Gene annotation
Transcriptome id Sobic.008G097900.1,Sobic.008G097900.3,Sobic.008G097900.2
Synonym Sb08g014920, CRK40
Functional annotation protein kinase domain containing protein, expressed
UniProt C5YNQ9 , A0A1B6PCR5 , A0A1Z5R6Q1
Pfam PF08711 PF07714 PF08711 PF00069
Panther DB PTHR27002 PTHR27002:SF111
NCBI CDD KOG1187; Serine/threonine protein kinase KOG0198MEKK and related serine/threonine protein kinases
KEGG Orthology -
Gene Ontology GO:0006351; transcription, DNA-templated GO:0005634nucleus GO:0003677DNA binding GO:0006468protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity GO:0006351transcription, DNA-templated GO:0005634nucleus GO:0003677DNA binding GO:0006468protein phosphorylation GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT4G04570 : cysteine-rich RLK (RECEPTOR-like protein kinase) 40,BAH domain ;TFIIS helical bundle-like domain
RAP-DB (Rice) LOC_Os11g11780.1,LOC_Os10g12620.1 : protein kinase domain containing protein, expressed,cysteine-rich receptor-like protein kinase 21 precursor, putative, expressed
MaizeGDB (Corn) Zm00025a051830 , Zm00025a051831 , Zm00025a003481
Brachypodium -
Barley HORVU7Hr1G109200.1
Wheat TraesCS7B02G494200 , TraesCS2B02G038000 , TraesCS2A02G578900 , TraesCS2B02G036700 , TraesCS2B02G036700 , TraesCS7B02G494500
Populus -


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cDNA sequences
Sobic.008G097900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G172700 ECT5, putative, expressed -
2 Sobic.008G152700 expressed protein K07541: GPI mannosyltransferase 1 subunit X
3 Sobic.004G350700 kelch repeat protein, putative, expressed -
4 Sobic.001G411900 TBC domain containing protein, expressed -
5 Sobic.001G205100 expressed protein -
6 Sobic.004G077300 guanine nucleotide exchange family protein, putative, expressed K18442: ARFGEF, brefeldin A-inhibited guanine nucleotide-exchange protein
7 Sobic.001G501900 appr-1-p processing enzyme family protein, putative, expressed -
8 Sobic.001G253300 phosphofructokinase, putative, expressed K00850: pfkA, 6-phosphofructokinase 1
9 Sobic.002G117600 myosin, putative, expressed K10357: myosin V
10 Sobic.003G394500 GPI transamidase component PIG-S-related, putative, expressed K05291: GPI-anchor transamidase subunit S
11 Sobic.001G378800 fumarate hydratase, mitochondrial precursor, putative, expressed K01679: E4.2.1.2B, fumC, fumarate hydratase, class II
12 Sobic.003G156400 OsPDIL2-2 protein disulfide isomerase PDIL2-2, expressed K09584: PDIA6, protein disulfide-isomerase A6
13 Sobic.006G060000 CDP-alcohol phosphatidyltransferase, putative, expressed K00999: CDP-diacylglycerol--inositol 3-phosphatidyltransferase
14 Sobic.008G055500 Protein-tyrosine phosphatase domain containing protein, expressed -
15 Sobic.003G021600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K13117: ATP-dependent RNA helicase DDX35
16 Sobic.001G149000 FAR1 family protein, expressed -
17 Sobic.004G263500 DnaK family protein, putative, expressed K09486: hypoxia up-regulated 1
18 Sobic.009G116900 CW-type Zinc Finger, putative, expressed -
19 Sobic.004G254800 heat shock protein DnaJ, putative, expressed K19371: DnaJ homolog subfamily C member 25
20 Sobic.001G047600 2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed K00627: DLAT, aceF, pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase)


Gene co-expression network
sample Sobic008G097900 Sobic008G097900 Sobic007G172700 Sobic007G172700 Sobic008G097900--Sobic007G172700 Sobic008G152700 Sobic008G152700 Sobic008G097900--Sobic008G152700 Sobic004G350700 Sobic004G350700 Sobic008G097900--Sobic004G350700 Sobic001G411900 Sobic001G411900 Sobic008G097900--Sobic001G411900 Sobic001G205100 Sobic001G205100 Sobic008G097900--Sobic001G205100 Sobic004G077300 Sobic004G077300 Sobic008G097900--Sobic004G077300 Sobic001G501900 Sobic001G501900 Sobic008G097900--Sobic001G501900 Sobic001G253300 Sobic001G253300 Sobic008G097900--Sobic001G253300 Sobic002G117600 Sobic002G117600 Sobic008G097900--Sobic002G117600 Sobic006G060000 Sobic006G060000 Sobic007G172700--Sobic006G060000 Sobic007G172700--Sobic004G350700 Sobic007G172700--Sobic008G152700 Sobic003G190200 Sobic003G190200 Sobic007G172700--Sobic003G190200 Sobic003G394500 Sobic003G394500 Sobic007G172700--Sobic003G394500 Sobic003G058500 Sobic003G058500 Sobic007G172700--Sobic003G058500 Sobic002G355800 Sobic002G355800 Sobic007G172700--Sobic002G355800 Sobic001G424800 Sobic001G424800 Sobic007G172700--Sobic001G424800 Sobic007G030100 Sobic007G030100 Sobic007G172700--Sobic007G030100 Sobic001G149000 Sobic001G149000 Sobic008G152700--Sobic001G149000 Sobic003G385300 Sobic003G385300 Sobic008G152700--Sobic003G385300 Sobic003G117800 Sobic003G117800 Sobic008G152700--Sobic003G117800 Sobic008G152700--Sobic004G077300 Sobic009G046900 Sobic009G046900 Sobic008G152700--Sobic009G046900 Sobic008G152700--Sobic007G172700 Sobic003G428000 Sobic003G428000 Sobic008G152700--Sobic003G428000 Sobic008G152700--Sobic003G394500 Sobic001G385000 Sobic001G385000 Sobic008G152700--Sobic001G385000 Sobic008G055500 Sobic008G055500 Sobic004G350700--Sobic008G055500 Sobic004G350700--Sobic003G394500 Sobic004G350700--Sobic003G385300 Sobic004G350700--Sobic001G424800 Sobic004G350700--Sobic006G060000 Sobic004G350700--Sobic001G149000 Sobic004G350700--Sobic007G172700 Sobic001G114200 Sobic001G114200 Sobic004G350700--Sobic001G114200 Sobic004G350700--Sobic003G117800 Sobic001G411900--Sobic008G097900 Sobic001G411900--Sobic003G190200 Sobic001G411900--Sobic007G172700 Sobic009G122500 Sobic009G122500 Sobic001G411900--Sobic009G122500 Sobic003G021600 Sobic003G021600 Sobic001G411900--Sobic003G021600 Sobic001G411900--Sobic002G117600 Sobic009G194000 Sobic009G194000 Sobic001G411900--Sobic009G194000 Sobic004G122900 Sobic004G122900 Sobic001G411900--Sobic004G122900 Sobic001G411900--Sobic003G394500 Sobic008G168200 Sobic008G168200 Sobic001G205100--Sobic008G168200 Sobic001G205100--Sobic008G097900 Sobic001G389200 Sobic001G389200 Sobic001G205100--Sobic001G389200 Sobic003G156400 Sobic003G156400 Sobic001G205100--Sobic003G156400 Sobic001G205100--Sobic003G021600 Sobic008G171400 Sobic008G171400 Sobic001G205100--Sobic008G171400 Sobic001G205100--Sobic006G060000 Sobic004G130400 Sobic004G130400 Sobic001G205100--Sobic004G130400 Sobic003G397900 Sobic003G397900 Sobic001G205100--Sobic003G397900 Sobic004G077300--Sobic001G149000 Sobic004G077300--Sobic003G385300 Sobic004G077300--Sobic008G152700 Sobic004G176200 Sobic004G176200 Sobic004G077300--Sobic004G176200 Sobic001G378800 Sobic001G378800 Sobic004G077300--Sobic001G378800 Sobic006G080700 Sobic006G080700 Sobic004G077300--Sobic006G080700 Sobic001G384200 Sobic001G384200 Sobic004G077300--Sobic001G384200 Sobic004G077300--Sobic004G350700 Sobic002G180800 Sobic002G180800 Sobic004G077300--Sobic002G180800 Sobic001G501900--Sobic004G350700 Sobic001G501900--Sobic003G385300 Sobic001G501900--Sobic008G055500 Sobic002G304700 Sobic002G304700 Sobic001G501900--Sobic002G304700 Sobic010G160300 Sobic010G160300 Sobic001G501900--Sobic010G160300 Sobic001G501900--Sobic004G077300 Sobic001G501900--Sobic001G424800 Sobic001G501900--Sobic008G152700 Sobic001G501900--Sobic003G117800 Sobic003G316200 Sobic003G316200 Sobic001G253300--Sobic003G316200 Sobic001G188400 Sobic001G188400 Sobic001G253300--Sobic001G188400 Sobic001G253300--Sobic007G172700 Sobic001G253300--Sobic008G097900 Sobic003G365100 Sobic003G365100 Sobic001G253300--Sobic003G365100 Sobic005G177700 Sobic005G177700 Sobic001G253300--Sobic005G177700 Sobic001G253300--Sobic002G355800 Sobic006G250800 Sobic006G250800 Sobic001G253300--Sobic006G250800 Sobic009G162100 Sobic009G162100 Sobic001G253300--Sobic009G162100 Sobic002G117600--Sobic008G097900 Sobic002G117600--Sobic003G190200 SobicK043400 SobicK043400 Sobic002G117600--SobicK043400 Sobic002G117600--Sobic004G077300 Sobic002G117600--Sobic001G501900 Sobic002G117600--Sobic001G378800 Sobic010G171000 Sobic010G171000 Sobic002G117600--Sobic010G171000 Sobic002G117600--Sobic007G172700 Sobic002G117600--Sobic001G411900
Octagon: transcription factors


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