Gene annotation
Transcriptome id Sobic.001G130400.1
Synonym Sb01g011440
Functional annotation expressed protein
UniProt C5WPH2
Pfam PF04398
Panther DB PTHR31676 PTHR31676:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G55265 : Protein of unknown function, DUF538
RAP-DB (Rice) LOC_Os03g48626.2 : expressed protein
MaizeGDB (Corn) Zm00025a017083 , Zm00025a007670
Brachypodium KQK13709
Barley HORVU4Hr1G005310.1 , HORVU4Hr1G005310.2
Wheat TraesCS4A02G280600 , TraesCS4B02G032200 , TraesCS4D02G029900 , TraesCS3B02G283700
Populus -


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cDNA sequences
Sobic.001G130400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G063500 protein transport protein SEC61 subunit gamma, putative, expressed K07342: SEC61G, SSS1, protein transport protein SEC61 subunit gamma and related proteins
2 Sobic.009G120100 OsSigP5 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/His catalytic dyad, expressed K13280: SEC11, signal peptidase I
3 Sobic.004G137900 wiskott-Aldrich syndrome protein family member 2, putative, expressed -
4 Sobic.001G066700 GLTP domain containing protein, putative, expressed -
5 Sobic.003G358300 josephin, putative, expressed K11863: ATXN3, Ataxin-3
6 Sobic.005G111100 SKP1-like protein 1B, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
7 Sobic.009G070200 Der1-like family domain containing protein, expressed K13989: Derlin-2/3
8 Sobic.003G325700 expressed protein -
9 Sobic.001G434400 ufm1-conjugating enzyme 1, putative, expressed K12165: ufm1-conjugating enzyme 1
10 Sobic.003G024500 expressed protein -
11 Sobic.003G403400 zinc finger, C3HC4 type domain containing protein, expressed -
12 Sobic.004G325200 60S ribosome subunit biogenesis protein NIP7, putative, expressed K07565: 60S ribosome subunit biogenesis protein NIP7
13 Sobic.005G206700 WD domain, G-beta repeat domain containing protein, expressed K12602: WDR61, REC14, WD repeat-containing protein 61
14 Sobic.001G441000 erwinia induced protein 2, putative, expressed -
15 Sobic.010G180700 protein phosphatase 2C, putative, expressed K14803: protein phosphatase PTC2/3
16 Sobic.003G063200 uncharacterized Cys-rich domain containing protein, putative, expressed -
17 Sobic.007G091000 thioredoxin domain-containing protein 9, putative, expressed -
18 Sobic.002G386300 exosome complex exonuclease, putative, expressed K12587: MTR3, exosome complex component MTR3
19 Sobic.001G128400 peptidase, T1 family, putative, expressed K02734: 20S proteasome subunit beta 4
20 Sobic.004G032000 peptidase, T1 family, putative, expressed K02725: 20S proteasome subunit alpha 6


Gene co-expression network
sample Sobic001G130400 Sobic001G130400 Sobic004G063500 Sobic004G063500 Sobic001G130400--Sobic004G063500 Sobic009G120100 Sobic009G120100 Sobic001G130400--Sobic009G120100 Sobic004G137900 Sobic004G137900 Sobic001G130400--Sobic004G137900 Sobic001G066700 Sobic001G066700 Sobic001G130400--Sobic001G066700 Sobic003G358300 Sobic003G358300 Sobic001G130400--Sobic003G358300 Sobic005G111100 Sobic005G111100 Sobic001G130400--Sobic005G111100 Sobic009G070200 Sobic009G070200 Sobic001G130400--Sobic009G070200 Sobic003G325700 Sobic003G325700 Sobic001G130400--Sobic003G325700 Sobic001G434400 Sobic001G434400 Sobic001G130400--Sobic001G434400 Sobic004G063500--Sobic009G120100 Sobic004G063500--Sobic003G325700 Sobic003G063200 Sobic003G063200 Sobic004G063500--Sobic003G063200 Sobic004G063500--Sobic001G066700 Sobic010G266300 Sobic010G266300 Sobic004G063500--Sobic010G266300 Sobic009G216800 Sobic009G216800 Sobic004G063500--Sobic009G216800 Sobic003G403400 Sobic003G403400 Sobic004G063500--Sobic003G403400 Sobic002G113500 Sobic002G113500 Sobic004G063500--Sobic002G113500 Sobic006G231700 Sobic006G231700 Sobic004G063500--Sobic006G231700 Sobic009G120100--Sobic004G063500 Sobic007G152400 Sobic007G152400 Sobic009G120100--Sobic007G152400 Sobic001G286300 Sobic001G286300 Sobic009G120100--Sobic001G286300 Sobic006G095200 Sobic006G095200 Sobic009G120100--Sobic006G095200 Sobic002G331300 Sobic002G331300 Sobic009G120100--Sobic002G331300 Sobic009G120100--Sobic009G070200 Sobic003G233500 Sobic003G233500 Sobic009G120100--Sobic003G233500 Sobic009G120100--Sobic005G111100 Sobic007G029400 Sobic007G029400 Sobic009G120100--Sobic007G029400 Sobic004G012800 Sobic004G012800 Sobic004G137900--Sobic004G012800 Sobic004G137900--Sobic006G231700 Sobic004G137900--Sobic003G358300 Sobic006G013900 Sobic006G013900 Sobic004G137900--Sobic006G013900 Sobic004G137900--Sobic002G331300 Sobic004G137900--Sobic001G286300 Sobic004G137900--Sobic009G120100 Sobic003G129800 Sobic003G129800 Sobic004G137900--Sobic003G129800 Sobic004G137900--Sobic005G111100 Sobic001G066700--Sobic003G358300 Sobic001G066700--Sobic003G403400 Sobic002G218000 Sobic002G218000 Sobic001G066700--Sobic002G218000 Sobic001G066700--Sobic005G111100 Sobic009G191600 Sobic009G191600 Sobic001G066700--Sobic009G191600 Sobic001G066700--Sobic010G266300 Sobic001G066700--Sobic003G233500 Sobic010G225300 Sobic010G225300 Sobic001G066700--Sobic010G225300 Sobic001G066700--Sobic009G070200 Sobic003G358300--Sobic001G066700 Sobic003G358300--Sobic006G231700 Sobic003G358300--Sobic005G111100 Sobic002G044000 Sobic002G044000 Sobic003G358300--Sobic002G044000 Sobic004G032000 Sobic004G032000 Sobic003G358300--Sobic004G032000 Sobic004G166500 Sobic004G166500 Sobic003G358300--Sobic004G166500 Sobic002G386300 Sobic002G386300 Sobic003G358300--Sobic002G386300 Sobic007G163700 Sobic007G163700 Sobic003G358300--Sobic007G163700 Sobic009G191200 Sobic009G191200 Sobic003G358300--Sobic009G191200 Sobic001G128400 Sobic001G128400 Sobic005G111100--Sobic001G128400 Sobic005G111100--Sobic003G129800 Sobic005G111100--Sobic004G032000 Sobic004G066800 Sobic004G066800 Sobic005G111100--Sobic004G066800 Sobic003G280700 Sobic003G280700 Sobic005G111100--Sobic003G280700 Sobic005G111100--Sobic007G152400 Sobic010G054200 Sobic010G054200 Sobic005G111100--Sobic010G054200 Sobic005G111100--Sobic006G231700 Sobic005G111100--Sobic002G218000 Sobic009G070200--Sobic010G266300 Sobic009G070200--Sobic001G066700 Sobic009G070200--Sobic002G044000 Sobic008G134900 Sobic008G134900 Sobic009G070200--Sobic008G134900 Sobic002G261900 Sobic002G261900 Sobic009G070200--Sobic002G261900 Sobic009G070200--Sobic003G358300 Sobic009G070200--Sobic009G120100 Sobic003G043400 Sobic003G043400 Sobic009G070200--Sobic003G043400 Sobic009G070200--Sobic007G152400 Sobic003G325700--Sobic004G063500 Sobic003G146400 Sobic003G146400 Sobic003G325700--Sobic003G146400 Sobic010G196800 Sobic010G196800 Sobic003G325700--Sobic010G196800 Sobic003G325700--Sobic002G113500 Sobic003G325700--Sobic003G063200 Sobic006G158200 Sobic006G158200 Sobic003G325700--Sobic006G158200 Sobic008G111500 Sobic008G111500 Sobic003G325700--Sobic008G111500 Sobic004G247200 Sobic004G247200 Sobic003G325700--Sobic004G247200 Sobic009G131400 Sobic009G131400 Sobic003G325700--Sobic009G131400 Sobic006G276200 Sobic006G276200 Sobic001G434400--Sobic006G276200 Sobic010G088300 Sobic010G088300 Sobic001G434400--Sobic010G088300 Sobic001G434400--Sobic004G012800 Sobic006G231500 Sobic006G231500 Sobic001G434400--Sobic006G231500 Sobic004G242100 Sobic004G242100 Sobic001G434400--Sobic004G242100 Sobic001G434400--Sobic004G137900 Sobic006G109700 Sobic006G109700 Sobic001G434400--Sobic006G109700 Sobic001G434400--Sobic001G130400 Sobic005G110526 Sobic005G110526 Sobic001G434400--Sobic005G110526
Octagon: transcription factors


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