Gene annotation
Transcriptome id Sobic.010G058500.3,Sobic.010G058500.2,Sobic.010G058500.4
Synonym VAMP711, ATVAMP711, Sb10g005060
Functional annotation vesicle-associated membrane protein, putative, expressed
UniProt C5Z5C0
Pfam PF13774 PF00957
Panther DB PTHR21136 PTHR21136:SF104
NCBI CDD KOG0859; Synaptobrevin/VAMP-like protein
KEGG Orthology K08515; vesicle-associated membrane protein 7
Gene Ontology GO:0016192; vesicle-mediated transport GO:0016021integral component of membrane


Orthologs (automatic annotation)
TAIR AT5G11150 : vesicle-associated membrane protein 713
RAP-DB (Rice) LOC_Os06g07780.1 : vesicle-associated membrane protein, putative, expressed
MaizeGDB (Corn) Zm00025a042860
Brachypodium KQK20466 , PNT76406
Barley HORVU7Hr1G028250.2 , HORVU7Hr1G028250.3 , HORVU7Hr1G028250.1 , HORVU7Hr1G028250.4 , HORVU7Hr1G028250.5
Wheat TraesCS7B02G037300 , TraesCS7D02G136300 , TraesCS7A02G136300
Populus -


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cDNA sequences
Sobic.010G058500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G051200 vesicle-associated membrane protein, putative, expressed K08511: vesicle-associated membrane protein 72
K08515: vesicle-associated membrane protein 7
2 Sobic.007G186300 ankyrin repeat domain containing protein, putative, expressed -
3 Sobic.003G007500 CK1_CaseinKinase_1.1 - CK1 includes the casein kinase 1 kinases, expressed -
4 Sobic.001G067900 clathrin adaptor complex small chain domain containing protein, expressed K12394: AP-1 complex subunit sigma 1/2
5 Sobic.006G254700 PHF5-like protein domain containing protein, expressed K12834: PHD finger-like domain-containing protein 5A
6 Sobic.003G261400 DUF292 domain containing protein, expressed -
7 Sobic.003G115800 miro, putative, expressed K07953: GTP-binding protein SAR1
8 Sobic.009G154800 syntaxin 6, N-terminal domain containing protein, expressed -
9 Sobic.004G234900 membrane-anchored ubiquitin-fold protein, putative, expressed -
10 Sobic.004G301900 potyvirus VPg interacting protein, putative, expressed -
11 Sobic.003G226500 suppressor of G2 allele of SKP1, putative, expressed K12795: SUGT1, suppressor of G2 allele of SKP1
12 Sobic.004G072800 expressed protein -
13 Sobic.006G250900 alpha-1,4-glucan-protein synthase, putative, expressed K13379: RGP, reversibly glycosylated polypeptide / UDP-arabinopyranose mutase
14 Sobic.001G372000 OsFBT5 - F-box and tubby domain containing protein, expressed -
15 Sobic.010G030700 hydrolase, NUDIX family protein, expressed K03426: E3.6.1.22, NUDT12, NAD+ diphosphatase
16 Sobic.001G323000 UBX domain-containing protein, putative, expressed K18726: FAF2, FAS-associated factor 2
17 Sobic.001G098200 magnesium-dependent phosphatase 1, putative, expressed K17619: magnesium-dependent phosphatase 1
18 Sobic.006G254800 expressed protein K13153: U11/U12 small nuclear ribonucleoprotein 25 kDa protein
19 Sobic.001G467000 ADP-ribosylation factor, putative, expressed K07955: ADP-ribosylation factor-like protein 8
20 Sobic.004G272300 expressed protein -


Gene co-expression network
sample Sobic010G058500 Sobic010G058500 Sobic001G051200 Sobic001G051200 Sobic010G058500--Sobic001G051200 Sobic007G186300 Sobic007G186300 Sobic010G058500--Sobic007G186300 Sobic003G007500 Sobic003G007500 Sobic010G058500--Sobic003G007500 Sobic001G067900 Sobic001G067900 Sobic010G058500--Sobic001G067900 Sobic006G254700 Sobic006G254700 Sobic010G058500--Sobic006G254700 Sobic003G261400 Sobic003G261400 Sobic010G058500--Sobic003G261400 Sobic003G115800 Sobic003G115800 Sobic010G058500--Sobic003G115800 Sobic009G154800 Sobic009G154800 Sobic010G058500--Sobic009G154800 Sobic004G234900 Sobic004G234900 Sobic010G058500--Sobic004G234900 Sobic003G015900 Sobic003G015900 Sobic001G051200--Sobic003G015900 Sobic001G051200--Sobic003G007500 Sobic001G051200--Sobic003G261400 Sobic001G047400 Sobic001G047400 Sobic001G051200--Sobic001G047400 Sobic010G000900 Sobic010G000900 Sobic001G051200--Sobic010G000900 Sobic007G168600 Sobic007G168600 Sobic001G051200--Sobic007G168600 Sobic001G051200--Sobic010G058500 Sobic002G400000 Sobic002G400000 Sobic001G051200--Sobic002G400000 Sobic010G168600 Sobic010G168600 Sobic001G051200--Sobic010G168600 Sobic007G186300--Sobic003G007500 Sobic001G054200 Sobic001G054200 Sobic007G186300--Sobic001G054200 Sobic007G186300--Sobic003G115800 Sobic003G248600 Sobic003G248600 Sobic007G186300--Sobic003G248600 Sobic001G007200 Sobic001G007200 Sobic007G186300--Sobic001G007200 Sobic009G246950 Sobic009G246950 Sobic007G186300--Sobic009G246950 Sobic010G083700 Sobic010G083700 Sobic007G186300--Sobic010G083700 Sobic009G146100 Sobic009G146100 Sobic007G186300--Sobic009G146100 Sobic009G152200 Sobic009G152200 Sobic007G186300--Sobic009G152200 Sobic003G007500--Sobic007G186300 Sobic003G007500--Sobic010G083700 Sobic003G007500--Sobic010G168600 Sobic001G078500 Sobic001G078500 Sobic003G007500--Sobic001G078500 Sobic003G295400 Sobic003G295400 Sobic003G007500--Sobic003G295400 Sobic003G007500--Sobic001G051200 Sobic004G072800 Sobic004G072800 Sobic003G007500--Sobic004G072800 Sobic004G104900 Sobic004G104900 Sobic003G007500--Sobic004G104900 Sobic002G281300 Sobic002G281300 Sobic003G007500--Sobic002G281300 Sobic001G105100 Sobic001G105100 Sobic001G067900--Sobic001G105100 Sobic001G067900--Sobic004G072800 Sobic006G257001 Sobic006G257001 Sobic001G067900--Sobic006G257001 Sobic001G067900--Sobic002G281300 Sobic003G217100 Sobic003G217100 Sobic001G067900--Sobic003G217100 Sobic006G034800 Sobic006G034800 Sobic001G067900--Sobic006G034800 Sobic006G250900 Sobic006G250900 Sobic001G067900--Sobic006G250900 Sobic010G205300 Sobic010G205300 Sobic001G067900--Sobic010G205300 Sobic001G237500 Sobic001G237500 Sobic001G067900--Sobic001G237500 Sobic002G087900 Sobic002G087900 Sobic006G254700--Sobic002G087900 Sobic004G006300 Sobic004G006300 Sobic006G254700--Sobic004G006300 Sobic006G209500 Sobic006G209500 Sobic006G254700--Sobic006G209500 Sobic002G395801 Sobic002G395801 Sobic006G254700--Sobic002G395801 Sobic003G226500 Sobic003G226500 Sobic006G254700--Sobic003G226500 Sobic004G253000 Sobic004G253000 Sobic006G254700--Sobic004G253000 Sobic004G348100 Sobic004G348100 Sobic006G254700--Sobic004G348100 Sobic006G254700--Sobic007G186300 Sobic001G478300 Sobic001G478300 Sobic006G254700--Sobic001G478300 Sobic001G283200 Sobic001G283200 Sobic003G261400--Sobic001G283200 Sobic003G261400--Sobic002G281300 Sobic003G261500 Sobic003G261500 Sobic003G261400--Sobic003G261500 Sobic007G045600 Sobic007G045600 Sobic003G261400--Sobic007G045600 Sobic001G458700 Sobic001G458700 Sobic003G261400--Sobic001G458700 Sobic004G130900 Sobic004G130900 Sobic003G261400--Sobic004G130900 Sobic003G124800 Sobic003G124800 Sobic003G261400--Sobic003G124800 Sobic003G261400--Sobic001G051200 Sobic003G261400--Sobic010G000900 Sobic003G115800--Sobic007G186300 Sobic004G300900 Sobic004G300900 Sobic003G115800--Sobic004G300900 Sobic003G220600 Sobic003G220600 Sobic003G115800--Sobic003G220600 Sobic002G078400 Sobic002G078400 Sobic003G115800--Sobic002G078400 Sobic010G204300 Sobic010G204300 Sobic003G115800--Sobic010G204300 Sobic003G115800--Sobic001G054200 Sobic002G202300 Sobic002G202300 Sobic003G115800--Sobic002G202300 Sobic004G079100 Sobic004G079100 Sobic003G115800--Sobic004G079100 Sobic004G293700 Sobic004G293700 Sobic003G115800--Sobic004G293700 Sobic003G433100 Sobic003G433100 Sobic009G154800--Sobic003G433100 Sobic009G154800--Sobic003G007500 Sobic009G154800--Sobic001G051200 Sobic001G371200 Sobic001G371200 Sobic009G154800--Sobic001G371200 Sobic009G154800--Sobic001G478300 Sobic004G350100 Sobic004G350100 Sobic009G154800--Sobic004G350100 Sobic009G056800 Sobic009G056800 Sobic009G154800--Sobic009G056800 Sobic009G154800--Sobic006G209500 Sobic009G154800--Sobic010G058500 Sobic001G098200 Sobic001G098200 Sobic004G234900--Sobic001G098200 Sobic006G225600 Sobic006G225600 Sobic004G234900--Sobic006G225600 Sobic002G122700 Sobic002G122700 Sobic004G234900--Sobic002G122700 Sobic001G162100 Sobic001G162100 Sobic004G234900--Sobic001G162100 Sobic002G251700 Sobic002G251700 Sobic004G234900--Sobic002G251700 Sobic010G174500 Sobic010G174500 Sobic004G234900--Sobic010G174500 Sobic006G254800 Sobic006G254800 Sobic004G234900--Sobic006G254800 Sobic001G180900 Sobic001G180900 Sobic004G234900--Sobic001G180900 Sobic004G234900--Sobic010G000900
Octagon: transcription factors


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