Gene annotation
Transcriptome id Sobic.005G086500.1
Synonym Sb05g007040
Functional annotation clathrin adaptor complex small chain domain containing protein, expressed
UniProt C5Y7T6
Pfam PF01217
Panther DB PTHR11753 PTHR11753:SF17
NCBI CDD KOG0935; Clathrin adaptor complex, small subunit
KEGG Orthology K11827; AP-2 complex subunit sigma-1
Gene Ontology GO:0015031; protein transport GO:0008565obsolete protein transporter activity


Orthologs (automatic annotation)
TAIR AT1G47830 : SNARE-like superfamily protein
RAP-DB (Rice) LOC_Os12g10560.1 : clathrin adaptor complex small chain domain containing protein, expressed
MaizeGDB (Corn) Zm00025a025638 , Zm00025a015585
Brachypodium KQJ91878 , KQJ88773
Barley HORVU5Hr1G033310.4 , HORVU5Hr1G033310.1 , HORVU5Hr1G033310.3 , HORVU5Hr1G033310.2
Wheat TraesCS5A02G112300 , TraesCS5D02G119700 , TraesCS5A02G112300 , TraesCS5B02G113000 , TraesCS5B02G113000 , TraesCS5B02G113000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G067900 clathrin adaptor complex small chain domain containing protein, expressed K12394: AP-1 complex subunit sigma 1/2
2 Sobic.001G323300 ethylene-responsive element-binding protein, putative, expressed -
3 Sobic.007G045600 MSP domain containing protein, expressed -
4 Sobic.007G118000 double-stranded RNA binding motif containing protein, expressed -
5 Sobic.001G522900 expressed protein -
6 Sobic.004G103600 actin-related protein 2/3 complex subunit 3, putative, expressed K05756: actin related protein 2/3 complex, subunit 3
7 Sobic.007G142500 EF hand family protein, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
8 Sobic.001G458700 26S protease regulatory subunit 6B, putative, expressed K03063: PSMC4, 26S proteasome regulatory subunit T3
9 Sobic.010G188200 SFT2, putative, expressed -
10 Sobic.001G089500 RNA recognition motif containing protein, putative, expressed -
11 Sobic.007G019100 mitochondrial ribosomal protein S10, putative, expressed K02946: RP-S10, MRPS10, small subunit ribosomal protein S10
12 Sobic.004G072800 expressed protein -
13 Sobic.001G054200 green ripe-like, putative, expressed -
14 Sobic.003G248600 26S protease regulatory subunit 7, putative, expressed K03061: PSMC2, 26S proteasome regulatory subunit T1
15 Sobic.002G376300 FYVE zinc finger family protein, expressed -
16 Sobic.006G056600 ribosomal protein L4, putative, expressed K02926: RP-L4, MRPL4, large subunit ribosomal protein L4
17 Sobic.003G374000 ubiquitin-like domain-containing CTD phosphatase 1, putative, expressed K17618: ubiquitin-like domain-containing CTD phosphatase 1
18 Sobic.010G205300 secreted salivary protein, putative, expressed -
19 Sobic.006G250900 alpha-1,4-glucan-protein synthase, putative, expressed K13379: RGP, reversibly glycosylated polypeptide / UDP-arabinopyranose mutase
20 Sobic.002G281300 trafficking protein particle complex subunit, putative, expressed -


Gene co-expression network
sample Sobic005G086500 Sobic005G086500 Sobic001G067900 Sobic001G067900 Sobic005G086500--Sobic001G067900 Sobic001G323300 Sobic001G323300 Sobic005G086500--Sobic001G323300 Sobic007G045600 Sobic007G045600 Sobic005G086500--Sobic007G045600 Sobic007G118000 Sobic007G118000 Sobic005G086500--Sobic007G118000 Sobic001G522900 Sobic001G522900 Sobic005G086500--Sobic001G522900 Sobic004G103600 Sobic004G103600 Sobic005G086500--Sobic004G103600 Sobic007G142500 Sobic007G142500 Sobic005G086500--Sobic007G142500 Sobic001G458700 Sobic001G458700 Sobic005G086500--Sobic001G458700 Sobic010G188200 Sobic010G188200 Sobic005G086500--Sobic010G188200 Sobic001G105100 Sobic001G105100 Sobic001G067900--Sobic001G105100 Sobic004G072800 Sobic004G072800 Sobic001G067900--Sobic004G072800 Sobic006G257001 Sobic006G257001 Sobic001G067900--Sobic006G257001 Sobic002G281300 Sobic002G281300 Sobic001G067900--Sobic002G281300 Sobic003G217100 Sobic003G217100 Sobic001G067900--Sobic003G217100 Sobic006G034800 Sobic006G034800 Sobic001G067900--Sobic006G034800 Sobic006G250900 Sobic006G250900 Sobic001G067900--Sobic006G250900 Sobic010G205300 Sobic010G205300 Sobic001G067900--Sobic010G205300 Sobic001G237500 Sobic001G237500 Sobic001G067900--Sobic001G237500 Sobic001G323300--Sobic001G458700 Sobic001G323300--Sobic007G118000 Sobic001G323300--Sobic007G045600 Sobic004G344800 Sobic004G344800 Sobic001G323300--Sobic004G344800 Sobic001G031900 Sobic001G031900 Sobic001G323300--Sobic001G031900 Sobic001G323300--Sobic005G086500 Sobic007G176200 Sobic007G176200 Sobic001G323300--Sobic007G176200 Sobic004G030000 Sobic004G030000 Sobic001G323300--Sobic004G030000 Sobic002G157100 Sobic002G157100 Sobic001G323300--Sobic002G157100 Sobic007G114200 Sobic007G114200 Sobic007G045600--Sobic007G114200 Sobic007G019100 Sobic007G019100 Sobic007G045600--Sobic007G019100 Sobic003G124800 Sobic003G124800 Sobic007G045600--Sobic003G124800 Sobic006G232200 Sobic006G232200 Sobic007G045600--Sobic006G232200 Sobic003G261400 Sobic003G261400 Sobic007G045600--Sobic003G261400 Sobic007G045600--Sobic007G142500 Sobic004G086600 Sobic004G086600 Sobic007G045600--Sobic004G086600 Sobic001G461900 Sobic001G461900 Sobic007G045600--Sobic001G461900 Sobic007G045600--Sobic007G118000 Sobic007G118000--Sobic007G045600 Sobic001G033500 Sobic001G033500 Sobic007G118000--Sobic001G033500 Sobic001G402300 Sobic001G402300 Sobic007G118000--Sobic001G402300 Sobic003G374000 Sobic003G374000 Sobic007G118000--Sobic003G374000 Sobic007G118000--Sobic004G072800 Sobic007G118000--Sobic002G281300 Sobic007G118000--Sobic001G067900 Sobic004G141700 Sobic004G141700 Sobic007G118000--Sobic004G141700 Sobic007G118000--Sobic001G323300 Sobic007G115900 Sobic007G115900 Sobic001G522900--Sobic007G115900 Sobic001G054200 Sobic001G054200 Sobic001G522900--Sobic001G054200 Sobic001G522900--Sobic004G072800 Sobic002G378200 Sobic002G378200 Sobic001G522900--Sobic002G378200 Sobic006G254600 Sobic006G254600 Sobic001G522900--Sobic006G254600 Sobic006G258900 Sobic006G258900 Sobic001G522900--Sobic006G258900 Sobic008G165000 Sobic008G165000 Sobic001G522900--Sobic008G165000 Sobic001G522900--Sobic007G118000 Sobic003G071500 Sobic003G071500 Sobic001G522900--Sobic003G071500 Sobic004G103600--Sobic007G118000 Sobic004G103600--Sobic007G019100 Sobic001G342200 Sobic001G342200 Sobic004G103600--Sobic001G342200 Sobic001G367000 Sobic001G367000 Sobic004G103600--Sobic001G367000 Sobic004G103600--Sobic007G045600 Sobic002G296300 Sobic002G296300 Sobic004G103600--Sobic002G296300 Sobic004G103600--Sobic005G086500 Sobic003G273900 Sobic003G273900 Sobic004G103600--Sobic003G273900 Sobic004G103600--Sobic001G054200 Sobic007G142500--Sobic007G045600 Sobic007G142500--Sobic001G458700 Sobic007G142500--Sobic001G461900 Sobic007G142500--Sobic003G261400 Sobic003G323600 Sobic003G323600 Sobic007G142500--Sobic003G323600 Sobic007G142500--Sobic007G176200 Sobic009G088100 Sobic009G088100 Sobic007G142500--Sobic009G088100 Sobic004G335000 Sobic004G335000 Sobic007G142500--Sobic004G335000 Sobic007G142500--Sobic002G281300 Sobic001G458700--Sobic007G176200 Sobic006G252200 Sobic006G252200 Sobic001G458700--Sobic006G252200 Sobic001G010700 Sobic001G010700 Sobic001G458700--Sobic001G010700 Sobic002G341800 Sobic002G341800 Sobic001G458700--Sobic002G341800 Sobic004G224900 Sobic004G224900 Sobic001G458700--Sobic004G224900 Sobic003G330500 Sobic003G330500 Sobic001G458700--Sobic003G330500 Sobic001G283200 Sobic001G283200 Sobic001G458700--Sobic001G283200 Sobic001G502200 Sobic001G502200 Sobic001G458700--Sobic001G502200 Sobic004G081800 Sobic004G081800 Sobic001G458700--Sobic004G081800 Sobic001G459500 Sobic001G459500 Sobic010G188200--Sobic001G459500 Sobic010G188200--Sobic007G045600 Sobic010G188200--Sobic007G142500 Sobic010G188200--Sobic001G461900 Sobic004G289800 Sobic004G289800 Sobic010G188200--Sobic004G289800 Sobic009G135600 Sobic009G135600 Sobic010G188200--Sobic009G135600 Sobic001G512400 Sobic001G512400 Sobic010G188200--Sobic001G512400 Sobic010G188200--Sobic007G118000 Sobic010G188200--Sobic002G281300
Octagon: transcription factors


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