Gene annotation
Transcriptome id Sobic.001G349700.1
Synonym Sb01g033470, RSL4
Functional annotation CPuORF35 - conserved peptide uORF-containing transcript, expressed
UniProt C5WXP2
Pfam -
Panther DB PTHR12565 PTHR12565:SF115
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G00120 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os03g27390.2 : CPuORF35 - conserved peptide uORF-containing transcript, expressed
MaizeGDB (Corn) Zm00025a002738 , Zm00025a052105
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G349650 - -
2 Sobic.002G374400 -(PubMedID : 23108465)@"DEP2(Ortholog in rice:Li et al., 2010)"(PubMedID : 31659864)@expressed protein -
3 Sobic.003G197100 beta-galactosidase, putative, expressed -
4 Sobic.002G161700 Myb-like DNA-binding domain containing protein, putative, expressed -
5 Sobic.002G214700 DNA repair metallo-beta-lactamase family protein, expressed K15340: DCLRE1A, SNM1A, DNA cross-link repair 1A protein
6 Sobic.007G166800 domain of unknown function DUF966 domain containing protein, expressed -
7 Sobic.003G231100 dnaJ domain containing protein, expressed -
8 Sobic.006G188800 H-BTB3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed -
9 Sobic.008G015200 NAP1, putative, expressed K05750: NCKAP1, NCK-associated protein 1
10 Sobic.002G039800 EDM2, putative, expressed -
11 Sobic.002G051800 BTBT2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with tetratricopeptide repeats, expressed -
12 Sobic.002G143200 kinesin motor domain containing protein, putative, expressed K10395: kinesin family member 4
13 Sobic.006G242500 CDT1B - Putative DNA replication initiation protein, expressed K10727: chromatin licensing and DNA replication factor 1
14 Sobic.004G307900 expressed protein K10875: RAD54L, DNA repair and recombination protein RAD54 and RAD54-like protein
15 Sobic.006G262400 phytosulfokine receptor precursor, putative, expressed -
16 Sobic.003G037000 AGC_AGC_other_NDRh_TRCd.1 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
17 Sobic.003G423600 expressed protein K06228: fused
18 Sobic.002G320600 HEAT repeat family protein, putative, expressed -
19 Sobic.009G049200 Spc97 / Spc98 family protein, putative, expressed K16571: TUBGCP4, gamma-tubulin complex component 4
20 Sobic.001G143600 pattern formation protein EMB30, putative, expressed K18443: golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1


Gene co-expression network
sample Sobic001G349700 Sobic001G349700 Sobic001G349650 Sobic001G349650 Sobic001G349700--Sobic001G349650 Sobic002G374400 Sobic002G374400 Sobic001G349700--Sobic002G374400 Sobic003G197100 Sobic003G197100 Sobic001G349700--Sobic003G197100 Sobic002G161700 Sobic002G161700 Sobic001G349700--Sobic002G161700 Sobic002G214700 Sobic002G214700 Sobic001G349700--Sobic002G214700 Sobic007G166800 Sobic007G166800 Sobic001G349700--Sobic007G166800 Sobic003G231100 Sobic003G231100 Sobic001G349700--Sobic003G231100 Sobic006G188800 Sobic006G188800 Sobic001G349700--Sobic006G188800 Sobic008G015200 Sobic008G015200 Sobic001G349700--Sobic008G015200 Sobic001G349650--Sobic001G349700 Sobic001G349650--Sobic003G197100 Sobic002G283500 Sobic002G283500 Sobic001G349650--Sobic002G283500 Sobic001G382700 Sobic001G382700 Sobic001G349650--Sobic001G382700 Sobic003G052100 Sobic003G052100 Sobic001G349650--Sobic003G052100 Sobic003G296500 Sobic003G296500 Sobic001G349650--Sobic003G296500 Sobic003G118100 Sobic003G118100 Sobic001G349650--Sobic003G118100 Sobic002G016400 Sobic002G016400 Sobic001G349650--Sobic002G016400 Sobic001G402400 Sobic001G402400 Sobic001G349650--Sobic001G402400 Sobic002G374400--Sobic008G015200 Sobic002G074000 Sobic002G074000 Sobic002G374400--Sobic002G074000 Sobic002G374400--Sobic003G197100 Sobic002G320600 Sobic002G320600 Sobic002G374400--Sobic002G320600 Sobic008G192700 Sobic008G192700 Sobic002G374400--Sobic008G192700 Sobic002G374400--Sobic001G349700 Sobic009G167100 Sobic009G167100 Sobic002G374400--Sobic009G167100 Sobic006G179300 Sobic006G179300 Sobic002G374400--Sobic006G179300 Sobic002G143200 Sobic002G143200 Sobic002G374400--Sobic002G143200 Sobic003G197100--Sobic002G374400 Sobic003G197100--Sobic002G320600 Sobic003G197100--Sobic001G349700 Sobic003G078300 Sobic003G078300 Sobic003G197100--Sobic003G078300 Sobic003G197100--Sobic001G349650 Sobic005G064100 Sobic005G064100 Sobic003G197100--Sobic005G064100 Sobic006G257200 Sobic006G257200 Sobic003G197100--Sobic006G257200 Sobic001G437500 Sobic001G437500 Sobic003G197100--Sobic001G437500 Sobic010G165100 Sobic010G165100 Sobic003G197100--Sobic010G165100 Sobic002G393200 Sobic002G393200 Sobic002G161700--Sobic002G393200 Sobic009G206500 Sobic009G206500 Sobic002G161700--Sobic009G206500 Sobic004G308100 Sobic004G308100 Sobic002G161700--Sobic004G308100 Sobic002G161700--Sobic007G166800 Sobic009G151700 Sobic009G151700 Sobic002G161700--Sobic009G151700 Sobic009G061000 Sobic009G061000 Sobic002G161700--Sobic009G061000 Sobic003G013000 Sobic003G013000 Sobic002G161700--Sobic003G013000 Sobic002G319200 Sobic002G319200 Sobic002G161700--Sobic002G319200 Sobic006G254500 Sobic006G254500 Sobic002G161700--Sobic006G254500 Sobic002G152900 Sobic002G152900 Sobic002G214700--Sobic002G152900 Sobic010G250800 Sobic010G250800 Sobic002G214700--Sobic010G250800 Sobic004G038100 Sobic004G038100 Sobic002G214700--Sobic004G038100 Sobic002G214700--Sobic003G231100 Sobic003G369200 Sobic003G369200 Sobic002G214700--Sobic003G369200 Sobic004G129600 Sobic004G129600 Sobic002G214700--Sobic004G129600 Sobic003G393100 Sobic003G393100 Sobic002G214700--Sobic003G393100 Sobic003G274400 Sobic003G274400 Sobic002G214700--Sobic003G274400 Sobic007G006800 Sobic007G006800 Sobic002G214700--Sobic007G006800 Sobic001G487200 Sobic001G487200 Sobic007G166800--Sobic001G487200 Sobic010G129700 Sobic010G129700 Sobic007G166800--Sobic010G129700 Sobic007G166800--Sobic006G254500 Sobic001G285200 Sobic001G285200 Sobic007G166800--Sobic001G285200 Sobic006G218900 Sobic006G218900 Sobic007G166800--Sobic006G218900 Sobic005G021900 Sobic005G021900 Sobic007G166800--Sobic005G021900 Sobic001G231200 Sobic001G231200 Sobic007G166800--Sobic001G231200 Sobic004G315700 Sobic004G315700 Sobic007G166800--Sobic004G315700 Sobic001G540700 Sobic001G540700 Sobic007G166800--Sobic001G540700 Sobic003G250900 Sobic003G250900 Sobic003G231100--Sobic003G250900 Sobic003G231100--Sobic002G320600 Sobic003G231100--Sobic002G214700 Sobic003G231100--Sobic003G369200 Sobic003G231100--Sobic003G393100 Sobic003G231100--Sobic008G015200 Sobic003G231100--Sobic008G192700 Sobic009G190200 Sobic009G190200 Sobic003G231100--Sobic009G190200 Sobic003G231100--Sobic004G129600 Sobic003G307200 Sobic003G307200 Sobic006G188800--Sobic003G307200 Sobic001G143600 Sobic001G143600 Sobic006G188800--Sobic001G143600 Sobic003G311500 Sobic003G311500 Sobic006G188800--Sobic003G311500 Sobic002G360500 Sobic002G360500 Sobic006G188800--Sobic002G360500 Sobic004G004600 Sobic004G004600 Sobic006G188800--Sobic004G004600 Sobic006G242500 Sobic006G242500 Sobic006G188800--Sobic006G242500 Sobic006G188800--Sobic002G074000 Sobic006G188800--Sobic001G231200 Sobic002G338700 Sobic002G338700 Sobic006G188800--Sobic002G338700 Sobic001G385400 Sobic001G385400 Sobic008G015200--Sobic001G385400 Sobic008G015200--Sobic008G192700 Sobic008G015200--Sobic002G374400 Sobic008G015200--Sobic002G074000 Sobic009G052100 Sobic009G052100 Sobic008G015200--Sobic009G052100 Sobic008G015200--Sobic009G167100 Sobic008G015200--Sobic006G179300 Sobic008G015200--Sobic002G143200 Sobic009G049200 Sobic009G049200 Sobic008G015200--Sobic009G049200
Octagon: transcription factors


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