Gene annotation
Transcriptome id Sobic.002G236900.1
Synonym
Functional annotation -
UniProt C5X341
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G046600 CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8
2 Sobic.001G191800 harpin-induced protein 1 domain containing protein, expressed -
3 Sobic.004G102900 FUWA(Ortholog in rice:Chen 2015)(PubMedID : 31659879)@"encodes an NHL domain-containing protein regulating panicle architecture, grain shape and grain weight"(PubMedID : 26043067)@NHL repeat-containing protein, putative, expressed -
4 Sobic.002G419500 HAD superfamily phosphatase, putative, expressed -
5 Sobic.009G170800 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
6 Sobic.002G401566 - -
7 Sobic.004G318400 MTD1, putative, expressed -
8 Sobic.002G308400 "MYB transcription factor(Ortholog in rice:Huang et al., 2012)"(PubMedID : 31659858)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
9 Sobic.007G194100 nucleotide pyrophosphatase/phosphodiesterase, putative, expressed -
10 Sobic.002G260800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
11 Sobic.006G066600 DNA-binding protein S1FA, putative, expressed -
12 Sobic.007G034600 U box protein 8, putative, expressed -
13 Sobic.009G025100 transporter, putative, expressed -
14 Sobic.003G304500 expressed protein -
15 Sobic.010G037200 SAM dependent carboxyl methyltransferase, putative, expressed -
16 Sobic.006G072400 DUF584 domain containing protein, putative, expressed -
17 Sobic.002G325100 expressed protein -
18 Sobic.004G250900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@aldehyde dehydrogenase, putative, expressed K00128: aldehyde dehydrogenase (NAD+)
19 Sobic.007G097700 DUF593 domain containing protein, expressed -
20 Sobic.001G154400 expp1 protein precursor, putative, expressed -


Gene co-expression network
sample Sobic002G236900 Sobic002G236900 Sobic002G046600 Sobic002G046600 Sobic002G236900--Sobic002G046600 Sobic001G191800 Sobic001G191800 Sobic002G236900--Sobic001G191800 Sobic004G102900 Sobic004G102900 Sobic002G236900--Sobic004G102900 Sobic002G419500 Sobic002G419500 Sobic002G236900--Sobic002G419500 Sobic009G170800 Sobic009G170800 Sobic002G236900--Sobic009G170800 Sobic002G401566 Sobic002G401566 Sobic002G236900--Sobic002G401566 Sobic004G318400 Sobic004G318400 Sobic002G236900--Sobic004G318400 Sobic002G308400 Sobic002G308400 Sobic002G236900--Sobic002G308400 Sobic007G194100 Sobic007G194100 Sobic002G236900--Sobic007G194100 Sobic002G046600--Sobic002G236900 Sobic002G260800 Sobic002G260800 Sobic002G046600--Sobic002G260800 Sobic006G244500 Sobic006G244500 Sobic002G046600--Sobic006G244500 Sobic001G488200 Sobic001G488200 Sobic002G046600--Sobic001G488200 Sobic003G062200 Sobic003G062200 Sobic002G046600--Sobic003G062200 Sobic009G009800 Sobic009G009800 Sobic002G046600--Sobic009G009800 Sobic002G046600--Sobic002G401566 Sobic008G037000 Sobic008G037000 Sobic002G046600--Sobic008G037000 Sobic003G002501 Sobic003G002501 Sobic002G046600--Sobic003G002501 Sobic001G161000 Sobic001G161000 Sobic001G191800--Sobic001G161000 Sobic002G290500 Sobic002G290500 Sobic001G191800--Sobic002G290500 Sobic004G085700 Sobic004G085700 Sobic001G191800--Sobic004G085700 Sobic001G013800 Sobic001G013800 Sobic001G191800--Sobic001G013800 Sobic001G191800--Sobic002G419500 Sobic001G106400 Sobic001G106400 Sobic001G191800--Sobic001G106400 Sobic006G170400 Sobic006G170400 Sobic001G191800--Sobic006G170400 Sobic001G191800--Sobic009G170800 Sobic001G101200 Sobic001G101200 Sobic001G191800--Sobic001G101200 Sobic004G102900--Sobic004G318400 Sobic007G208200 Sobic007G208200 Sobic004G102900--Sobic007G208200 Sobic001G050900 Sobic001G050900 Sobic004G102900--Sobic001G050900 Sobic001G154400 Sobic001G154400 Sobic004G102900--Sobic001G154400 Sobic006G066600 Sobic006G066600 Sobic004G102900--Sobic006G066600 Sobic002G240700 Sobic002G240700 Sobic004G102900--Sobic002G240700 Sobic003G304500 Sobic003G304500 Sobic004G102900--Sobic003G304500 Sobic004G102900--Sobic007G194100 Sobic002G113500 Sobic002G113500 Sobic004G102900--Sobic002G113500 Sobic002G419500--Sobic002G290500 Sobic004G225800 Sobic004G225800 Sobic002G419500--Sobic004G225800 Sobic007G074200 Sobic007G074200 Sobic002G419500--Sobic007G074200 Sobic002G419500--Sobic009G170800 Sobic002G419500--Sobic004G102900 Sobic002G419500--Sobic006G066600 Sobic004G067900 Sobic004G067900 Sobic002G419500--Sobic004G067900 Sobic004G056201 Sobic004G056201 Sobic002G419500--Sobic004G056201 Sobic002G419500--Sobic002G308400 Sobic009G170800--Sobic004G067900 Sobic009G216800 Sobic009G216800 Sobic009G170800--Sobic009G216800 Sobic009G170800--Sobic002G308400 Sobic010G196800 Sobic010G196800 Sobic009G170800--Sobic010G196800 Sobic009G170800--Sobic002G419500 Sobic009G170800--Sobic004G318400 Sobic009G170800--Sobic006G066600 Sobic009G170800--Sobic001G106400 Sobic009G170800--Sobic004G102900 Sobic002G401566--Sobic002G046600 Sobic002G325100 Sobic002G325100 Sobic002G401566--Sobic002G325100 Sobic002G401566--Sobic008G037000 Sobic002G401566--Sobic001G488200 Sobic002G401566--Sobic003G062200 Sobic006G151001 Sobic006G151001 Sobic002G401566--Sobic006G151001 Sobic002G401566--Sobic002G236900 Sobic007G097700 Sobic007G097700 Sobic002G401566--Sobic007G097700 Sobic002G401566--Sobic002G260800 Sobic004G318400--Sobic004G102900 Sobic004G318400--Sobic007G208200 Sobic004G318400--Sobic003G304500 Sobic004G274500 Sobic004G274500 Sobic004G318400--Sobic004G274500 Sobic004G318400--Sobic006G066600 Sobic004G196800 Sobic004G196800 Sobic004G318400--Sobic004G196800 Sobic009G025100 Sobic009G025100 Sobic004G318400--Sobic009G025100 Sobic004G155300 Sobic004G155300 Sobic004G318400--Sobic004G155300 Sobic004G318400--Sobic007G194100 Sobic002G308400--Sobic004G067900 Sobic002G308400--Sobic007G194100 Sobic002G308400--Sobic006G244500 Sobic002G308400--Sobic001G106400 Sobic003G295000 Sobic003G295000 Sobic002G308400--Sobic003G295000 Sobic002G308400--Sobic002G240700 Sobic010G037200 Sobic010G037200 Sobic002G308400--Sobic010G037200 Sobic001G442200 Sobic001G442200 Sobic002G308400--Sobic001G442200 Sobic002G308400--Sobic006G066600 Sobic007G194100--Sobic002G240700 Sobic007G194100--Sobic010G037200 Sobic009G199300 Sobic009G199300 Sobic007G194100--Sobic009G199300 Sobic007G194100--Sobic002G308400 Sobic005G098700 Sobic005G098700 Sobic007G194100--Sobic005G098700 Sobic007G194100--Sobic009G025100 Sobic007G194100--Sobic004G067900 Sobic007G194100--Sobic007G208200 Sobic007G194100--Sobic001G442200
Octagon: transcription factors


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