Gene annotation
Transcriptome id Sobic.004G298300.2,Sobic.004G298300.1
Synonym Sb04g033230
Functional annotation ELMO/CED-12 family protein, putative, expressed
UniProt C5XS14 , A0A194YS87
Pfam PF04727
Panther DB PTHR12771 PTHR12771:SF20
NCBI CDD KOG2998; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G44770 : ELMO/CED-12 family protein
RAP-DB (Rice) LOC_Os02g43590.1 : ELMO/CED-12 family protein, putative, expressed
MaizeGDB (Corn) Zm00025a020914
Brachypodium KQK00571 , KQK00572 , KQJ83897
Barley HORVU6Hr1G061980.10 , HORVU6Hr1G061980.8 , HORVU6Hr1G061980.9 , HORVU6Hr1G061980.4 , HORVU6Hr1G061980.5 , HORVU6Hr1G061980.6 , HORVU6Hr1G061980.7 , HORVU6Hr1G061980.1 , HORVU6Hr1G061980.2 , HORVU6Hr1G061980.3
Wheat TraesCS6B02G282400 , TraesCS6D02G224000 , TraesCS6D02G224000 , TraesCS6A02G242100 , TraesCS6A02G242100
Populus -


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cDNA sequences
Sobic.004G298300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G085500 NLI interacting factor-like phosphatase, putative, expressed -
2 Sobic.001G478300 modifier of rudimentary protein, expressed K12185: ESCRT-I complex subunit VPS37
3 Sobic.001G427800 tyrosine protein kinase domain containing protein, putative, expressed -
4 Sobic.003G273100 vesicle transport v-SNARE protein, putative, expressed K08493: vesicle transport through interaction with t-SNAREs 1
5 Sobic.001G028400 domain of unknown function domain containing protein, expressed -
6 Sobic.001G467000 ADP-ribosylation factor, putative, expressed K07955: ADP-ribosylation factor-like protein 8
7 Sobic.001G149700 vesicle transport v-SNARE protein, putative, expressed K08496: GOSR2, golgi SNAP receptor complex member 2
8 Sobic.010G211300 protein phosphatase 2C, putative, expressed K17499: PPM1G, protein phosphatase 1G
9 Sobic.001G056700 "O2(rtholog in meize:Hartings et al., 1989)"(PubMedID : 31659831)@bZIP transcription factor domain containing protein, expressed -
10 Sobic.004G203100 SNF7 domain containing protein, putative, expressed K12195: CHMP6, charged multivesicular body protein 6
11 Sobic.003G007500 CK1_CaseinKinase_1.1 - CK1 includes the casein kinase 1 kinases, expressed -
12 Sobic.009G154800 syntaxin 6, N-terminal domain containing protein, expressed -
13 Sobic.010G071200 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@ubiquitin-conjugating enzyme, putative, expressed K04554: UBE2J2, NCUBE2, ubiquitin-conjugating enzyme E2 J2
14 Sobic.005G000800 FGFR1 oncogene partner, putative, expressed K16546: FGFR1 oncogene partner
15 Sobic.006G257900 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
16 Sobic.004G350100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
17 Sobic.003G137400 OsRCI2-6 - Hydrophobic protein LTI6B, expressed -
18 Sobic.007G063200 tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed K08066: NFYC, nuclear transcription factor Y, gamma
19 Sobic.001G522900 expressed protein -
20 Sobic.010G058900 BSD domain containing protein, expressed -


Gene co-expression network
sample Sobic004G298300 Sobic004G298300 Sobic001G085500 Sobic001G085500 Sobic004G298300--Sobic001G085500 Sobic001G478300 Sobic001G478300 Sobic004G298300--Sobic001G478300 Sobic001G427800 Sobic001G427800 Sobic004G298300--Sobic001G427800 Sobic003G273100 Sobic003G273100 Sobic004G298300--Sobic003G273100 Sobic001G028400 Sobic001G028400 Sobic004G298300--Sobic001G028400 Sobic001G467000 Sobic001G467000 Sobic004G298300--Sobic001G467000 Sobic001G149700 Sobic001G149700 Sobic004G298300--Sobic001G149700 Sobic010G211300 Sobic010G211300 Sobic004G298300--Sobic010G211300 Sobic001G056700 Sobic001G056700 Sobic004G298300--Sobic001G056700 Sobic002G378200 Sobic002G378200 Sobic001G085500--Sobic002G378200 Sobic004G007300 Sobic004G007300 Sobic001G085500--Sobic004G007300 Sobic006G092800 Sobic006G092800 Sobic001G085500--Sobic006G092800 Sobic001G085500--Sobic004G298300 Sobic009G032300 Sobic009G032300 Sobic001G085500--Sobic009G032300 Sobic001G127500 Sobic001G127500 Sobic001G085500--Sobic001G127500 Sobic008G165000 Sobic008G165000 Sobic001G085500--Sobic008G165000 Sobic001G085500--Sobic001G028400 Sobic004G034400 Sobic004G034400 Sobic001G085500--Sobic004G034400 Sobic004G231400 Sobic004G231400 Sobic001G478300--Sobic004G231400 Sobic010G071200 Sobic010G071200 Sobic001G478300--Sobic010G071200 Sobic006G209500 Sobic006G209500 Sobic001G478300--Sobic006G209500 Sobic001G478300--Sobic001G427800 Sobic001G478300--Sobic001G149700 Sobic010G055500 Sobic010G055500 Sobic001G478300--Sobic010G055500 Sobic004G263900 Sobic004G263900 Sobic001G478300--Sobic004G263900 Sobic001G478300--Sobic003G273100 Sobic004G274700 Sobic004G274700 Sobic001G478300--Sobic004G274700 Sobic001G427800--Sobic001G478300 Sobic001G427800--Sobic001G149700 Sobic001G427800--Sobic010G071200 Sobic001G427800--Sobic003G273100 Sobic001G371300 Sobic001G371300 Sobic001G427800--Sobic001G371300 Sobic002G291300 Sobic002G291300 Sobic001G427800--Sobic002G291300 Sobic003G093900 Sobic003G093900 Sobic001G427800--Sobic003G093900 Sobic008G142700 Sobic008G142700 Sobic001G427800--Sobic008G142700 Sobic003G350600 Sobic003G350600 Sobic001G427800--Sobic003G350600 Sobic003G273100--Sobic001G371300 Sobic003G273100--Sobic001G149700 Sobic003G273100--Sobic001G478300 Sobic003G273100--Sobic004G274700 Sobic003G273100--Sobic002G291300 Sobic003G273100--Sobic001G427800 Sobic003G273100--Sobic004G231400 Sobic007G126200 Sobic007G126200 Sobic003G273100--Sobic007G126200 Sobic004G079100 Sobic004G079100 Sobic003G273100--Sobic004G079100 Sobic010G033400 Sobic010G033400 Sobic001G028400--Sobic010G033400 Sobic007G063200 Sobic007G063200 Sobic001G028400--Sobic007G063200 Sobic001G056200 Sobic001G056200 Sobic001G028400--Sobic001G056200 Sobic001G028400--Sobic004G263900 Sobic003G359300 Sobic003G359300 Sobic001G028400--Sobic003G359300 Sobic007G205000 Sobic007G205000 Sobic001G028400--Sobic007G205000 Sobic003G437500 Sobic003G437500 Sobic001G028400--Sobic003G437500 Sobic007G118200 Sobic007G118200 Sobic001G028400--Sobic007G118200 Sobic001G028400--Sobic010G211300 Sobic001G372000 Sobic001G372000 Sobic001G467000--Sobic001G372000 Sobic003G045400 Sobic003G045400 Sobic001G467000--Sobic003G045400 Sobic004G150400 Sobic004G150400 Sobic001G467000--Sobic004G150400 Sobic001G512600 Sobic001G512600 Sobic001G467000--Sobic001G512600 Sobic001G464100 Sobic001G464100 Sobic001G467000--Sobic001G464100 Sobic002G313500 Sobic002G313500 Sobic001G467000--Sobic002G313500 Sobic001G467000--Sobic001G028400 Sobic001G467000--Sobic010G211300 Sobic001G291100 Sobic001G291100 Sobic001G467000--Sobic001G291100 Sobic001G149700--Sobic010G071200 Sobic001G149700--Sobic010G055500 Sobic001G149700--Sobic004G231400 Sobic001G149700--Sobic001G478300 Sobic006G257900 Sobic006G257900 Sobic001G149700--Sobic006G257900 Sobic001G149700--Sobic008G142700 Sobic001G149700--Sobic003G273100 Sobic001G076000 Sobic001G076000 Sobic001G149700--Sobic001G076000 Sobic001G512900 Sobic001G512900 Sobic001G149700--Sobic001G512900 Sobic010G211300--Sobic001G028400 Sobic004G013600 Sobic004G013600 Sobic010G211300--Sobic004G013600 Sobic006G267300 Sobic006G267300 Sobic010G211300--Sobic006G267300 Sobic010G211300--Sobic001G056200 Sobic001G083600 Sobic001G083600 Sobic010G211300--Sobic001G083600 Sobic010G211300--Sobic010G033400 Sobic002G084300 Sobic002G084300 Sobic010G211300--Sobic002G084300 Sobic010G211300--Sobic003G437500 Sobic005G000800 Sobic005G000800 Sobic010G211300--Sobic005G000800 Sobic001G471900 Sobic001G471900 Sobic001G056700--Sobic001G471900 Sobic001G056700--Sobic002G291300 Sobic010G228600 Sobic010G228600 Sobic001G056700--Sobic010G228600 Sobic010G144400 Sobic010G144400 Sobic001G056700--Sobic010G144400 Sobic004G164500 Sobic004G164500 Sobic001G056700--Sobic004G164500 Sobic001G082400 Sobic001G082400 Sobic001G056700--Sobic001G082400 Sobic001G056700--Sobic001G371300 Sobic001G056700--Sobic003G273100 Sobic002G278300 Sobic002G278300 Sobic001G056700--Sobic002G278300
Octagon: transcription factors


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