Gene annotation
Transcriptome id Sobic.010G218000.2
Synonym Sb10g026410
Functional annotation rabGAP/TBC domain-containing protein, putative, expressed
UniProt A0A1W0VU87
Pfam PF00566
Panther DB PTHR22957 PTHR22957:SF274
NCBI CDD KOG1091; Ypt/Rab-specific GTPase-activating protein GYP6
KEGG Orthology K18469; TBC1 domain family member 5
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G29950 : Ypt/Rab-GAP domain of gyp1p superfamily protein
RAP-DB (Rice) LOC_Os06g45080.1 : rabGAP/TBC domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a051650
Brachypodium KQK16960
Barley HORVU7Hr1G109940.4 , HORVU7Hr1G109940.5 , HORVU7Hr1G109940.6 , HORVU7Hr1G109940.7 , HORVU7Hr1G109940.1 , HORVU7Hr1G109940.2 , HORVU7Hr1G109940.3 , HORVU7Hr1G109940.8 , HORVU7Hr1G109940.9
Wheat TraesCS7A02G490200 , TraesCS7D02G476600 , TraesCS7D02G476600 , TraesCS7B02G393500 , TraesCS7B02G393500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G243800 - -
2 Sobic.006G222600 AT hook motif family protein, expressed -
3 Sobic.004G321100 SAC domain containing protein, putative, expressed -
4 Sobic.009G041700 Fibronectin type III domain containing protein, expressed -
5 Sobic.007G201500 rabGAP/TBC domain-containing protein, putative, expressed K18469: TBC1 domain family member 5
6 Sobic.005G177700 transmembrane protein 49, putative, expressed -
7 Sobic.007G062000 diacylglycerol kinase, putative, expressed K00901: dgkA, diacylglycerol kinase (ATP)
8 Sobic.001G332700 pentatricopeptide repeat protein PPR986-12, putative, expressed -
9 Sobic.007G172200 inositol or phosphatidylinositol phosphatase/ phosphoric monoester hydrolase, putative, expressed K18081: myotubularin-related protein 1/2
10 Sobic.004G005200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@transmembrane protein 120A, putative, expressed -
11 Sobic.010G210500 CorA-like magnesium transporter protein, putative, expressed K16075: MRS2, magnesium transporter
12 Sobic.001G253300 phosphofructokinase, putative, expressed K00850: pfkA, 6-phosphofructokinase 1
13 Sobic.008G088872 - -
14 Sobic.003G404500 dynamin family protein, putative, expressed K17065: dynamin 1-like protein
15 Sobic.003G086300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cation efflux family protein, putative, expressed -
16 Sobic.005G090300 glycerophosphoryl diester phosphodiesterase family protein, putative, expressed -
17 Sobic.005G138300 retinoblastoma-related protein-like, putative, expressed K04681: retinoblastoma-like protein 1
18 Sobic.007G056100 expressed protein K15077: elongin-A
19 Sobic.006G126500 OsFBX146 - F-box domain containing protein, expressed -
20 Sobic.001G263600 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11


Gene co-expression network
sample Sobic010G218000 Sobic010G218000 Sobic003G243800 Sobic003G243800 Sobic010G218000--Sobic003G243800 Sobic006G222600 Sobic006G222600 Sobic010G218000--Sobic006G222600 Sobic004G321100 Sobic004G321100 Sobic010G218000--Sobic004G321100 Sobic009G041700 Sobic009G041700 Sobic010G218000--Sobic009G041700 Sobic007G201500 Sobic007G201500 Sobic010G218000--Sobic007G201500 Sobic005G177700 Sobic005G177700 Sobic010G218000--Sobic005G177700 Sobic007G062000 Sobic007G062000 Sobic010G218000--Sobic007G062000 Sobic001G332700 Sobic001G332700 Sobic010G218000--Sobic001G332700 Sobic007G172200 Sobic007G172200 Sobic010G218000--Sobic007G172200 Sobic001G376200 Sobic001G376200 Sobic003G243800--Sobic001G376200 Sobic003G086300 Sobic003G086300 Sobic003G243800--Sobic003G086300 Sobic009G217400 Sobic009G217400 Sobic003G243800--Sobic009G217400 Sobic003G243800--Sobic001G332700 Sobic003G243800--Sobic010G218000 Sobic001G141400 Sobic001G141400 Sobic003G243800--Sobic001G141400 Sobic003G039900 Sobic003G039900 Sobic003G243800--Sobic003G039900 Sobic001G253300 Sobic001G253300 Sobic003G243800--Sobic001G253300 Sobic007G182000 Sobic007G182000 Sobic003G243800--Sobic007G182000 Sobic006G222600--Sobic007G201500 Sobic002G376600 Sobic002G376600 Sobic006G222600--Sobic002G376600 Sobic004G169000 Sobic004G169000 Sobic006G222600--Sobic004G169000 Sobic003G191700 Sobic003G191700 Sobic006G222600--Sobic003G191700 Sobic005G149200 Sobic005G149200 Sobic006G222600--Sobic005G149200 Sobic006G222600--Sobic010G218000 Sobic010G210500 Sobic010G210500 Sobic006G222600--Sobic010G210500 Sobic002G341000 Sobic002G341000 Sobic006G222600--Sobic002G341000 Sobic004G069000 Sobic004G069000 Sobic006G222600--Sobic004G069000 Sobic001G441400 Sobic001G441400 Sobic004G321100--Sobic001G441400 Sobic004G321100--Sobic009G041700 Sobic003G404500 Sobic003G404500 Sobic004G321100--Sobic003G404500 Sobic007G008900 Sobic007G008900 Sobic004G321100--Sobic007G008900 Sobic001G114000 Sobic001G114000 Sobic004G321100--Sobic001G114000 Sobic001G451400 Sobic001G451400 Sobic004G321100--Sobic001G451400 Sobic004G321100--Sobic005G177700 Sobic004G321100--Sobic007G172200 Sobic003G118200 Sobic003G118200 Sobic004G321100--Sobic003G118200 Sobic009G041700--Sobic001G114000 Sobic009G041700--Sobic004G321100 Sobic009G041700--Sobic005G177700 Sobic005G138300 Sobic005G138300 Sobic009G041700--Sobic005G138300 Sobic007G218000 Sobic007G218000 Sobic009G041700--Sobic007G218000 Sobic010G243400 Sobic010G243400 Sobic009G041700--Sobic010G243400 Sobic006G167600 Sobic006G167600 Sobic009G041700--Sobic006G167600 Sobic004G067700 Sobic004G067700 Sobic009G041700--Sobic004G067700 Sobic009G124700 Sobic009G124700 Sobic009G041700--Sobic009G124700 Sobic001G073500 Sobic001G073500 Sobic007G201500--Sobic001G073500 Sobic007G201500--Sobic006G222600 Sobic007G201500--Sobic010G210500 Sobic001G375100 Sobic001G375100 Sobic007G201500--Sobic001G375100 Sobic010G205100 Sobic010G205100 Sobic007G201500--Sobic010G205100 Sobic002G305000 Sobic002G305000 Sobic007G201500--Sobic002G305000 Sobic010G176200 Sobic010G176200 Sobic007G201500--Sobic010G176200 Sobic003G354600 Sobic003G354600 Sobic007G201500--Sobic003G354600 Sobic008G130000 Sobic008G130000 Sobic007G201500--Sobic008G130000 Sobic003G316200 Sobic003G316200 Sobic005G177700--Sobic003G316200 Sobic007G056100 Sobic007G056100 Sobic005G177700--Sobic007G056100 Sobic002G355800 Sobic002G355800 Sobic005G177700--Sobic002G355800 Sobic006G077300 Sobic006G077300 Sobic005G177700--Sobic006G077300 Sobic005G177700--Sobic009G041700 Sobic005G177700--Sobic001G253300 Sobic004G228800 Sobic004G228800 Sobic005G177700--Sobic004G228800 Sobic003G365100 Sobic003G365100 Sobic005G177700--Sobic003G365100 Sobic002G268800 Sobic002G268800 Sobic005G177700--Sobic002G268800 Sobic004G054100 Sobic004G054100 Sobic007G062000--Sobic004G054100 Sobic007G062000--Sobic010G210500 Sobic009G084000 Sobic009G084000 Sobic007G062000--Sobic009G084000 Sobic007G062000--Sobic003G316200 Sobic007G062000--Sobic003G354600 Sobic002G047700 Sobic002G047700 Sobic007G062000--Sobic002G047700 Sobic006G252900 Sobic006G252900 Sobic007G062000--Sobic006G252900 Sobic010G239900 Sobic010G239900 Sobic007G062000--Sobic010G239900 Sobic007G062000--Sobic002G305000 Sobic001G332700--Sobic005G138300 Sobic006G234700 Sobic006G234700 Sobic001G332700--Sobic006G234700 Sobic002G103600 Sobic002G103600 Sobic001G332700--Sobic002G103600 Sobic003G444800 Sobic003G444800 Sobic001G332700--Sobic003G444800 Sobic001G332700--Sobic003G243800 Sobic010G059500 Sobic010G059500 Sobic001G332700--Sobic010G059500 Sobic001G332700--Sobic001G376200 Sobic002G260400 Sobic002G260400 Sobic001G332700--Sobic002G260400 Sobic007G017800 Sobic007G017800 Sobic001G332700--Sobic007G017800 Sobic001G273700 Sobic001G273700 Sobic007G172200--Sobic001G273700 Sobic001G370900 Sobic001G370900 Sobic007G172200--Sobic001G370900 Sobic007G133700 Sobic007G133700 Sobic007G172200--Sobic007G133700 Sobic007G172200--Sobic003G118200 Sobic009G256400 Sobic009G256400 Sobic007G172200--Sobic009G256400 Sobic003G422500 Sobic003G422500 Sobic007G172200--Sobic003G422500 Sobic005G001000 Sobic005G001000 Sobic007G172200--Sobic005G001000 Sobic009G165700 Sobic009G165700 Sobic007G172200--Sobic009G165700 Sobic008G132600 Sobic008G132600 Sobic007G172200--Sobic008G132600
Octagon: transcription factors


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