Gene annotation
Transcriptome id Sobic.004G142400.1
Synonym Sb04g017780
Functional annotation ATP-binding region, ATPase-like domain containing protein, expressed
UniProt A0A194YPR0
Pfam PF13589
Panther DB PTHR23336 PTHR23336:SF21
NCBI CDD KOG1845; MORC family ATPases
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G24970 : Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein
RAP-DB (Rice) LOC_Os02g27000.1 : ATP-binding region, ATPase-like domain containing protein, expressed
MaizeGDB (Corn) Zm00025a034291 , Zm00025a027190
Brachypodium KQJ99446 , KQJ99442 , KQJ99443 , PNT68611
Barley -
Wheat TraesCS2A02G273000 , TraesCS2B02G291200 , TraesCS2B02G291200 , TraesCS2D02G272300 , TraesCS2D02G272300 , TraesCS2A02G273000 , TraesCS2D02G272300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G160400 ZF-HD homeobox protein, putative, expressed -
2 Sobic.006G083900 PHD-finger domain containing protein, expressed -
3 Sobic.005G126701 - -
4 Sobic.003G434300 expressed protein -
5 Sobic.008G018100 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
6 Sobic.010G110100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@"A transcription factor(Ortholog in rice:Huang et al., 2012)"(PubMedID : 31659933)@transcription factor, putative, expressed K14431: transcription factor TGA
7 Sobic.006G234433 - -
8 Sobic.007G008500 basic helix-loop-helix family protein, putative, expressed -
9 Sobic.004G091600 ethylene receptor, putative, expressed K14509: ETR, ethylene receptor
10 Sobic.004G349550 - K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
11 Sobic.003G086800 ZOS1-02 - C2H2 zinc finger protein, expressed -
12 Sobic.003G061500 small hydrophilic plant seed protein, putative, expressed -
13 Sobic.001G166900 B3 DNA binding domain containing protein, expressed -
14 Sobic.001G534200 - -
15 Sobic.008G149300 B3 DNA binding domain containing protein, expressed -
16 Sobic.001G344300 - -
17 Sobic.002G046000 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
18 Sobic.006G095900 OsSCP60 - Putative Serine Carboxypeptidase homologue, expressed K16296: serine carboxypeptidase-like clade I
19 Sobic.005G184700 - -
20 Sobic.009G103800 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@ABA signaling component(PubMedID : 24151305)@AP2 domain containing protein, expressed K09286: EREBP-like factor


Gene co-expression network
sample Sobic004G142400 Sobic004G142400 Sobic007G160400 Sobic007G160400 Sobic004G142400--Sobic007G160400 Sobic006G083900 Sobic006G083900 Sobic004G142400--Sobic006G083900 Sobic005G126701 Sobic005G126701 Sobic004G142400--Sobic005G126701 Sobic003G434300 Sobic003G434300 Sobic004G142400--Sobic003G434300 Sobic008G018100 Sobic008G018100 Sobic004G142400--Sobic008G018100 Sobic010G110100 Sobic010G110100 Sobic004G142400--Sobic010G110100 Sobic006G234433 Sobic006G234433 Sobic004G142400--Sobic006G234433 Sobic007G008500 Sobic007G008500 Sobic004G142400--Sobic007G008500 Sobic004G091600 Sobic004G091600 Sobic004G142400--Sobic004G091600 Sobic007G160400--Sobic004G142400 Sobic006G226000 Sobic006G226000 Sobic007G160400--Sobic006G226000 Sobic007G160400--Sobic005G126701 Sobic007G160400--Sobic006G083900 Sobic007G160400--Sobic007G008500 Sobic003G086800 Sobic003G086800 Sobic007G160400--Sobic003G086800 Sobic009G012500 Sobic009G012500 Sobic007G160400--Sobic009G012500 Sobic009G031800 Sobic009G031800 Sobic007G160400--Sobic009G031800 Sobic007G160400--Sobic010G110100 Sobic006G083900--Sobic006G234433 Sobic008G149300 Sobic008G149300 Sobic006G083900--Sobic008G149300 Sobic004G349550 Sobic004G349550 Sobic006G083900--Sobic004G349550 Sobic010G053400 Sobic010G053400 Sobic006G083900--Sobic010G053400 Sobic001G122600 Sobic001G122600 Sobic006G083900--Sobic001G122600 Sobic001G254800 Sobic001G254800 Sobic005G126701--Sobic001G254800 Sobic005G126701--Sobic006G083900 Sobic007G025600 Sobic007G025600 Sobic005G126701--Sobic007G025600 Sobic001G534200 Sobic001G534200 Sobic005G126701--Sobic001G534200 Sobic005G126701--Sobic006G234433 Sobic009G103800 Sobic009G103800 Sobic005G126701--Sobic009G103800 Sobic001G166900 Sobic001G166900 Sobic005G126701--Sobic001G166900 Sobic005G126701--Sobic004G349550 Sobic006G167700 Sobic006G167700 Sobic005G126701--Sobic006G167700 Sobic003G434300--Sobic006G234433 Sobic003G434300--Sobic006G083900 Sobic003G434300--Sobic001G122600 Sobic008G018100--Sobic006G083900 Sobic008G018100--Sobic006G234433 Sobic008G018100--Sobic008G149300 Sobic008G018100--Sobic007G025600 Sobic008G018100--Sobic004G349550 Sobic008G018100--Sobic005G126701 Sobic008G018100--Sobic001G122600 Sobic010G110100--Sobic004G349550 Sobic010G110100--Sobic007G008500 Sobic002G046000 Sobic002G046000 Sobic010G110100--Sobic002G046000 Sobic010G110100--Sobic009G103800 Sobic001G344300 Sobic001G344300 Sobic010G110100--Sobic001G344300 Sobic002G184700 Sobic002G184700 Sobic010G110100--Sobic002G184700 Sobic010G110100--Sobic008G149300 Sobic010G110100--Sobic006G167700 Sobic010G110100--Sobic001G166900 Sobic006G234433--Sobic001G122600 Sobic007G008500--Sobic001G166900 Sobic006G248000 Sobic006G248000 Sobic007G008500--Sobic006G248000 Sobic007G008500--Sobic004G349550 Sobic007G008500--Sobic002G046000 Sobic010G198900 Sobic010G198900 Sobic007G008500--Sobic010G198900 Sobic007G008500--Sobic006G167700 Sobic007G008500--Sobic009G103800 Sobic007G008500--Sobic002G184700 Sobic007G008500--Sobic007G025600 Sobic007G218500 Sobic007G218500 Sobic004G091600--Sobic007G218500 Sobic005G167650 Sobic005G167650 Sobic004G091600--Sobic005G167650 Sobic003G061500 Sobic003G061500 Sobic004G091600--Sobic003G061500 Sobic009G104500 Sobic009G104500 Sobic004G091600--Sobic009G104500 Sobic004G091600--Sobic002G046000 Sobic004G091600--Sobic004G349550 Sobic004G091600--Sobic009G103800 Sobic004G091600--Sobic001G344300 Sobic010G007800 Sobic010G007800 Sobic004G091600--Sobic010G007800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.