Gene annotation
Transcriptome id Sobic.008G176000.1
Synonym UBP8, Sb08g022020
Functional annotation ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
UniProt A0A1Z5R7F0
Pfam PF13423
Panther DB PTHR24006 PTHR24006:SF520
NCBI CDD -
KEGG Orthology K11835; USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G22030 : ubiquitin-specific protease 8
RAP-DB (Rice) LOC_Os12g42600.1 : ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a025131 , Zm00025a012645
Brachypodium KQJ85733
Barley HORVU5Hr1G007550.10 , HORVU5Hr1G007550.11 , HORVU4Hr1G035290.15 , HORVU4Hr1G035290.14 , HORVU4Hr1G035290.13 , HORVU4Hr1G035290.12 , HORVU4Hr1G035290.11 , HORVU4Hr1G035290.10 , HORVU5Hr1G007550.4 , HORVU5Hr1G007550.5 , HORVU5Hr1G007550.6 , HORVU5Hr1G007550.7 , HORVU5Hr1G007550.1 , HORVU5Hr1G007550.2 , HORVU5Hr1G007550.3 , HORVU5Hr1G007550.8 , HORVU5Hr1G007550.9 , HORVU4Hr1G035290.7 , HORVU4Hr1G035290.6 , HORVU4Hr1G035290.5 , HORVU4Hr1G035290.4 , HORVU4Hr1G035290.3 , HORVU4Hr1G035290.2 , HORVU4Hr1G035290.1 , HORVU4Hr1G035290.9 , HORVU4Hr1G035290.8
Wheat TraesCS5A02G027000 , TraesCS4B02G148000 , TraesCS4B02G148000 , TraesCS4B02G148000 , TraesCS4B02G148000 , TraesCS4B02G148000 , TraesCS4D02G153200 , TraesCS4D02G153200 , TraesCS4D02G153200 , TraesCS4D02G153200 , TraesCS5B02G026200 , TraesCS4A02G139900 , TraesCS4A02G139900 , TraesCS4A02G139900 , TraesCS5D02G034700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G037700 pentatricopeptide containing protein, putative, expressed -
2 Sobic.001G118000 phosphatidylinositol 4-kinase PI4K, putative, expressed K00888: phosphatidylinositol 4-kinase A
3 Sobic.003G346400 vacuolar ATP synthase 98 kDa subunit, putative, expressed K02154: ATPeV0A, V-type H+-transporting ATPase subunit a
4 Sobic.006G021700 expressed protein K17600: vacuolar protein sorting-associated protein 54
5 Sobic.010G169900 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
6 Sobic.006G128100 lipase, putative, expressed -
7 Sobic.001G156900 single myb histone, putative, expressed K09422: transcription factor MYB, plant
8 Sobic.010G192600 tubulin binding cofactor C, putative, expressed K16810: TBCC domain-containing protein 1
9 Sobic.001G030000 FG-GAP repeat-containing protein, putative, expressed -
10 Sobic.001G389200 endoplasmic reticulum-Golgi intermediate compartment protein 3, putative, expressed -
11 Sobic.005G059500 expressed protein -
12 Sobic.007G172700 ECT5, putative, expressed -
13 Sobic.009G122500 expressed protein -
14 Sobic.002G119600 histone-lysine N-methyltransferase, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
15 Sobic.003G189600 M16 domain containing zinc peptidase, putative, expressed -
16 Sobic.010G230600 DnaK family protein, putative, expressed K09489: heat shock 70kDa protein 4
17 Sobic.002G252400 expressed protein K10706: SETX, senataxin
18 Sobic.001G411900 TBC domain containing protein, expressed -
19 Sobic.006G077300 expressed protein K17637: EXOC2, exocyst complex component 2
20 Sobic.001G308400 expressed protein -


Gene co-expression network
sample Sobic008G176000 Sobic008G176000 Sobic008G037700 Sobic008G037700 Sobic008G176000--Sobic008G037700 Sobic001G118000 Sobic001G118000 Sobic008G176000--Sobic001G118000 Sobic003G346400 Sobic003G346400 Sobic008G176000--Sobic003G346400 Sobic006G021700 Sobic006G021700 Sobic008G176000--Sobic006G021700 Sobic010G169900 Sobic010G169900 Sobic008G176000--Sobic010G169900 Sobic006G128100 Sobic006G128100 Sobic008G176000--Sobic006G128100 Sobic001G156900 Sobic001G156900 Sobic008G176000--Sobic001G156900 Sobic010G192600 Sobic010G192600 Sobic008G176000--Sobic010G192600 Sobic001G030000 Sobic001G030000 Sobic008G176000--Sobic001G030000 Sobic002G252400 Sobic002G252400 Sobic008G037700--Sobic002G252400 Sobic002G084800 Sobic002G084800 Sobic008G037700--Sobic002G084800 Sobic009G116900 Sobic009G116900 Sobic008G037700--Sobic009G116900 Sobic006G106300 Sobic006G106300 Sobic008G037700--Sobic006G106300 Sobic008G037700--Sobic008G176000 Sobic010G091400 Sobic010G091400 Sobic008G037700--Sobic010G091400 Sobic008G037700--Sobic010G169900 Sobic003G409900 Sobic003G409900 Sobic008G037700--Sobic003G409900 Sobic003G021600 Sobic003G021600 Sobic008G037700--Sobic003G021600 Sobic005G059500 Sobic005G059500 Sobic001G118000--Sobic005G059500 Sobic009G122500 Sobic009G122500 Sobic001G118000--Sobic009G122500 Sobic010G223400 Sobic010G223400 Sobic001G118000--Sobic010G223400 Sobic003G334700 Sobic003G334700 Sobic001G118000--Sobic003G334700 Sobic007G172700 Sobic007G172700 Sobic001G118000--Sobic007G172700 Sobic001G308400 Sobic001G308400 Sobic001G118000--Sobic001G308400 Sobic004G060300 Sobic004G060300 Sobic001G118000--Sobic004G060300 Sobic009G040325 Sobic009G040325 Sobic001G118000--Sobic009G040325 Sobic001G118000--Sobic001G156900 Sobic004G254800 Sobic004G254800 Sobic003G346400--Sobic004G254800 Sobic003G346400--Sobic006G021700 Sobic003G346400--Sobic004G060300 Sobic003G394200 Sobic003G394200 Sobic003G346400--Sobic003G394200 Sobic006G203300 Sobic006G203300 Sobic003G346400--Sobic006G203300 Sobic001G445500 Sobic001G445500 Sobic003G346400--Sobic001G445500 Sobic003G209200 Sobic003G209200 Sobic003G346400--Sobic003G209200 Sobic001G161700 Sobic001G161700 Sobic003G346400--Sobic001G161700 Sobic001G012900 Sobic001G012900 Sobic003G346400--Sobic001G012900 Sobic008G124800 Sobic008G124800 Sobic006G021700--Sobic008G124800 Sobic006G077300 Sobic006G077300 Sobic006G021700--Sobic006G077300 Sobic002G340900 Sobic002G340900 Sobic006G021700--Sobic002G340900 Sobic006G021700--Sobic005G059500 Sobic006G021700--Sobic003G209200 Sobic006G021700--Sobic003G346400 Sobic010G000800 Sobic010G000800 Sobic006G021700--Sobic010G000800 Sobic007G005500 Sobic007G005500 Sobic006G021700--Sobic007G005500 Sobic005G110499 Sobic005G110499 Sobic006G021700--Sobic005G110499 Sobic010G169900--Sobic001G308400 Sobic002G079000 Sobic002G079000 Sobic010G169900--Sobic002G079000 Sobic009G128500 Sobic009G128500 Sobic010G169900--Sobic009G128500 Sobic002G355800 Sobic002G355800 Sobic010G169900--Sobic002G355800 Sobic002G227500 Sobic002G227500 Sobic010G169900--Sobic002G227500 Sobic010G169900--Sobic006G128100 Sobic009G194000 Sobic009G194000 Sobic010G169900--Sobic009G194000 Sobic001G389200 Sobic001G389200 Sobic010G169900--Sobic001G389200 Sobic001G490900 Sobic001G490900 Sobic010G169900--Sobic001G490900 Sobic006G128100--Sobic003G394200 Sobic006G128100--Sobic001G308400 Sobic006G128100--Sobic002G355800 Sobic006G128100--Sobic010G169900 Sobic006G128100--Sobic002G079000 Sobic010G213500 Sobic010G213500 Sobic006G128100--Sobic010G213500 Sobic003G189600 Sobic003G189600 Sobic006G128100--Sobic003G189600 Sobic006G128100--Sobic003G346400 Sobic006G210700 Sobic006G210700 Sobic006G128100--Sobic006G210700 Sobic001G156900--Sobic009G122500 Sobic002G119600 Sobic002G119600 Sobic001G156900--Sobic002G119600 Sobic001G156900--Sobic001G308400 Sobic001G156900--Sobic002G227500 Sobic004G122900 Sobic004G122900 Sobic001G156900--Sobic004G122900 Sobic001G335000 Sobic001G335000 Sobic001G156900--Sobic001G335000 Sobic001G156900--Sobic010G169900 Sobic003G181700 Sobic003G181700 Sobic001G156900--Sobic003G181700 Sobic001G156900--Sobic005G110499 Sobic001G097900 Sobic001G097900 Sobic010G192600--Sobic001G097900 Sobic001G474400 Sobic001G474400 Sobic010G192600--Sobic001G474400 Sobic001G358500 Sobic001G358500 Sobic010G192600--Sobic001G358500 Sobic007G118500 Sobic007G118500 Sobic010G192600--Sobic007G118500 Sobic008G085700 Sobic008G085700 Sobic010G192600--Sobic008G085700 Sobic010G192600--Sobic005G110499 Sobic002G364900 Sobic002G364900 Sobic010G192600--Sobic002G364900 Sobic001G115700 Sobic001G115700 Sobic010G192600--Sobic001G115700 Sobic003G304400 Sobic003G304400 Sobic010G192600--Sobic003G304400 Sobic001G030000--Sobic001G308400 Sobic004G141800 Sobic004G141800 Sobic001G030000--Sobic004G141800 Sobic001G030000--Sobic010G169900 Sobic003G043000 Sobic003G043000 Sobic001G030000--Sobic003G043000 Sobic004G265500 Sobic004G265500 Sobic001G030000--Sobic004G265500 Sobic001G030000--Sobic002G227500 Sobic001G030000--Sobic005G110499 Sobic003G405500 Sobic003G405500 Sobic001G030000--Sobic003G405500 Sobic003G163200 Sobic003G163200 Sobic001G030000--Sobic003G163200
Octagon: transcription factors


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