobic.004G158400 AML1, putative, expressed -
13 Sobic.007G065400 expressed protein K14400: pre-mRNA cleavage complex 2 protein Pcf11
14 Sobic.001G473600 ZOS5-06 - C2H2 zinc finger protein, expressed -
15 Sobic.009G056500 zinc finger, C3HC4 type domain containing protein, expressed -
16 Sobic.001G356500 polypyrimidine tract-binding protein, putative, expressed K14948: PTBP2, polypyrimidine tract-binding protein 2
17 Sobic.001G517500 Ubiquitin family domain containing protein, expressed K04523: UBQLN, ubiquilin
18 Sobic.003G059750 - K11797: PHIP, PH-interacting protein
19 Sobic.004G271000 expressed protein -
20 Sobic.001G154900 "GL3.1/qGL3(Ortholog in rice:Qi et al., 2012, Zhang et al., 2012)"(PubMedID : 31659834)@serine/threonine protein phosphatase, putative, expressed -


Gene co-expression network
sample Sobic001G178600 Sobic001G178600 Sobic005G207500 Sobic005G207500 Sobic001G178600--Sobic005G207500 Sobic002G153700 Sobic002G153700 Sobic001G178600--Sobic002G153700 Sobic010G069100 Sobic010G069100 Sobic001G178600--Sobic010G069100 Sobic007G146900 Sobic007G146900 Sobic001G178600--Sobic007G146900 Sobic002G353600 Sobic002G353600 Sobic001G178600--Sobic002G353600 Sobic001G026200 Sobic001G026200 Sobic001G178600--Sobic001G026200 Sobic001G088100 Sobic001G088100 Sobic001G178600--Sobic001G088100 Sobic007G159900 Sobic007G159900 Sobic001G178600--Sobic007G159900 Sobic008G113100 Sobic008G113100 Sobic001G178600--Sobic008G113100 Sobic003G059750 Sobic003G059750 Sobic005G207500--Sobic003G059750 Sobic005G207500--Sobic002G153700 Sobic007G103600 Sobic007G103600 Sobic005G207500--Sobic007G103600 Sobic003G119000 Sobic003G119000 Sobic005G207500--Sobic003G119000 Sobic008G009700 Sobic008G009700 Sobic005G207500--Sobic008G009700 Sobic005G207500--Sobic002G353600 Sobic005G207500--Sobic010G069100 Sobic002G071500 Sobic002G071500 Sobic005G207500--Sobic002G071500 Sobic005G207500--Sobic001G026200 Sobic002G153700--Sobic002G071500 Sobic002G153700--Sobic005G207500 Sobic002G153700--Sobic008G009700 Sobic010G065300 Sobic010G065300 Sobic002G153700--Sobic010G065300 Sobic009G119000 Sobic009G119000 Sobic002G153700--Sobic009G119000 Sobic003G307000 Sobic003G307000 Sobic002G153700--Sobic003G307000 Sobic002G264200 Sobic002G264200 Sobic002G153700--Sobic002G264200 Sobic002G153700--Sobic010G069100 Sobic001G306900 Sobic001G306900 Sobic002G153700--Sobic001G306900 Sobic010G069100--Sobic002G071500 Sobic010G069100--Sobic002G264200 Sobic005G112300 Sobic005G112300 Sobic010G069100--Sobic005G112300 Sobic008G047800 Sobic008G047800 Sobic010G069100--Sobic008G047800 Sobic010G069100--Sobic008G009700 Sobic001G154900 Sobic001G154900 Sobic010G069100--Sobic001G154900 Sobic004G146500 Sobic004G146500 Sobic010G069100--Sobic004G146500 Sobic007G065400 Sobic007G065400 Sobic010G069100--Sobic007G065400 Sobic009G005500 Sobic009G005500 Sobic010G069100--Sobic009G005500 Sobic007G146900--Sobic002G353600 Sobic007G146900--Sobic002G153700 Sobic007G146900--Sobic002G264200 Sobic007G146900--Sobic005G207500 Sobic007G026000 Sobic007G026000 Sobic007G146900--Sobic007G026000 Sobic007G146900--Sobic009G119000 Sobic007G119200 Sobic007G119200 Sobic007G146900--Sobic007G119200 Sobic008G054500 Sobic008G054500 Sobic007G146900--Sobic008G054500 Sobic003G397800 Sobic003G397800 Sobic007G146900--Sobic003G397800 Sobic002G353600--Sobic003G397800 Sobic002G353600--Sobic007G146900 Sobic002G297200 Sobic002G297200 Sobic002G353600--Sobic002G297200 Sobic002G353600--Sobic005G207500 Sobic002G353600--Sobic002G264200 Sobic002G353600--Sobic003G059750 Sobic001G206100 Sobic001G206100 Sobic002G353600--Sobic001G206100 Sobic004G257400 Sobic004G257400 Sobic002G353600--Sobic004G257400 Sobic003G445400 Sobic003G445400 Sobic002G353600--Sobic003G445400 Sobic001G026200--Sobic002G071500 Sobic010G116600 Sobic010G116600 Sobic001G026200--Sobic010G116600 Sobic001G026200--Sobic002G153700 Sobic010G236400 Sobic010G236400 Sobic001G026200--Sobic010G236400 Sobic003G360400 Sobic003G360400 Sobic001G026200--Sobic003G360400 Sobic001G026200--Sobic009G119000 Sobic001G398800 Sobic001G398800 Sobic001G026200--Sobic001G398800 Sobic001G026200--Sobic003G119000 Sobic009G044800 Sobic009G044800 Sobic001G026200--Sobic009G044800 Sobic001G088100--Sobic009G005500 Sobic001G088100--Sobic007G119200 Sobic001G088100--Sobic010G069100 Sobic001G088100--Sobic010G236400 Sobic003G394300 Sobic003G394300 Sobic001G088100--Sobic003G394300 Sobic007G105100 Sobic007G105100 Sobic001G088100--Sobic007G105100 Sobic001G241200 Sobic001G241200 Sobic001G088100--Sobic001G241200 Sobic004G274200 Sobic004G274200 Sobic001G088100--Sobic004G274200 Sobic003G408600 Sobic003G408600 Sobic001G088100--Sobic003G408600 Sobic007G159900--Sobic003G360400 Sobic004G158400 Sobic004G158400 Sobic007G159900--Sobic004G158400 Sobic002G366400 Sobic002G366400 Sobic007G159900--Sobic002G366400 Sobic010G112100 Sobic010G112100 Sobic007G159900--Sobic010G112100 Sobic007G183900 Sobic007G183900 Sobic007G159900--Sobic007G183900 Sobic005G064000 Sobic005G064000 Sobic007G159900--Sobic005G064000 Sobic005G100700 Sobic005G100700 Sobic007G159900--Sobic005G100700 Sobic003G188400 Sobic003G188400 Sobic007G159900--Sobic003G188400 Sobic007G159900--Sobic008G113100 Sobic004G258700 Sobic004G258700 Sobic008G113100--Sobic004G258700 Sobic008G028700 Sobic008G028700 Sobic008G113100--Sobic008G028700 Sobic008G113100--Sobic005G064000 Sobic008G113100--Sobic007G065400 Sobic001G456900 Sobic001G456900 Sobic008G113100--Sobic001G456900 Sobic009G024000 Sobic009G024000 Sobic008G113100--Sobic009G024000 Sobic009G040600 Sobic009G040600 Sobic008G113100--Sobic009G040600 Sobic004G208900 Sobic004G208900 Sobic008G113100--Sobic004G208900 Sobic004G039200 Sobic004G039200 Sobic008G113100--Sobic004G039200
Octagon: transcription factors


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