Gene annotation
Transcriptome id Sobic.004G103600.2,Sobic.004G103600.1
Synonym Sb04g008490, ARPC3
Functional annotation actin-related protein 2/3 complex subunit 3, putative, expressed
UniProt A0A1Z5RLY3 , C5XYN0
Pfam PF04062
Panther DB PTHR12391 PTHR12391:SF0
NCBI CDD KOG3155; Actin-related protein Arp2/3 complex, subunit ARPC3
KEGG Orthology K05756; actin related protein 2/3 complex, subunit 3
Gene Ontology GO:0005885; Arp2/3 protein complex GO:0005856cytoskeleton


Orthologs (automatic annotation)
TAIR AT1G60430 : actin-related protein C3
RAP-DB (Rice) LOC_Os02g14000.1,LOC_Os02g14000.2 : actin-related protein 2/3 complex subunit 3, putative, expressed
MaizeGDB (Corn) Zm00025a020034
Brachypodium KQJ94181
Barley HORVU7Hr1G109420.13 , HORVU7Hr1G109420.12 , HORVU7Hr1G109420.11 , HORVU7Hr1G109420.10 , HORVU7Hr1G109420.17 , HORVU7Hr1G109420.15 , HORVU7Hr1G109420.18 , HORVU7Hr1G109420.22 , HORVU7Hr1G109420.26 , HORVU7Hr1G109420.24 , HORVU7Hr1G109420.3 , HORVU7Hr1G109420.2 , HORVU7Hr1G109420.1 , HORVU7Hr1G109420.7 , HORVU7Hr1G109420.6 , HORVU7Hr1G109420.5 , HORVU7Hr1G109420.4 , HORVU7Hr1G109420.9 , HORVU7Hr1G109420.8
Wheat TraesCS7D02G472400 , TraesCS7B02G435900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G118000 double-stranded RNA binding motif containing protein, expressed -
2 Sobic.007G019100 mitochondrial ribosomal protein S10, putative, expressed K02946: RP-S10, MRPS10, small subunit ribosomal protein S10
3 Sobic.001G342200 40S ribosomal protein S15a, putative, expressed K02957: RP-S15Ae, small subunit ribosomal protein S15Ae
4 Sobic.001G367000 TRAF-type zinc finger domain-containing protein 1, putative, expressed -
5 Sobic.007G045600 MSP domain containing protein, expressed -
6 Sobic.002G296300 expressed protein -
7 Sobic.005G086500 clathrin adaptor complex small chain domain containing protein, expressed K11827: AP-2 complex subunit sigma-1
8 Sobic.003G273900 mitochondrial carrier protein, putative, expressed -
9 Sobic.001G054200 green ripe-like, putative, expressed -
10 Sobic.002G090700 WD domain, G-beta repeat domain containing protein, expressed K14004: protein transport protein SEC13
11 Sobic.001G524500 haloacid dehalogenase-like hydrolase domain-containing protein 1A, putative, expressed K00861: RFK, riboflavin kinase
12 Sobic.003G398300 mitochondrial import inner membrane translocase subunit Tim16, putative, expressed K17805: PAM16, mitochondrial import inner membrane translocase subunit TIM16
13 Sobic.002G413400 ribosomal protein, putative, expressed K14842: ribosome biogenesis protein NSA2
14 Sobic.001G323300 ethylene-responsive element-binding protein, putative, expressed -
15 Sobic.006G103100 radical SAM enzyme, putative, expressed K03644: lipA, LIAS, LIP1, lipoyl synthase
16 Sobic.002G078400 ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
17 Sobic.001G089500 RNA recognition motif containing protein, putative, expressed -
18 Sobic.006G263900 ubiquinone biosynthesis protein COQ4, putative, expressed K18586: ubiquinone biosynthesis protein COQ4
19 Sobic.003G332401 - K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
20 Sobic.001G522900 expressed protein -


Gene co-expression network
sample Sobic004G103600 Sobic004G103600 Sobic007G118000 Sobic007G118000 Sobic004G103600--Sobic007G118000 Sobic007G019100 Sobic007G019100 Sobic004G103600--Sobic007G019100 Sobic001G342200 Sobic001G342200 Sobic004G103600--Sobic001G342200 Sobic001G367000 Sobic001G367000 Sobic004G103600--Sobic001G367000 Sobic007G045600 Sobic007G045600 Sobic004G103600--Sobic007G045600 Sobic002G296300 Sobic002G296300 Sobic004G103600--Sobic002G296300 Sobic005G086500 Sobic005G086500 Sobic004G103600--Sobic005G086500 Sobic003G273900 Sobic003G273900 Sobic004G103600--Sobic003G273900 Sobic001G054200 Sobic001G054200 Sobic004G103600--Sobic001G054200 Sobic007G118000--Sobic007G045600 Sobic001G033500 Sobic001G033500 Sobic007G118000--Sobic001G033500 Sobic001G402300 Sobic001G402300 Sobic007G118000--Sobic001G402300 Sobic003G374000 Sobic003G374000 Sobic007G118000--Sobic003G374000 Sobic004G072800 Sobic004G072800 Sobic007G118000--Sobic004G072800 Sobic002G281300 Sobic002G281300 Sobic007G118000--Sobic002G281300 Sobic001G067900 Sobic001G067900 Sobic007G118000--Sobic001G067900 Sobic004G141700 Sobic004G141700 Sobic007G118000--Sobic004G141700 Sobic001G323300 Sobic001G323300 Sobic007G118000--Sobic001G323300 Sobic007G019100--Sobic007G045600 Sobic001G132100 Sobic001G132100 Sobic007G019100--Sobic001G132100 Sobic003G323600 Sobic003G323600 Sobic007G019100--Sobic003G323600 Sobic009G119900 Sobic009G119900 Sobic007G019100--Sobic009G119900 Sobic001G048832 Sobic001G048832 Sobic007G019100--Sobic001G048832 Sobic004G170400 Sobic004G170400 Sobic007G019100--Sobic004G170400 Sobic007G114200 Sobic007G114200 Sobic007G019100--Sobic007G114200 Sobic001G074700 Sobic001G074700 Sobic007G019100--Sobic001G074700 Sobic007G019100--Sobic001G342200 Sobic001G057300 Sobic001G057300 Sobic001G342200--Sobic001G057300 Sobic001G060300 Sobic001G060300 Sobic001G342200--Sobic001G060300 Sobic007G177200 Sobic007G177200 Sobic001G342200--Sobic007G177200 Sobic007G115100 Sobic007G115100 Sobic001G342200--Sobic007G115100 Sobic007G092100 Sobic007G092100 Sobic001G342200--Sobic007G092100 Sobic010G008800 Sobic010G008800 Sobic001G342200--Sobic010G008800 Sobic001G342200--Sobic004G170400 Sobic001G342200--Sobic001G074700 Sobic001G031900 Sobic001G031900 Sobic001G342200--Sobic001G031900 Sobic001G529000 Sobic001G529000 Sobic001G367000--Sobic001G529000 Sobic004G224800 Sobic004G224800 Sobic001G367000--Sobic004G224800 Sobic006G222400 Sobic006G222400 Sobic001G367000--Sobic006G222400 Sobic002G090700 Sobic002G090700 Sobic001G367000--Sobic002G090700 Sobic003G362400 Sobic003G362400 Sobic001G367000--Sobic003G362400 Sobic001G367000--Sobic001G054200 Sobic001G126200 Sobic001G126200 Sobic001G367000--Sobic001G126200 Sobic003G124800 Sobic003G124800 Sobic001G367000--Sobic003G124800 Sobic010G065400 Sobic010G065400 Sobic001G367000--Sobic010G065400 Sobic007G045600--Sobic007G114200 Sobic007G045600--Sobic007G019100 Sobic007G045600--Sobic003G124800 Sobic006G232200 Sobic006G232200 Sobic007G045600--Sobic006G232200 Sobic003G261400 Sobic003G261400 Sobic007G045600--Sobic003G261400 Sobic007G142500 Sobic007G142500 Sobic007G045600--Sobic007G142500 Sobic004G086600 Sobic004G086600 Sobic007G045600--Sobic004G086600 Sobic001G461900 Sobic001G461900 Sobic007G045600--Sobic001G461900 Sobic007G045600--Sobic007G118000 Sobic005G176000 Sobic005G176000 Sobic002G296300--Sobic005G176000 Sobic008G097401 Sobic008G097401 Sobic002G296300--Sobic008G097401 Sobic010G204300 Sobic010G204300 Sobic002G296300--Sobic010G204300 Sobic007G186300 Sobic007G186300 Sobic002G296300--Sobic007G186300 Sobic003G220600 Sobic003G220600 Sobic002G296300--Sobic003G220600 Sobic003G115800 Sobic003G115800 Sobic002G296300--Sobic003G115800 Sobic003G332401 Sobic003G332401 Sobic002G296300--Sobic003G332401 Sobic001G403700 Sobic001G403700 Sobic002G296300--Sobic001G403700 Sobic003G007500 Sobic003G007500 Sobic002G296300--Sobic003G007500 Sobic005G086500--Sobic001G067900 Sobic005G086500--Sobic001G323300 Sobic005G086500--Sobic007G045600 Sobic005G086500--Sobic007G118000 Sobic001G522900 Sobic001G522900 Sobic005G086500--Sobic001G522900 Sobic005G086500--Sobic004G103600 Sobic005G086500--Sobic007G142500 Sobic001G458700 Sobic001G458700 Sobic005G086500--Sobic001G458700 Sobic010G188200 Sobic010G188200 Sobic005G086500--Sobic010G188200 Sobic001G459500 Sobic001G459500 Sobic003G273900--Sobic001G459500 Sobic003G152900 Sobic003G152900 Sobic003G273900--Sobic003G152900 Sobic004G339300 Sobic004G339300 Sobic003G273900--Sobic004G339300 Sobic003G116600 Sobic003G116600 Sobic003G273900--Sobic003G116600 Sobic003G273900--Sobic001G342200 Sobic004G030000 Sobic004G030000 Sobic003G273900--Sobic004G030000 Sobic009G112900 Sobic009G112900 Sobic003G273900--Sobic009G112900 Sobic010G007400 Sobic010G007400 Sobic003G273900--Sobic010G007400 Sobic002G401700 Sobic002G401700 Sobic003G273900--Sobic002G401700 Sobic010G083700 Sobic010G083700 Sobic001G054200--Sobic010G083700 Sobic006G263900 Sobic006G263900 Sobic001G054200--Sobic006G263900 Sobic006G212100 Sobic006G212100 Sobic001G054200--Sobic006G212100 Sobic001G054200--Sobic007G186300 Sobic004G293700 Sobic004G293700 Sobic001G054200--Sobic004G293700 Sobic009G246950 Sobic009G246950 Sobic001G054200--Sobic009G246950 Sobic004G079100 Sobic004G079100 Sobic001G054200--Sobic004G079100 Sobic001G054200--Sobic006G232200 Sobic001G054200--Sobic003G115800
Octagon: transcription factors


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