Gene annotation
Transcriptome id Sobic.006G103100.1
Synonym Sb06g018660, LIP1
Functional annotation radical SAM enzyme, putative, expressed
UniProt C5Y9R0
Pfam PF16881 PF04055
Panther DB PTHR10949 PTHR10949:SF0
NCBI CDD -
KEGG Orthology K03644; lipA, LIAS, LIP1, lipoyl synthase
Gene Ontology GO:0003824; catalytic activity GO:0016992lipoate synthase activity GO:0009107lipoate biosynthetic process


Orthologs (automatic annotation)
TAIR AT2G20860 : lipoic acid synthase 1
RAP-DB (Rice) LOC_Os04g38330.1 : radical SAM enzyme, putative, expressed
MaizeGDB (Corn) Zm00025a011146
Brachypodium KQJ82927
Barley HORVU2Hr1G079820.2 , HORVU2Hr1G079820.3 , HORVU2Hr1G079820.1
Wheat TraesCS2D02G319600 , TraesCS2A02G341800 , TraesCS2B02G339600
Populus -


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cDNA sequences
Sobic.006G103100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G439600 26S proteasome non-ATPase regulatory subunit 4, putative, expressed K03029: PSMD4, 26S proteasome regulatory subunit N10
2 Sobic.006G263900 ubiquinone biosynthesis protein COQ4, putative, expressed K18586: ubiquinone biosynthesis protein COQ4
3 Sobic.003G124800 26S proteasome non-ATPase regulatory subunit 14, putative, expressed K03030: PSMD14, RPN11, 26S proteasome regulatory subunit N11
4 Sobic.010G083700 formin-binding protein-related, putative, expressed K13220: WBP4, WW domain-binding protein 4
5 Sobic.006G232200 SNARE domain containing protein, putative, expressed K08501: syntaxin 8
K08503: syntaxin of plants SYP5
6 Sobic.001G054200 green ripe-like, putative, expressed -
7 Sobic.001G459500 leucine rich repeat containing protein, expressed -
8 Sobic.001G388200 ELMO/CED-12 family protein, putative, expressed -
9 Sobic.002G040700 tetratricopeptide repeat, putative, expressed -
10 Sobic.002G247500 ethylene-insensitive 3, putative, expressed K14514: ethylene-insensitive protein 3
11 Sobic.004G103600 actin-related protein 2/3 complex subunit 3, putative, expressed K05756: actin related protein 2/3 complex, subunit 3
12 Sobic.010G168600 ethylene-responsive element-binding protein, putative, expressed -
13 Sobic.001G314500 ubiquitin-conjugating enzyme, putative, expressed K10577: UBE2I, ubiquitin-conjugating enzyme E2 I
14 Sobic.001G294900 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
15 Sobic.010G253800 expressed protein -
16 Sobic.002G194100 annexin, putative, expressed K17095: annexin A7/11
17 Sobic.004G224800 ubiquitin-conjugating enzyme, putative, expressed K10689: peroxin-4
18 Sobic.001G367000 TRAF-type zinc finger domain-containing protein 1, putative, expressed -
19 Sobic.001G512400 expressed protein -
20 Sobic.009G198500 ras-related protein, putative, expressed K07897: Ras-related protein Rab-7A


Gene co-expression network
sample Sobic006G103100 Sobic006G103100 Sobic001G439600 Sobic001G439600 Sobic006G103100--Sobic001G439600 Sobic006G263900 Sobic006G263900 Sobic006G103100--Sobic006G263900 Sobic003G124800 Sobic003G124800 Sobic006G103100--Sobic003G124800 Sobic010G083700 Sobic010G083700 Sobic006G103100--Sobic010G083700 Sobic006G232200 Sobic006G232200 Sobic006G103100--Sobic006G232200 Sobic001G054200 Sobic001G054200 Sobic006G103100--Sobic001G054200 Sobic001G459500 Sobic001G459500 Sobic006G103100--Sobic001G459500 Sobic001G388200 Sobic001G388200 Sobic006G103100--Sobic001G388200 Sobic002G040700 Sobic002G040700 Sobic006G103100--Sobic002G040700 Sobic001G439600--Sobic003G124800 Sobic002G129000 Sobic002G129000 Sobic001G439600--Sobic002G129000 Sobic001G439600--Sobic010G083700 Sobic001G294900 Sobic001G294900 Sobic001G439600--Sobic001G294900 Sobic001G136900 Sobic001G136900 Sobic001G439600--Sobic001G136900 Sobic001G439600--Sobic001G054200 Sobic010G168600 Sobic010G168600 Sobic001G439600--Sobic010G168600 Sobic002G256300 Sobic002G256300 Sobic001G439600--Sobic002G256300 Sobic001G529000 Sobic001G529000 Sobic001G439600--Sobic001G529000 Sobic006G263900--Sobic010G083700 Sobic006G263900--Sobic001G054200 Sobic006G263900--Sobic010G168600 Sobic001G395400 Sobic001G395400 Sobic006G263900--Sobic001G395400 Sobic001G078500 Sobic001G078500 Sobic006G263900--Sobic001G078500 Sobic006G212100 Sobic006G212100 Sobic006G263900--Sobic006G212100 Sobic010G253800 Sobic010G253800 Sobic006G263900--Sobic010G253800 Sobic009G246950 Sobic009G246950 Sobic006G263900--Sobic009G246950 Sobic003G007500 Sobic003G007500 Sobic006G263900--Sobic003G007500 Sobic009G198500 Sobic009G198500 Sobic003G124800--Sobic009G198500 Sobic003G124800--Sobic001G439600 Sobic003G124800--Sobic006G232200 Sobic001G502200 Sobic001G502200 Sobic003G124800--Sobic001G502200 Sobic007G045600 Sobic007G045600 Sobic003G124800--Sobic007G045600 Sobic003G124800--Sobic001G529000 Sobic007G168600 Sobic007G168600 Sobic003G124800--Sobic007G168600 Sobic006G150600 Sobic006G150600 Sobic003G124800--Sobic006G150600 Sobic004G066800 Sobic004G066800 Sobic003G124800--Sobic004G066800 Sobic010G083700--Sobic006G263900 Sobic010G083700--Sobic010G168600 Sobic010G083700--Sobic001G054200 Sobic001G007200 Sobic001G007200 Sobic010G083700--Sobic001G007200 Sobic010G083700--Sobic009G246950 Sobic004G293700 Sobic004G293700 Sobic010G083700--Sobic004G293700 Sobic010G083700--Sobic010G253800 Sobic010G083700--Sobic002G256300 Sobic010G083700--Sobic003G007500 Sobic006G232200--Sobic003G124800 Sobic006G232200--Sobic007G045600 Sobic001G143300 Sobic001G143300 Sobic006G232200--Sobic001G143300 Sobic006G232200--Sobic009G198500 Sobic004G130100 Sobic004G130100 Sobic006G232200--Sobic004G130100 Sobic003G323600 Sobic003G323600 Sobic006G232200--Sobic003G323600 Sobic006G232200--Sobic001G054200 Sobic008G161800 Sobic008G161800 Sobic006G232200--Sobic008G161800 Sobic006G232200--Sobic001G388200 Sobic001G054200--Sobic010G083700 Sobic001G054200--Sobic006G263900 Sobic001G054200--Sobic006G212100 Sobic007G186300 Sobic007G186300 Sobic001G054200--Sobic007G186300 Sobic001G054200--Sobic004G293700 Sobic001G054200--Sobic009G246950 Sobic004G079100 Sobic004G079100 Sobic001G054200--Sobic004G079100 Sobic001G054200--Sobic006G232200 Sobic003G115800 Sobic003G115800 Sobic001G054200--Sobic003G115800 Sobic001G459500--Sobic003G323600 Sobic001G459500--Sobic007G045600 Sobic010G188200 Sobic010G188200 Sobic001G459500--Sobic010G188200 Sobic007G142500 Sobic007G142500 Sobic001G459500--Sobic007G142500 Sobic003G398300 Sobic003G398300 Sobic001G459500--Sobic003G398300 Sobic001G459500--Sobic006G232200 Sobic003G367451 Sobic003G367451 Sobic001G459500--Sobic003G367451 Sobic001G461900 Sobic001G461900 Sobic001G459500--Sobic001G461900 Sobic004G335000 Sobic004G335000 Sobic001G459500--Sobic004G335000 Sobic003G349300 Sobic003G349300 Sobic001G388200--Sobic003G349300 Sobic001G388200--Sobic006G232200 Sobic009G135600 Sobic009G135600 Sobic001G388200--Sobic009G135600 Sobic001G388200--Sobic010G083700 Sobic002G281300 Sobic002G281300 Sobic001G388200--Sobic002G281300 Sobic001G388200--Sobic001G054200 Sobic010G000900 Sobic010G000900 Sobic001G388200--Sobic010G000900 Sobic001G314500 Sobic001G314500 Sobic001G388200--Sobic001G314500 Sobic003G261400 Sobic003G261400 Sobic001G388200--Sobic003G261400 Sobic001G512400 Sobic001G512400 Sobic002G040700--Sobic001G512400 Sobic002G040700--Sobic001G439600 Sobic008G165000 Sobic008G165000 Sobic002G040700--Sobic008G165000 Sobic001G105500 Sobic001G105500 Sobic002G040700--Sobic001G105500 Sobic007G118000 Sobic007G118000 Sobic002G040700--Sobic007G118000 Sobic004G010900 Sobic004G010900 Sobic002G040700--Sobic004G010900 Sobic003G116600 Sobic003G116600 Sobic002G040700--Sobic003G116600 Sobic001G048700 Sobic001G048700 Sobic002G040700--Sobic001G048700 Sobic001G367000 Sobic001G367000 Sobic002G040700--Sobic001G367000
Octagon: transcription factors


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