Gene annotation
Transcriptome id Sobic.007G180100.2,Sobic.007G180100.1
Synonym Sb07g025100
Functional annotation bifunctional aminoacyl-tRNA synthetase, putative, expressed
UniProt A0A1Z5RBJ6 , C5YH58
Pfam PF03129 PF00587 PF09180
Panther DB PTHR11451 PTHR11451:SF21
NCBI CDD -
KEGG Orthology K01881; PARS, prolyl-tRNA synthetase
Gene Ontology GO:0006418; tRNA aminoacylation for protein translation GO:0005524ATP binding GO:0004812aminoacyl-tRNA ligase activity GO:0000166nucleotide binding GO:0006433prolyl-tRNA aminoacylation GO:0005737cytoplasm GO:0004827proline-tRNA ligase activity


Orthologs (automatic annotation)
TAIR AT3G62120 : Class II aaRS and biotin synthetases superfamily protein
RAP-DB (Rice) LOC_Os12g25710.2,LOC_Os12g25710.1 : bifunctional aminoacyl-tRNA synthetase, putative, expressed
MaizeGDB (Corn) Zm00025a034191 , Zm00025a010112
Brachypodium KQJ86809
Barley HORVU2Hr1G072780.11 , HORVU2Hr1G072780.12 , HORVU2Hr1G072780.14 , HORVU2Hr1G072780.8 , HORVU2Hr1G072780.3 , HORVU2Hr1G072780.6 , HORVU2Hr1G072780.7 , HORVU3Hr1G093050.8 , HORVU3Hr1G093050.9 , HORVU3Hr1G093050.5 , HORVU3Hr1G093050.2 , HORVU3Hr1G093050.1 , HORVU3Hr1G093050.6 , HORVU3Hr1G093050.7 , HORVU3Hr1G093050.3 , HORVU7Hr1G041110.1 , HORVU7Hr1G041110.2 , HORVU7Hr1G041110.4 , HORVU3Hr1G093050.4 , HORVU3Hr1G093050.10
Wheat TraesCS3B02G455000 , TraesCS3D02G415200 , TraesCS7B02G107300 , TraesCS1B02G342200 , TraesCS7A02G200500 , TraesCS1B02G342200 , TraesCS7D02G203800 , TraesCS1D02G210600 , TraesCS1D02G210600 , TraesCS1D02G210600 , TraesCS3A02G419600 , TraesCS3A02G419600
Populus -


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cDNA sequences
Sobic.007G180100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G221500 glutamyl-tRNA synthetase, cytoplasmic, putative, expressed K01885: EARS, glutamyl-tRNA synthetase
2 Sobic.009G058500 phosphatidylinositolglycan-related, putative, expressed K03858: PIGH, phosphatidylinositol N-acetylglucosaminyltransferase subunit H
3 Sobic.004G353200 proteasome subunit, putative, expressed K03035: PSMD12, 26S proteasome regulatory subunit N5
4 Sobic.006G044600 eukaryotic translation initiation factor 3 subunit H, putative, expressed K03247: translation initiation factor 3 subunit H
5 Sobic.001G360200 novel plant SNARE 11, putative, expressed K08494: novel plant SNARE
6 Sobic.009G175300 bifunctional aminoacyl-tRNA synthetase, putative, expressed K01881: PARS, prolyl-tRNA synthetase
7 Sobic.002G010300 photoperiodic flowering time gene(PubMedID : 22394582)@casein kinase II subunit alpha-2, putative, expressed K03097: casein kinase II subunit alpha
8 Sobic.001G512300 outer mitochondrial membrane porin, putative, expressed K15040: voltage-dependent anion channel protein 2
9 Sobic.006G017000 WD domain, G-beta repeat domain containing protein, expressed K12862: PLRG1, PRL1, pleiotropic regulator 1
10 Sobic.004G104900 CGMC_GSK.4 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K14502: protein brassinosteroid insensitive 2
11 Sobic.004G006200 ferrochelatase-2, chloroplast precursor, putative, expressed K01772: hemH, protoporphyrin/coproporphyrin ferrochelatase
12 Sobic.001G524400 G-patch domain containing protein, expressed K11135: Pin2-interacting protein X1
13 Sobic.001G091300 HTH DNA-binding protein, putative, expressed -
14 Sobic.010G018700 H-BTB4 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed -
15 Sobic.001G047400 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
16 Sobic.009G083200 coiled-coil domain-containing protein 25, putative, expressed -
17 Sobic.006G252700 protein kinase domain containing protein, expressed -
18 Sobic.004G119200 splicing factor 3B subunit 5, putative, expressed K12832: SF3B5, splicing factor 3B subunit 5
19 Sobic.009G228800 dolichol phosphate-mannose biosynthesis regulatory protein, putative, expressed K09658: dolichol phosphate-mannose biosynthesis regulatory protein
20 Sobic.003G012200 tRNA synthetases class II domain containing protein, expressed K01876: aspartyl-tRNA synthetase


Gene co-expression network
sample Sobic007G180100 Sobic007G180100 Sobic001G221500 Sobic001G221500 Sobic007G180100--Sobic001G221500 Sobic009G058500 Sobic009G058500 Sobic007G180100--Sobic009G058500 Sobic004G353200 Sobic004G353200 Sobic007G180100--Sobic004G353200 Sobic006G044600 Sobic006G044600 Sobic007G180100--Sobic006G044600 Sobic001G360200 Sobic001G360200 Sobic007G180100--Sobic001G360200 Sobic009G175300 Sobic009G175300 Sobic007G180100--Sobic009G175300 Sobic002G010300 Sobic002G010300 Sobic007G180100--Sobic002G010300 Sobic001G512300 Sobic001G512300 Sobic007G180100--Sobic001G512300 Sobic006G017000 Sobic006G017000 Sobic007G180100--Sobic006G017000 Sobic003G366500 Sobic003G366500 Sobic001G221500--Sobic003G366500 Sobic006G182200 Sobic006G182200 Sobic001G221500--Sobic006G182200 Sobic001G221500--Sobic001G360200 Sobic010G209000 Sobic010G209000 Sobic001G221500--Sobic010G209000 Sobic001G221500--Sobic009G175300 Sobic001G221500--Sobic007G180100 Sobic004G356900 Sobic004G356900 Sobic001G221500--Sobic004G356900 Sobic006G200600 Sobic006G200600 Sobic001G221500--Sobic006G200600 Sobic007G039400 Sobic007G039400 Sobic001G221500--Sobic007G039400 Sobic009G058500--Sobic001G360200 Sobic007G184500 Sobic007G184500 Sobic009G058500--Sobic007G184500 Sobic010G018700 Sobic010G018700 Sobic009G058500--Sobic010G018700 Sobic002G077900 Sobic002G077900 Sobic009G058500--Sobic002G077900 Sobic003G439800 Sobic003G439800 Sobic009G058500--Sobic003G439800 Sobic003G074400 Sobic003G074400 Sobic009G058500--Sobic003G074400 Sobic006G278700 Sobic006G278700 Sobic009G058500--Sobic006G278700 Sobic009G058500--Sobic006G044600 Sobic004G346100 Sobic004G346100 Sobic009G058500--Sobic004G346100 Sobic004G353200--Sobic006G200600 Sobic001G392300 Sobic001G392300 Sobic004G353200--Sobic001G392300 Sobic007G075900 Sobic007G075900 Sobic004G353200--Sobic007G075900 Sobic001G007000 Sobic001G007000 Sobic004G353200--Sobic001G007000 Sobic004G066200 Sobic004G066200 Sobic004G353200--Sobic004G066200 Sobic008G047800 Sobic008G047800 Sobic004G353200--Sobic008G047800 Sobic004G274200 Sobic004G274200 Sobic004G353200--Sobic004G274200 Sobic010G053800 Sobic010G053800 Sobic004G353200--Sobic010G053800 Sobic003G102400 Sobic003G102400 Sobic004G353200--Sobic003G102400 Sobic002G341800 Sobic002G341800 Sobic006G044600--Sobic002G341800 Sobic004G194900 Sobic004G194900 Sobic006G044600--Sobic004G194900 Sobic002G394600 Sobic002G394600 Sobic006G044600--Sobic002G394600 Sobic006G044600--Sobic007G184500 Sobic007G166400 Sobic007G166400 Sobic006G044600--Sobic007G166400 Sobic001G458700 Sobic001G458700 Sobic006G044600--Sobic001G458700 Sobic006G044600--Sobic002G077900 Sobic006G044600--Sobic009G058500 Sobic008G055900 Sobic008G055900 Sobic006G044600--Sobic008G055900 Sobic001G360200--Sobic006G278700 Sobic001G360200--Sobic004G066200 Sobic001G360200--Sobic007G184500 Sobic006G252700 Sobic006G252700 Sobic001G360200--Sobic006G252700 Sobic002G300700 Sobic002G300700 Sobic001G360200--Sobic002G300700 Sobic001G143500 Sobic001G143500 Sobic001G360200--Sobic001G143500 Sobic001G360200--Sobic009G058500 Sobic009G228700 Sobic009G228700 Sobic001G360200--Sobic009G228700 Sobic006G101700 Sobic006G101700 Sobic001G360200--Sobic006G101700 Sobic009G175300--Sobic001G221500 Sobic001G226000 Sobic001G226000 Sobic009G175300--Sobic001G226000 Sobic009G175300--Sobic007G039400 Sobic001G291800 Sobic001G291800 Sobic009G175300--Sobic001G291800 Sobic001G152000 Sobic001G152000 Sobic009G175300--Sobic001G152000 Sobic009G175300--Sobic007G180100 Sobic004G133700 Sobic004G133700 Sobic009G175300--Sobic004G133700 Sobic009G175300--Sobic006G044600 Sobic004G307500 Sobic004G307500 Sobic009G175300--Sobic004G307500 Sobic007G026300 Sobic007G026300 Sobic002G010300--Sobic007G026300 Sobic001G090400 Sobic001G090400 Sobic002G010300--Sobic001G090400 Sobic004G350100 Sobic004G350100 Sobic002G010300--Sobic004G350100 Sobic009G198100 Sobic009G198100 Sobic002G010300--Sobic009G198100 Sobic004G021100 Sobic004G021100 Sobic002G010300--Sobic004G021100 Sobic003G081000 Sobic003G081000 Sobic002G010300--Sobic003G081000 Sobic006G173100 Sobic006G173100 Sobic002G010300--Sobic006G173100 Sobic001G356600 Sobic001G356600 Sobic002G010300--Sobic001G356600 Sobic002G200100 Sobic002G200100 Sobic002G010300--Sobic002G200100 Sobic001G091300 Sobic001G091300 Sobic001G512300--Sobic001G091300 Sobic001G512300--Sobic006G101700 Sobic002G281300 Sobic002G281300 Sobic001G512300--Sobic002G281300 Sobic001G085100 Sobic001G085100 Sobic001G512300--Sobic001G085100 Sobic009G207000 Sobic009G207000 Sobic001G512300--Sobic009G207000 Sobic001G512300--Sobic001G360200 Sobic009G123600 Sobic009G123600 Sobic001G512300--Sobic009G123600 Sobic001G512300--Sobic004G066200 Sobic003G007500 Sobic003G007500 Sobic001G512300--Sobic003G007500 Sobic006G017000--Sobic004G066200 Sobic006G017000--Sobic009G228700 Sobic006G017000--Sobic006G101700 Sobic006G017000--Sobic004G353200 Sobic006G017000--Sobic001G360200 Sobic006G017000--Sobic001G392300 Sobic002G347000 Sobic002G347000 Sobic006G017000--Sobic002G347000 Sobic006G017000--Sobic007G166400 Sobic010G027600 Sobic010G027600 Sobic006G017000--Sobic010G027600
Octagon: transcription factors


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