Gene annotation
Transcriptome id Sobic.002G406300.1
Synonym Sb02g042030, NOP56
Functional annotation nucleolar protein 5A, putative, expressed
UniProt C5X4T2
Pfam PF08156 PF01798
Panther DB PTHR10894 PTHR10894:SF0
NCBI CDD -
KEGG Orthology K14564; nucleolar protein 56
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G56110 : homolog of nucleolar protein NOP56
RAP-DB (Rice) LOC_Os03g22880.1 : nucleolar protein 5A, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK14809 , KQK17049 , KQK17048
Barley HORVU2Hr1G022140.4 , HORVU2Hr1G022140.1 , HORVU2Hr1G022140.3 , HORVU2Hr1G022140.2 , HORVU2Hr1G022110.2 , HORVU2Hr1G022110.3 , HORVU2Hr1G022110.1 , HORVU1Hr1G083960.5 , HORVU1Hr1G083960.4 , HORVU1Hr1G083960.6 , HORVU1Hr1G083960.1 , HORVU1Hr1G083960.3 , HORVU1Hr1G083960.2 , HORVU2Hr1G022120.1
Wheat TraesCS1D02G386500 , TraesCS1A02G379300 , TraesCS1A02G379300 , TraesCS1B02G401000 , TraesCS2D02G128600 , TraesCS2B02G148000 , TraesCS2A02G125500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G055500 Protein-tyrosine phosphatase domain containing protein, expressed -
2 Sobic.009G194000 Alg9-like mannosyltransferase protein, putative, expressed K05286: GPI mannosyltransferase 3
3 Sobic.006G060000 CDP-alcohol phosphatidyltransferase, putative, expressed K00999: CDP-diacylglycerol--inositol 3-phosphatidyltransferase
4 Sobic.003G402800 DUF647 domain containing protein, putative, expressed -
5 Sobic.010G091400 AAA-type ATPase family protein, putative, expressed -
6 Sobic.001G532400 inner membrane protein, putative, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
7 Sobic.002G057400 expressed protein K16586: HAUS augmin-like complex subunit 3
8 Sobic.003G436000 expressed protein -
9 Sobic.001G501900 appr-1-p processing enzyme family protein, putative, expressed -
10 Sobic.007G099900 - -
11 Sobic.001G141400 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
12 Sobic.004G350700 kelch repeat protein, putative, expressed -
13 Sobic.003G021600 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K13117: ATP-dependent RNA helicase DDX35
14 Sobic.001G498800 UAA transporter family domain containing protein, expressed K15272: solute carrier family 35 (UDP-sugar transporter), member A1/2/3
15 Sobic.003G039900 OsFBDUF1 - F-box and DUF domain containing protein, expressed -
16 Sobic.004G193300 phosphatidylinositolglycan class N family protein, expressed K05285: GPI ethanolamine phosphate transferase 1
17 Sobic.010G169900 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
18 Sobic.001G287000 expressed protein -
19 Sobic.001G114200 transmembrane anterior posterior transformation 1, putative, expressed -
20 Sobic.007G076400 expressed protein -


Gene co-expression network
sample Sobic002G406300 Sobic002G406300 Sobic008G055500 Sobic008G055500 Sobic002G406300--Sobic008G055500 Sobic009G194000 Sobic009G194000 Sobic002G406300--Sobic009G194000 Sobic006G060000 Sobic006G060000 Sobic002G406300--Sobic006G060000 Sobic003G402800 Sobic003G402800 Sobic002G406300--Sobic003G402800 Sobic010G091400 Sobic010G091400 Sobic002G406300--Sobic010G091400 Sobic001G532400 Sobic001G532400 Sobic002G406300--Sobic001G532400 Sobic002G057400 Sobic002G057400 Sobic002G406300--Sobic002G057400 Sobic003G436000 Sobic003G436000 Sobic002G406300--Sobic003G436000 Sobic001G501900 Sobic001G501900 Sobic002G406300--Sobic001G501900 Sobic008G055500--Sobic003G402800 Sobic008G055500--Sobic006G060000 Sobic004G350700 Sobic004G350700 Sobic008G055500--Sobic004G350700 Sobic003G385300 Sobic003G385300 Sobic008G055500--Sobic003G385300 Sobic003G117800 Sobic003G117800 Sobic008G055500--Sobic003G117800 Sobic001G257800 Sobic001G257800 Sobic008G055500--Sobic001G257800 Sobic008G152700 Sobic008G152700 Sobic008G055500--Sobic008G152700 Sobic004G176200 Sobic004G176200 Sobic008G055500--Sobic004G176200 Sobic008G055500--Sobic001G501900 Sobic003G181700 Sobic003G181700 Sobic009G194000--Sobic003G181700 Sobic003G021600 Sobic003G021600 Sobic009G194000--Sobic003G021600 Sobic001G490900 Sobic001G490900 Sobic009G194000--Sobic001G490900 Sobic010G169900 Sobic010G169900 Sobic009G194000--Sobic010G169900 Sobic004G122900 Sobic004G122900 Sobic009G194000--Sobic004G122900 Sobic001G308400 Sobic001G308400 Sobic009G194000--Sobic001G308400 Sobic003G190200 Sobic003G190200 Sobic009G194000--Sobic003G190200 Sobic009G194000--Sobic006G060000 Sobic001G141400 Sobic001G141400 Sobic009G194000--Sobic001G141400 Sobic006G060000--Sobic008G055500 Sobic006G060000--Sobic004G350700 Sobic007G172700 Sobic007G172700 Sobic006G060000--Sobic007G172700 Sobic001G114200 Sobic001G114200 Sobic006G060000--Sobic001G114200 Sobic003G394500 Sobic003G394500 Sobic006G060000--Sobic003G394500 Sobic001G389200 Sobic001G389200 Sobic006G060000--Sobic001G389200 Sobic004G263500 Sobic004G263500 Sobic006G060000--Sobic004G263500 Sobic006G060000--Sobic003G117800 Sobic006G060000--Sobic001G490900 Sobic003G402800--Sobic003G385300 Sobic003G402800--Sobic001G257800 Sobic003G402800--Sobic008G055500 Sobic002G074800 Sobic002G074800 Sobic003G402800--Sobic002G074800 Sobic005G048500 Sobic005G048500 Sobic003G402800--Sobic005G048500 Sobic005G185500 Sobic005G185500 Sobic003G402800--Sobic005G185500 Sobic004G064200 Sobic004G064200 Sobic003G402800--Sobic004G064200 Sobic009G046900 Sobic009G046900 Sobic003G402800--Sobic009G046900 Sobic001G149000 Sobic001G149000 Sobic003G402800--Sobic001G149000 Sobic002G398700 Sobic002G398700 Sobic010G091400--Sobic002G398700 Sobic003G218200 Sobic003G218200 Sobic010G091400--Sobic003G218200 Sobic010G091400--Sobic009G194000 Sobic010G091400--Sobic003G021600 Sobic008G037700 Sobic008G037700 Sobic010G091400--Sobic008G037700 Sobic003G297700 Sobic003G297700 Sobic010G091400--Sobic003G297700 Sobic002G252400 Sobic002G252400 Sobic010G091400--Sobic002G252400 Sobic002G356200 Sobic002G356200 Sobic010G091400--Sobic002G356200 Sobic010G091400--Sobic003G181700 Sobic003G409900 Sobic003G409900 Sobic001G532400--Sobic003G409900 Sobic001G532400--Sobic003G021600 Sobic003G114400 Sobic003G114400 Sobic001G532400--Sobic003G114400 Sobic001G205100 Sobic001G205100 Sobic001G532400--Sobic001G205100 Sobic001G188400 Sobic001G188400 Sobic001G532400--Sobic001G188400 Sobic003G365100 Sobic003G365100 Sobic001G532400--Sobic003G365100 Sobic001G532400--Sobic006G060000 Sobic001G532400--Sobic001G389200 Sobic001G532400--Sobic002G252400 Sobic002G057400--Sobic003G402800 Sobic002G304700 Sobic002G304700 Sobic002G057400--Sobic002G304700 Sobic005G225100 Sobic005G225100 Sobic002G057400--Sobic005G225100 Sobic002G057400--Sobic003G385300 Sobic010G160300 Sobic010G160300 Sobic002G057400--Sobic010G160300 Sobic002G057400--Sobic008G055500 Sobic002G007800 Sobic002G007800 Sobic002G057400--Sobic002G007800 Sobic005G063200 Sobic005G063200 Sobic002G057400--Sobic005G063200 Sobic002G057400--Sobic001G501900 Sobic003G036500 Sobic003G036500 Sobic003G436000--Sobic003G036500 Sobic003G436000--Sobic002G406300 Sobic003G039900 Sobic003G039900 Sobic003G436000--Sobic003G039900 Sobic003G436000--Sobic003G114400 Sobic003G436000--Sobic010G169900 Sobic003G159200 Sobic003G159200 Sobic003G436000--Sobic003G159200 Sobic003G436000--Sobic009G194000 Sobic006G203300 Sobic006G203300 Sobic003G436000--Sobic006G203300 Sobic003G436000--Sobic008G055500 Sobic001G501900--Sobic004G350700 Sobic001G501900--Sobic003G385300 Sobic001G501900--Sobic008G055500 Sobic001G501900--Sobic002G304700 Sobic001G501900--Sobic010G160300 Sobic004G077300 Sobic004G077300 Sobic001G501900--Sobic004G077300 Sobic001G424800 Sobic001G424800 Sobic001G501900--Sobic001G424800 Sobic001G501900--Sobic008G152700 Sobic001G501900--Sobic003G117800
Octagon: transcription factors


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