Gene annotation
Transcriptome id Sobic.006G170400.1
Synonym Sb06g024570
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
expressed protein
UniProt A0A1B6PMF1
Pfam -
Panther DB PTHR33625 PTHR33625:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G25170 : Uncharacterised conserved protein (UCP012943)
RAP-DB (Rice) LOC_Os04g46480.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium KQJ83935
Barley HORVU2Hr1G097760.1 , HORVU2Hr1G097760.3 , HORVU2Hr1G097760.2 , HORVU2Hr1G097760.5 , HORVU2Hr1G097760.4 , HORVU2Hr1G097760.6 , HORVU0Hr1G006440.1 , HORVU0Hr1G006440.2 , HORVU2Hr1G107530.1
Wheat TraesCS2B02G433700 , TraesCS2D02G411800 , TraesCS2A02G414500
Populus -


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cDNA sequences
Sobic.006G170400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G066600 DNA-binding protein S1FA, putative, expressed -
2 Sobic.002G419500 HAD superfamily phosphatase, putative, expressed -
3 Sobic.002G260800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
4 Sobic.001G191800 harpin-induced protein 1 domain containing protein, expressed -
5 Sobic.004G067900 expressed protein -
6 Sobic.001G106400 serine esterase family protein, putative, expressed K10606: FANCL, E3 ubiquitin-protein ligase FANCL
7 Sobic.002G308400 "MYB transcription factor(Ortholog in rice:Huang et al., 2012)"(PubMedID : 31659858)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
8 Sobic.006G096300 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
9 Sobic.002G290500 armadillo/beta-catenin repeat protein-related, putative, expressed -
10 Sobic.007G194100 nucleotide pyrophosphatase/phosphodiesterase, putative, expressed -
11 Sobic.004G225800 GEM, putative, expressed -
12 Sobic.009G149800 subtilisin N-terminal Region family protein, expressed -
13 Sobic.009G170800 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
14 Sobic.007G034600 U box protein 8, putative, expressed -
15 Sobic.001G488200 aminotransferase, putative, expressed K00827: alanine-glyoxylate transaminase / (R)-3-amino-2-methylpropionate-pyruvate transaminase
16 Sobic.002G393600 GDSL-like lipase/acylhydrolase, putative, expressed -
17 Sobic.004G085700 expressed protein -
18 Sobic.006G239300 thiamine-repressible mitochondrial transport protein THI74, putative, expressed K15289: solute carrier family 35, member F5
19 Sobic.010G198800 expressed protein -
20 Sobic.001G359700 expressed protein -


Gene co-expression network
sample Sobic006G170400 Sobic006G170400 Sobic006G066600 Sobic006G066600 Sobic006G170400--Sobic006G066600 Sobic002G419500 Sobic002G419500 Sobic006G170400--Sobic002G419500 Sobic002G260800 Sobic002G260800 Sobic006G170400--Sobic002G260800 Sobic001G191800 Sobic001G191800 Sobic006G170400--Sobic001G191800 Sobic004G067900 Sobic004G067900 Sobic006G170400--Sobic004G067900 Sobic001G106400 Sobic001G106400 Sobic006G170400--Sobic001G106400 Sobic002G308400 Sobic002G308400 Sobic006G170400--Sobic002G308400 Sobic006G096300 Sobic006G096300 Sobic006G170400--Sobic006G096300 Sobic002G290500 Sobic002G290500 Sobic006G170400--Sobic002G290500 Sobic004G318400 Sobic004G318400 Sobic006G066600--Sobic004G318400 Sobic006G066600--Sobic004G067900 Sobic004G102900 Sobic004G102900 Sobic006G066600--Sobic004G102900 Sobic006G244500 Sobic006G244500 Sobic006G066600--Sobic006G244500 Sobic007G018000 Sobic007G018000 Sobic006G066600--Sobic007G018000 Sobic004G028800 Sobic004G028800 Sobic006G066600--Sobic004G028800 Sobic001G488200 Sobic001G488200 Sobic006G066600--Sobic001G488200 Sobic004G155300 Sobic004G155300 Sobic006G066600--Sobic004G155300 Sobic006G066600--Sobic002G308400 Sobic002G419500--Sobic002G290500 Sobic004G225800 Sobic004G225800 Sobic002G419500--Sobic004G225800 Sobic007G074200 Sobic007G074200 Sobic002G419500--Sobic007G074200 Sobic009G170800 Sobic009G170800 Sobic002G419500--Sobic009G170800 Sobic002G419500--Sobic004G102900 Sobic002G419500--Sobic006G066600 Sobic002G419500--Sobic004G067900 Sobic004G056201 Sobic004G056201 Sobic002G419500--Sobic004G056201 Sobic002G419500--Sobic002G308400 Sobic003G437300 Sobic003G437300 Sobic002G260800--Sobic003G437300 Sobic002G046600 Sobic002G046600 Sobic002G260800--Sobic002G046600 Sobic002G260800--Sobic001G488200 Sobic002G240800 Sobic002G240800 Sobic002G260800--Sobic002G240800 Sobic002G260800--Sobic006G244500 Sobic002G260800--Sobic004G067900 Sobic002G260800--Sobic006G170400 Sobic003G002501 Sobic003G002501 Sobic002G260800--Sobic003G002501 Sobic002G260800--Sobic004G225800 Sobic001G161000 Sobic001G161000 Sobic001G191800--Sobic001G161000 Sobic001G191800--Sobic002G290500 Sobic004G085700 Sobic004G085700 Sobic001G191800--Sobic004G085700 Sobic001G013800 Sobic001G013800 Sobic001G191800--Sobic001G013800 Sobic001G191800--Sobic002G419500 Sobic001G191800--Sobic001G106400 Sobic001G191800--Sobic006G170400 Sobic001G191800--Sobic009G170800 Sobic001G101200 Sobic001G101200 Sobic001G191800--Sobic001G101200 Sobic004G067900--Sobic002G308400 Sobic004G067900--Sobic006G244500 Sobic007G194100 Sobic007G194100 Sobic004G067900--Sobic007G194100 Sobic003G062200 Sobic003G062200 Sobic004G067900--Sobic003G062200 Sobic003G295000 Sobic003G295000 Sobic004G067900--Sobic003G295000 Sobic004G067900--Sobic006G066600 Sobic004G067900--Sobic002G240800 Sobic007G034600 Sobic007G034600 Sobic004G067900--Sobic007G034600 Sobic004G067900--Sobic001G106400 Sobic001G106400--Sobic004G067900 Sobic001G106400--Sobic002G308400 Sobic001G106400--Sobic006G096300 Sobic001G106400--Sobic006G066600 Sobic002G393600 Sobic002G393600 Sobic001G106400--Sobic002G393600 Sobic010G168200 Sobic010G168200 Sobic001G106400--Sobic010G168200 Sobic009G232800 Sobic009G232800 Sobic001G106400--Sobic009G232800 Sobic001G106400--Sobic004G102900 Sobic009G070200 Sobic009G070200 Sobic001G106400--Sobic009G070200 Sobic002G308400--Sobic004G067900 Sobic002G308400--Sobic007G194100 Sobic002G308400--Sobic006G244500 Sobic002G308400--Sobic001G106400 Sobic002G308400--Sobic003G295000 Sobic002G240700 Sobic002G240700 Sobic002G308400--Sobic002G240700 Sobic010G037200 Sobic010G037200 Sobic002G308400--Sobic010G037200 Sobic001G442200 Sobic001G442200 Sobic002G308400--Sobic001G442200 Sobic002G308400--Sobic006G066600 Sobic006G096300--Sobic007G034600 Sobic006G096300--Sobic004G067900 Sobic006G096300--Sobic001G106400 Sobic002G359900 Sobic002G359900 Sobic006G096300--Sobic002G359900 Sobic006G096300--Sobic004G102900 Sobic006G096300--Sobic001G488200 Sobic006G096300--Sobic004G028800 Sobic003G031200 Sobic003G031200 Sobic006G096300--Sobic003G031200 Sobic004G250900 Sobic004G250900 Sobic006G096300--Sobic004G250900 Sobic004G117600 Sobic004G117600 Sobic002G290500--Sobic004G117600 Sobic002G290500--Sobic002G419500 Sobic008G111500 Sobic008G111500 Sobic002G290500--Sobic008G111500 Sobic008G082200 Sobic008G082200 Sobic002G290500--Sobic008G082200 Sobic002G338250 Sobic002G338250 Sobic002G290500--Sobic002G338250 Sobic001G365100 Sobic001G365100 Sobic002G290500--Sobic001G365100 Sobic010G259500 Sobic010G259500 Sobic002G290500--Sobic010G259500 Sobic003G191500 Sobic003G191500 Sobic002G290500--Sobic003G191500 Sobic001G447100 Sobic001G447100 Sobic002G290500--Sobic001G447100
Octagon: transcription factors


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