Gene annotation
Transcriptome id Sobic.005G168000.3,Sobic.005G168000.2,Sobic.005G168000.1,Sobic.005G168000.4
Synonym Sb05g022840
Functional annotation Rf1, mitochondrial precursor, putative, expressed
UniProt A0A1B6PT01 , A0A1Z5RJ07 , A0A1Z5RJ20 , A0A1Z5RJ37
Pfam PF01535 PF13041 PF13041
Panther DB PTHR24015 PTHR24015:SF874
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G62910 : Tetratricopeptide repeat (TPR)-like superfamily protein,Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os10g35240.1,LOC_Os10g35240.2 : Rf1, mitochondrial precursor, putative, expressed
MaizeGDB (Corn) Zm00025a015825 , Zm00025a015827 , Zm00025a015820
Brachypodium -
Barley HORVU1Hr1G011400.9 , HORVU1Hr1G011400.7 , HORVU1Hr1G011400.50 , HORVU1Hr1G011400.42 , HORVU1Hr1G011400.43 , HORVU1Hr1G011400.40 , HORVU1Hr1G011400.41 , HORVU1Hr1G011400.46 , HORVU1Hr1G011400.47 , HORVU1Hr1G011400.44 , HORVU1Hr1G011400.45 , HORVU1Hr1G011400.48 , HORVU1Hr1G011400.49 , HORVU1Hr1G011400.37 , HORVU1Hr1G011400.36 , HORVU1Hr1G011400.35 , HORVU1Hr1G011400.34 , HORVU1Hr1G011400.33 , HORVU1Hr1G011400.32 , HORVU1Hr1G011400.31 , HORVU1Hr1G011400.30 , HORVU1Hr1G011400.39 , HORVU1Hr1G011400.38 , HORVU1Hr1G011400.28 , HORVU1Hr1G011400.29 , HORVU1Hr1G011400.24 , HORVU1Hr1G011400.25 , HORVU1Hr1G011400.26 , HORVU1Hr1G011400.27 , HORVU1Hr1G011400.20 , HORVU1Hr1G011400.21 , HORVU1Hr1G011400.22 , HORVU1Hr1G011400.23 , HORVU1Hr1G011400.19 , HORVU1Hr1G011400.18 , HORVU1Hr1G011400.11 , HORVU1Hr1G011400.10 , HORVU1Hr1G011400.13 , HORVU1Hr1G011400.12 , HORVU1Hr1G011400.14 , HORVU1Hr1G011400.16 , HORVU1Hr1G011400.8 , HORVU1Hr1G011400.5 , HORVU1Hr1G011400.4 , HORVU1Hr1G011400.6 , HORVU1Hr1G011400.1 , HORVU1Hr1G011400.3 , HORVU1Hr1G011400.2 , HORVU1Hr1G011400.15 , HORVU1Hr1G011400.17
Wheat TraesCS1A02G056105
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G386600 heat shock protein DnaJ, putative, expressed -
2 Sobic.001G200200 tetratricopeptide repeat, putative, expressed -
3 Sobic.002G398700 tim44-like domain containing protein, expressed K17426: large subunit ribosomal protein L45
4 Sobic.004G356200 expressed protein -
5 Sobic.005G133800 NEF1, putative, expressed -
6 Sobic.010G081700 PPR repeat domain containing protein, putative, expressed -
7 Sobic.005G026400 pentatricopeptide repeat domain containing protein, putative, expressed -
8 Sobic.006G208400 expressed protein K14318: nuclear pore complex protein Nup88
9 Sobic.005G031000 FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed K00225: L-galactono-1,4-lactone dehydrogenase
10 Sobic.002G386900 pseudouridylate synthase, putative, expressed K06176: truD, tRNA pseudouridine13 synthase
11 Sobic.004G020100 division protein, putative, expressed -
12 Sobic.004G038100 expressed protein K14303: NUP160, nuclear pore complex protein Nup160
13 Sobic.006G193300 nucleolar complex protein, putative, expressed K14771: NOC4, U3 small nucleolar RNA-associated protein 19
14 Sobic.002G408900 adenyl cyclase, putative, expressed -
15 Sobic.004G354000 OsSigP1 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/His catalytic dyad, expressed -
16 Sobic.001G085800 WD domain, G-beta repeat domain containing protein, expressed K14406: cleavage stimulation factor subunit 1
17 Sobic.002G142700 PPR repeat containing protein, putative, expressed -
18 Sobic.002G371600 Spc97 / Spc98 family protein, putative, expressed K16572: TUBGCP5, gamma-tubulin complex component 5
19 Sobic.001G408600 RNA pseudouridine synthase, putative, expressed -
20 Sobic.005G115500 bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed K13998: dihydrofolate reductase / thymidylate synthase


Gene co-expression network
sample Sobic005G168000 Sobic005G168000 Sobic002G386600 Sobic002G386600 Sobic005G168000--Sobic002G386600 Sobic001G200200 Sobic001G200200 Sobic005G168000--Sobic001G200200 Sobic002G398700 Sobic002G398700 Sobic005G168000--Sobic002G398700 Sobic004G356200 Sobic004G356200 Sobic005G168000--Sobic004G356200 Sobic005G133800 Sobic005G133800 Sobic005G168000--Sobic005G133800 Sobic010G081700 Sobic010G081700 Sobic005G168000--Sobic010G081700 Sobic005G026400 Sobic005G026400 Sobic005G168000--Sobic005G026400 Sobic006G208400 Sobic006G208400 Sobic005G168000--Sobic006G208400 Sobic005G031000 Sobic005G031000 Sobic005G168000--Sobic005G031000 Sobic002G386900 Sobic002G386900 Sobic002G386600--Sobic002G386900 Sobic006G029100 Sobic006G029100 Sobic002G386600--Sobic006G029100 Sobic004G141800 Sobic004G141800 Sobic002G386600--Sobic004G141800 Sobic006G265600 Sobic006G265600 Sobic002G386600--Sobic006G265600 Sobic002G386600--Sobic002G398700 Sobic002G160700 Sobic002G160700 Sobic002G386600--Sobic002G160700 Sobic001G085800 Sobic001G085800 Sobic002G386600--Sobic001G085800 Sobic003G397900 Sobic003G397900 Sobic002G386600--Sobic003G397900 Sobic003G246000 Sobic003G246000 Sobic002G386600--Sobic003G246000 Sobic001G200200--Sobic004G356200 Sobic001G200200--Sobic005G031000 Sobic001G200200--Sobic002G386900 Sobic002G371600 Sobic002G371600 Sobic001G200200--Sobic002G371600 Sobic004G030400 Sobic004G030400 Sobic001G200200--Sobic004G030400 Sobic006G181800 Sobic006G181800 Sobic001G200200--Sobic006G181800 Sobic006G191200 Sobic006G191200 Sobic001G200200--Sobic006G191200 Sobic001G200200--Sobic006G029100 Sobic002G125800 Sobic002G125800 Sobic001G200200--Sobic002G125800 Sobic003G304400 Sobic003G304400 Sobic002G398700--Sobic003G304400 Sobic006G106300 Sobic006G106300 Sobic002G398700--Sobic006G106300 Sobic010G091400 Sobic010G091400 Sobic002G398700--Sobic010G091400 Sobic001G015400 Sobic001G015400 Sobic002G398700--Sobic001G015400 Sobic002G150700 Sobic002G150700 Sobic002G398700--Sobic002G150700 Sobic002G398700--Sobic005G026400 Sobic002G408900 Sobic002G408900 Sobic002G398700--Sobic002G408900 Sobic002G398700--Sobic002G386600 Sobic002G364900 Sobic002G364900 Sobic002G398700--Sobic002G364900 Sobic004G356200--Sobic001G200200 Sobic004G356200--Sobic002G371600 Sobic004G356200--Sobic005G031000 Sobic001G248100 Sobic001G248100 Sobic004G356200--Sobic001G248100 Sobic002G137601 Sobic002G137601 Sobic004G356200--Sobic002G137601 Sobic004G356200--Sobic002G160700 Sobic007G047600 Sobic007G047600 Sobic004G356200--Sobic007G047600 Sobic004G356200--Sobic004G030400 Sobic004G356200--Sobic001G085800 Sobic006G166200 Sobic006G166200 Sobic005G133800--Sobic006G166200 Sobic004G053500 Sobic004G053500 Sobic005G133800--Sobic004G053500 Sobic002G430300 Sobic002G430300 Sobic005G133800--Sobic002G430300 Sobic006G224800 Sobic006G224800 Sobic005G133800--Sobic006G224800 Sobic005G110499 Sobic005G110499 Sobic005G133800--Sobic005G110499 Sobic003G405500 Sobic003G405500 Sobic005G133800--Sobic003G405500 Sobic004G256500 Sobic004G256500 Sobic005G133800--Sobic004G256500 Sobic003G062300 Sobic003G062300 Sobic005G133800--Sobic003G062300 Sobic001G058200 Sobic001G058200 Sobic005G133800--Sobic001G058200 Sobic001G460500 Sobic001G460500 Sobic010G081700--Sobic001G460500 Sobic004G348600 Sobic004G348600 Sobic010G081700--Sobic004G348600 Sobic004G208500 Sobic004G208500 Sobic010G081700--Sobic004G208500 Sobic004G322300 Sobic004G322300 Sobic010G081700--Sobic004G322300 Sobic010G081700--Sobic002G398700 Sobic010G081700--Sobic006G106300 Sobic010G081700--Sobic002G408900 Sobic010G081700--Sobic004G356200 Sobic010G081700--Sobic002G150700 Sobic005G026400--Sobic002G398700 Sobic003G146600 Sobic003G146600 Sobic005G026400--Sobic003G146600 Sobic004G224600 Sobic004G224600 Sobic005G026400--Sobic004G224600 Sobic002G235200 Sobic002G235200 Sobic005G026400--Sobic002G235200 Sobic003G308500 Sobic003G308500 Sobic005G026400--Sobic003G308500 Sobic002G356200 Sobic002G356200 Sobic005G026400--Sobic002G356200 Sobic003G012000 Sobic003G012000 Sobic005G026400--Sobic003G012000 Sobic003G143800 Sobic003G143800 Sobic005G026400--Sobic003G143800 Sobic005G026400--Sobic001G015400 Sobic004G354000 Sobic004G354000 Sobic006G208400--Sobic004G354000 Sobic010G236600 Sobic010G236600 Sobic006G208400--Sobic010G236600 Sobic008G017100 Sobic008G017100 Sobic006G208400--Sobic008G017100 Sobic010G224700 Sobic010G224700 Sobic006G208400--Sobic010G224700 Sobic001G408300 Sobic001G408300 Sobic006G208400--Sobic001G408300 Sobic006G208400--Sobic001G460500 Sobic002G423400 Sobic002G423400 Sobic006G208400--Sobic002G423400 Sobic002G427300 Sobic002G427300 Sobic006G208400--Sobic002G427300 Sobic003G314700 Sobic003G314700 Sobic006G208400--Sobic003G314700 Sobic005G031000--Sobic004G356200 Sobic005G031000--Sobic001G200200 Sobic008G059900 Sobic008G059900 Sobic005G031000--Sobic008G059900 Sobic005G031000--Sobic002G125800 Sobic001G434700 Sobic001G434700 Sobic005G031000--Sobic001G434700 Sobic006G237000 Sobic006G237000 Sobic005G031000--Sobic006G237000 Sobic001G533100 Sobic001G533100 Sobic005G031000--Sobic001G533100 Sobic004G037200 Sobic004G037200 Sobic005G031000--Sobic004G037200 Sobic010G155600 Sobic010G155600 Sobic005G031000--Sobic010G155600
Octagon: transcription factors


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