Gene annotation
Transcriptome id Sobic.009G154800.1
Synonym Sb09g021820
Functional annotation syntaxin 6, N-terminal domain containing protein, expressed
UniProt C5YYS7
Pfam PF09177
Panther DB PTHR34949 PTHR34949:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016020; membrane


Orthologs (automatic annotation)
TAIR AT1G27700 : Syntaxin/t-SNARE family protein
RAP-DB (Rice) LOC_Os05g37150.2 : syntaxin 6, N-terminal domain containing protein, expressed
MaizeGDB (Corn) Zm00025a043805 , Zm00025a050010
Brachypodium KQK06021 , KQK06022
Barley HORVU1Hr1G073840.5 , HORVU1Hr1G073840.7 , HORVU1Hr1G073840.6
Wheat TraesCS1B02G285600 , TraesCS1D02G275900 , TraesCS1A02G276400 , TraesCS1A02G276400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G433100 MAC/Perforin domain containing protein, putative, expressed -
2 Sobic.003G007500 CK1_CaseinKinase_1.1 - CK1 includes the casein kinase 1 kinases, expressed -
3 Sobic.001G051200 vesicle-associated membrane protein, putative, expressed K08511: vesicle-associated membrane protein 72
K08515: vesicle-associated membrane protein 7
4 Sobic.001G371200 SAC3/GANP family protein, putative, expressed -
5 Sobic.001G478300 modifier of rudimentary protein, expressed K12185: ESCRT-I complex subunit VPS37
6 Sobic.004G350100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
7 Sobic.009G056800 growth inhibition and differentiation-related protein 88, putative, expressed -
8 Sobic.006G209500 transcription initiation factor IIE subunit beta, putative, expressed K03137: TFIIE2, GTF2E2, transcription initiation factor TFIIE subunit beta
9 Sobic.010G058500 vesicle-associated membrane protein, putative, expressed K08515: vesicle-associated membrane protein 7
10 Sobic.001G351700 calmodulin-binding transcription activator, putative, expressed -
11 Sobic.002G313500 protein kinase PKN/PRK1, effector, putative, expressed -
12 Sobic.007G062600 mRNA cap guanine-N7 methyltransferase 1, putative, expressed K00565: mRNA (guanine-N7-)-methyltransferase
13 Sobic.001G035500 expressed protein -
14 Sobic.004G072800 expressed protein -
15 Sobic.004G283000 nucleic acid binding protein, putative, expressed -
16 Sobic.007G200600 ZOS8-11 - C2H2 zinc finger protein, expressed -
17 Sobic.010G145900 phosphatidylinositol 3- and 4-kinase family protein, putative, expressed -
18 Sobic.004G104900 CGMC_GSK.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K14502: protein brassinosteroid insensitive 2
19 Sobic.009G193400 AGC_AGC_other_NDRh_TRCd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed K08790: STK38, serine/threonine kinase 38
20 Sobic.004G298300 ELMO/CED-12 family protein, putative, expressed -


Gene co-expression network
sample Sobic009G154800 Sobic009G154800 Sobic003G433100 Sobic003G433100 Sobic009G154800--Sobic003G433100 Sobic003G007500 Sobic003G007500 Sobic009G154800--Sobic003G007500 Sobic001G051200 Sobic001G051200 Sobic009G154800--Sobic001G051200 Sobic001G371200 Sobic001G371200 Sobic009G154800--Sobic001G371200 Sobic001G478300 Sobic001G478300 Sobic009G154800--Sobic001G478300 Sobic004G350100 Sobic004G350100 Sobic009G154800--Sobic004G350100 Sobic009G056800 Sobic009G056800 Sobic009G154800--Sobic009G056800 Sobic006G209500 Sobic006G209500 Sobic009G154800--Sobic006G209500 Sobic010G058500 Sobic010G058500 Sobic009G154800--Sobic010G058500 Sobic009G193400 Sobic009G193400 Sobic003G433100--Sobic009G193400 Sobic003G433100--Sobic001G478300 Sobic007G062600 Sobic007G062600 Sobic003G433100--Sobic007G062600 Sobic004G295800 Sobic004G295800 Sobic003G433100--Sobic004G295800 Sobic004G006200 Sobic004G006200 Sobic003G433100--Sobic004G006200 Sobic003G433100--Sobic009G154800 Sobic009G228700 Sobic009G228700 Sobic003G433100--Sobic009G228700 Sobic002G424000 Sobic002G424000 Sobic003G433100--Sobic002G424000 Sobic004G021100 Sobic004G021100 Sobic003G433100--Sobic004G021100 Sobic007G186300 Sobic007G186300 Sobic003G007500--Sobic007G186300 Sobic010G083700 Sobic010G083700 Sobic003G007500--Sobic010G083700 Sobic010G168600 Sobic010G168600 Sobic003G007500--Sobic010G168600 Sobic001G078500 Sobic001G078500 Sobic003G007500--Sobic001G078500 Sobic003G295400 Sobic003G295400 Sobic003G007500--Sobic003G295400 Sobic003G007500--Sobic001G051200 Sobic004G072800 Sobic004G072800 Sobic003G007500--Sobic004G072800 Sobic004G104900 Sobic004G104900 Sobic003G007500--Sobic004G104900 Sobic002G281300 Sobic002G281300 Sobic003G007500--Sobic002G281300 Sobic003G015900 Sobic003G015900 Sobic001G051200--Sobic003G015900 Sobic001G051200--Sobic003G007500 Sobic003G261400 Sobic003G261400 Sobic001G051200--Sobic003G261400 Sobic001G047400 Sobic001G047400 Sobic001G051200--Sobic001G047400 Sobic010G000900 Sobic010G000900 Sobic001G051200--Sobic010G000900 Sobic007G168600 Sobic007G168600 Sobic001G051200--Sobic007G168600 Sobic001G051200--Sobic010G058500 Sobic002G400000 Sobic002G400000 Sobic001G051200--Sobic002G400000 Sobic001G051200--Sobic010G168600 Sobic007G118200 Sobic007G118200 Sobic001G371200--Sobic007G118200 Sobic002G313500 Sobic002G313500 Sobic001G371200--Sobic002G313500 Sobic001G466700 Sobic001G466700 Sobic001G371200--Sobic001G466700 Sobic006G252700 Sobic006G252700 Sobic001G371200--Sobic006G252700 Sobic006G278700 Sobic006G278700 Sobic001G371200--Sobic006G278700 Sobic002G378200 Sobic002G378200 Sobic001G371200--Sobic002G378200 Sobic007G200600 Sobic007G200600 Sobic001G371200--Sobic007G200600 Sobic003G081000 Sobic003G081000 Sobic001G371200--Sobic003G081000 Sobic004G283000 Sobic004G283000 Sobic001G371200--Sobic004G283000 Sobic004G231400 Sobic004G231400 Sobic001G478300--Sobic004G231400 Sobic010G071200 Sobic010G071200 Sobic001G478300--Sobic010G071200 Sobic001G478300--Sobic006G209500 Sobic001G427800 Sobic001G427800 Sobic001G478300--Sobic001G427800 Sobic001G149700 Sobic001G149700 Sobic001G478300--Sobic001G149700 Sobic010G055500 Sobic010G055500 Sobic001G478300--Sobic010G055500 Sobic004G263900 Sobic004G263900 Sobic001G478300--Sobic004G263900 Sobic003G273100 Sobic003G273100 Sobic001G478300--Sobic003G273100 Sobic004G274700 Sobic004G274700 Sobic001G478300--Sobic004G274700 Sobic004G350100--Sobic007G118200 Sobic010G033400 Sobic010G033400 Sobic004G350100--Sobic010G033400 Sobic004G350100--Sobic006G252700 Sobic004G350100--Sobic003G081000 Sobic004G007300 Sobic004G007300 Sobic004G350100--Sobic004G007300 Sobic004G350100--Sobic009G056800 Sobic004G350100--Sobic004G283000 Sobic001G143500 Sobic001G143500 Sobic004G350100--Sobic001G143500 Sobic001G028400 Sobic001G028400 Sobic004G350100--Sobic001G028400 Sobic009G056800--Sobic004G021100 Sobic006G173100 Sobic006G173100 Sobic009G056800--Sobic006G173100 Sobic009G056800--Sobic004G350100 Sobic002G388200 Sobic002G388200 Sobic009G056800--Sobic002G388200 Sobic009G056800--Sobic003G081000 Sobic001G512700 Sobic001G512700 Sobic009G056800--Sobic001G512700 Sobic002G157300 Sobic002G157300 Sobic009G056800--Sobic002G157300 Sobic009G056800--Sobic007G118200 Sobic007G104800 Sobic007G104800 Sobic009G056800--Sobic007G104800 Sobic006G209500--Sobic001G478300 Sobic004G271900 Sobic004G271900 Sobic006G209500--Sobic004G271900 Sobic006G088100 Sobic006G088100 Sobic006G209500--Sobic006G088100 Sobic003G093600 Sobic003G093600 Sobic006G209500--Sobic003G093600 Sobic002G324200 Sobic002G324200 Sobic006G209500--Sobic002G324200 Sobic009G117400 Sobic009G117400 Sobic006G209500--Sobic009G117400 Sobic004G150400 Sobic004G150400 Sobic006G209500--Sobic004G150400 Sobic002G262600 Sobic002G262600 Sobic006G209500--Sobic002G262600 Sobic007G205800 Sobic007G205800 Sobic006G209500--Sobic007G205800 Sobic010G058500--Sobic001G051200 Sobic010G058500--Sobic007G186300 Sobic010G058500--Sobic003G007500 Sobic001G067900 Sobic001G067900 Sobic010G058500--Sobic001G067900 Sobic006G254700 Sobic006G254700 Sobic010G058500--Sobic006G254700 Sobic010G058500--Sobic003G261400 Sobic003G115800 Sobic003G115800 Sobic010G058500--Sobic003G115800 Sobic010G058500--Sobic009G154800 Sobic004G234900 Sobic004G234900 Sobic010G058500--Sobic004G234900
Octagon: transcription factors


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