Gene annotation
Transcriptome id Sobic.001G532400.1
Synonym Sb01g049540, OXA1L
Functional annotation inner membrane protein, putative, expressed
UniProt C5X113
Pfam PF02096
Panther DB PTHR12428 PTHR12428:SF21
NCBI CDD KOG1239; Inner membrane protein translocase involved in respiratory chain assembly
KEGG Orthology K03217; yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT2G46470 : inner membrane protein OXA1-like
RAP-DB (Rice) LOC_Os03g02480.1 : inner membrane protein, putative, expressed
MaizeGDB (Corn) Zm00025a000226
Brachypodium KQK23995
Barley HORVU4Hr1G086330.6 , HORVU4Hr1G086330.7 , HORVU4Hr1G086330.4 , HORVU4Hr1G086330.5 , HORVU4Hr1G086330.2 , HORVU4Hr1G086330.3 , HORVU4Hr1G086330.1
Wheat TraesCS4B02G357900 , TraesCS5A02G527000
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G532400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G409900 MYB family transcription factor, putative, expressed K12860: CDC5L, CDC5, pre-mRNA-splicing factor CDC5/CEF1
2 Sobic.003G021600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K13117: ATP-dependent RNA helicase DDX35
3 Sobic.003G114400 expressed protein K05288: GPI ethanolamine phosphate transferase 3 subunit O
4 Sobic.001G205100 expressed protein -
5 Sobic.001G188400 tobamovirus multiplication protein, putative, expressed -
6 Sobic.003G365100 hydrolase, alpha/beta fold family, putative, expressed -
7 Sobic.006G060000 CDP-alcohol phosphatidyltransferase, putative, expressed K00999: CDP-diacylglycerol--inositol 3-phosphatidyltransferase
8 Sobic.001G389200 endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed -
9 Sobic.002G252400 expressed protein K10706: SETX, senataxin
10 Sobic.010G169900 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
11 Sobic.009G194000 Alg9-like mannosyltransferase protein, putative, expressed K05286: GPI mannosyltransferase 3
12 Sobic.009G128500 CBS domain containing protein, expressed K16302: metal transporter CNNM
13 Sobic.008G168200 expressed protein -
14 Sobic.002G198100 pentatricopeptide, putative, expressed -
15 Sobic.006G250800 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
16 Sobic.003G181700 GPI mannosyltransferase 2, putative, expressed K07542: GPI mannosyltransferase 2
17 Sobic.008G097900 protein kinase domain containing protein, expressed -
18 Sobic.009G116900 CW-type Zinc Finger, putative, expressed -
19 Sobic.002G306100 ubiquinol-cytochrome C chaperone family protein, putative, expressed K17662: CBP3, cytochrome b pre-mRNA-processing protein 3
20 Sobic.003G316200 transmembrane protein 49, putative, expressed -


Gene co-expression network
sample Sobic001G532400 Sobic001G532400 Sobic003G409900 Sobic003G409900 Sobic001G532400--Sobic003G409900 Sobic003G021600 Sobic003G021600 Sobic001G532400--Sobic003G021600 Sobic003G114400 Sobic003G114400 Sobic001G532400--Sobic003G114400 Sobic001G205100 Sobic001G205100 Sobic001G532400--Sobic001G205100 Sobic001G188400 Sobic001G188400 Sobic001G532400--Sobic001G188400 Sobic003G365100 Sobic003G365100 Sobic001G532400--Sobic003G365100 Sobic006G060000 Sobic006G060000 Sobic001G532400--Sobic006G060000 Sobic001G389200 Sobic001G389200 Sobic001G532400--Sobic001G389200 Sobic002G252400 Sobic002G252400 Sobic001G532400--Sobic002G252400 Sobic006G106300 Sobic006G106300 Sobic003G409900--Sobic006G106300 Sobic003G409900--Sobic001G389200 Sobic003G409900--Sobic006G060000 Sobic009G122500 Sobic009G122500 Sobic003G409900--Sobic009G122500 Sobic003G409900--Sobic003G021600 Sobic010G223400 Sobic010G223400 Sobic003G409900--Sobic010G223400 Sobic004G254800 Sobic004G254800 Sobic003G409900--Sobic004G254800 Sobic001G015400 Sobic001G015400 Sobic003G409900--Sobic001G015400 Sobic009G128500 Sobic009G128500 Sobic003G409900--Sobic009G128500 Sobic009G194000 Sobic009G194000 Sobic003G021600--Sobic009G194000 Sobic003G181700 Sobic003G181700 Sobic003G021600--Sobic003G181700 Sobic003G190200 Sobic003G190200 Sobic003G021600--Sobic003G190200 Sobic002G227500 Sobic002G227500 Sobic003G021600--Sobic002G227500 Sobic009G040325 Sobic009G040325 Sobic003G021600--Sobic009G040325 Sobic009G040250 Sobic009G040250 Sobic003G021600--Sobic009G040250 Sobic003G394500 Sobic003G394500 Sobic003G021600--Sobic003G394500 Sobic001G308400 Sobic001G308400 Sobic003G021600--Sobic001G308400 Sobic001G043200 Sobic001G043200 Sobic003G021600--Sobic001G043200 Sobic006G260500 Sobic006G260500 Sobic003G114400--Sobic006G260500 Sobic005G062200 Sobic005G062200 Sobic003G114400--Sobic005G062200 Sobic008G088872 Sobic008G088872 Sobic003G114400--Sobic008G088872 Sobic006G077300 Sobic006G077300 Sobic003G114400--Sobic006G077300 Sobic005G090300 Sobic005G090300 Sobic003G114400--Sobic005G090300 Sobic006G184900 Sobic006G184900 Sobic003G114400--Sobic006G184900 Sobic003G114400--Sobic002G252400 Sobic003G316200 Sobic003G316200 Sobic003G114400--Sobic003G316200 Sobic004G241900 Sobic004G241900 Sobic003G114400--Sobic004G241900 Sobic008G168200 Sobic008G168200 Sobic001G205100--Sobic008G168200 Sobic008G097900 Sobic008G097900 Sobic001G205100--Sobic008G097900 Sobic001G205100--Sobic001G389200 Sobic003G156400 Sobic003G156400 Sobic001G205100--Sobic003G156400 Sobic001G205100--Sobic003G021600 Sobic008G171400 Sobic008G171400 Sobic001G205100--Sobic008G171400 Sobic001G205100--Sobic006G060000 Sobic004G130400 Sobic004G130400 Sobic001G205100--Sobic004G130400 Sobic003G397900 Sobic003G397900 Sobic001G205100--Sobic003G397900 Sobic006G115100 Sobic006G115100 Sobic001G188400--Sobic006G115100 Sobic001G253300 Sobic001G253300 Sobic001G188400--Sobic001G253300 Sobic001G188400--Sobic003G316200 Sobic006G250800 Sobic006G250800 Sobic001G188400--Sobic006G250800 Sobic007G004300 Sobic007G004300 Sobic001G188400--Sobic007G004300 Sobic002G079000 Sobic002G079000 Sobic001G188400--Sobic002G079000 Sobic002G355800 Sobic002G355800 Sobic001G188400--Sobic002G355800 Sobic002G084800 Sobic002G084800 Sobic001G188400--Sobic002G084800 Sobic008G055500 Sobic008G055500 Sobic001G188400--Sobic008G055500 Sobic003G365100--Sobic003G316200 Sobic002G306100 Sobic002G306100 Sobic003G365100--Sobic002G306100 Sobic003G365100--Sobic001G253300 Sobic005G177700 Sobic005G177700 Sobic003G365100--Sobic005G177700 Sobic003G365100--Sobic003G156400 Sobic007G182000 Sobic007G182000 Sobic003G365100--Sobic007G182000 Sobic003G365100--Sobic006G250800 Sobic003G365100--Sobic001G188400 Sobic003G365100--Sobic005G090300 Sobic006G060000--Sobic008G055500 Sobic004G350700 Sobic004G350700 Sobic006G060000--Sobic004G350700 Sobic007G172700 Sobic007G172700 Sobic006G060000--Sobic007G172700 Sobic001G114200 Sobic001G114200 Sobic006G060000--Sobic001G114200 Sobic006G060000--Sobic003G394500 Sobic006G060000--Sobic001G389200 Sobic004G263500 Sobic004G263500 Sobic006G060000--Sobic004G263500 Sobic003G117800 Sobic003G117800 Sobic006G060000--Sobic003G117800 Sobic001G490900 Sobic001G490900 Sobic006G060000--Sobic001G490900 Sobic001G389200--Sobic006G060000 Sobic001G389200--Sobic008G168200 Sobic002G395500 Sobic002G395500 Sobic001G389200--Sobic002G395500 Sobic001G389200--Sobic002G355800 Sobic001G389200--Sobic004G254800 Sobic004G078700 Sobic004G078700 Sobic001G389200--Sobic004G078700 Sobic001G389200--Sobic007G172700 Sobic010G169900 Sobic010G169900 Sobic001G389200--Sobic010G169900 Sobic001G389200--Sobic009G122500 Sobic002G252400--Sobic003G114400 Sobic002G252400--Sobic010G169900 Sobic008G037700 Sobic008G037700 Sobic002G252400--Sobic008G037700 Sobic003G310300 Sobic003G310300 Sobic002G252400--Sobic003G310300 Sobic009G116900 Sobic009G116900 Sobic002G252400--Sobic009G116900 Sobic002G252400--Sobic006G250800 Sobic002G252400--Sobic002G084800 Sobic002G252400--Sobic002G079000 Sobic002G252400--Sobic003G021600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.