Gene annotation
Transcriptome id Sobic.010G115200.1
Synonym Sb10g010000
Functional annotation ribosomal protein L7Ae, putative, expressed
UniProt C5Z8J0
Pfam PF01248
Panther DB PTHR23105 PTHR23105:SF61
NCBI CDD KOG3167; Box H/ACA snoRNP component, involved in ribosomal RNA pseudouridinylation
KEGG Orthology K11129; NHP2, H/ACA ribonucleoprotein complex subunit 2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G08180 : Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
RAP-DB (Rice) LOC_Os06g16290.1 : ribosomal protein L7Ae, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK01502 , KQK01501
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.010G115200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G361600 chaperonin, putative, expressed K04078: groES, chaperonin GroES
2 Sobic.004G252100 ribosomal protein L7Ae, putative, expressed K11129: NHP2, H/ACA ribonucleoprotein complex subunit 2
3 Sobic.004G349700 rRNA 2-O-methyltransferase fibrillarin 2, putative, expressed K14563: NOP1, rRNA 2'-O-methyltransferase fibrillarin
4 Sobic.006G057200 L11 domain containing ribosomal protein, putative, expressed K02870: RP-L12e, large subunit ribosomal protein L12e
5 Sobic.003G396600 down-regulated TF in developmental senescence(PubMedID : 27586543)@ZOS5-12 - C2H2 zinc finger protein, expressed -
6 Sobic.006G200000 RNA recognition motif, putative, expressed -
7 Sobic.005G113300 -(PubMedID : 26976818)@serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed K00600: glyA, glycine hydroxymethyltransferase
8 Sobic.003G347900 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
9 Sobic.010G069400 60S ribosomal protein L19-3, putative, expressed K02885: RP-L19e, large subunit ribosomal protein L19e
10 Sobic.005G080900 expressed protein -
11 Sobic.001G039400 40S ribosomal protein S26, putative, expressed K02976: RP-S26e, small subunit ribosomal protein S26e
12 Sobic.003G034600 CAMK_CAMK_like_Aur_like.1 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08850: aurora kinase, other
13 Sobic.001G016500 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
14 Sobic.003G078200 ribosomal protein L24, putative, expressed K02898: RP-L26e, large subunit ribosomal protein L26e
15 Sobic.003G109600 40S ribosomal protein S5, putative, expressed K02989: RP-S5e, small subunit ribosomal protein S5e
16 Sobic.009G173500 40S ribosomal protein S26, putative, expressed K02976: RP-S26e, small subunit ribosomal protein S26e
17 Sobic.001G295200 nucleoside diphosphate kinase, putative, expressed K00940: ndk, nucleoside-diphosphate kinase
18 Sobic.006G116700 60S ribosomal protein L6, putative, expressed K02934: RP-L6e, large subunit ribosomal protein L6e
19 Sobic.002G329800 expressed protein -
20 Sobic.010G076400 40S ribosomal protein S17, putative, expressed K02962: RP-S17e, small subunit ribosomal protein S17e


Gene co-expression network
sample Sobic010G115200 Sobic010G115200 Sobic001G361600 Sobic001G361600 Sobic010G115200--Sobic001G361600 Sobic004G252100 Sobic004G252100 Sobic010G115200--Sobic004G252100 Sobic004G349700 Sobic004G349700 Sobic010G115200--Sobic004G349700 Sobic006G057200 Sobic006G057200 Sobic010G115200--Sobic006G057200 Sobic003G396600 Sobic003G396600 Sobic010G115200--Sobic003G396600 Sobic006G200000 Sobic006G200000 Sobic010G115200--Sobic006G200000 Sobic005G113300 Sobic005G113300 Sobic010G115200--Sobic005G113300 Sobic003G347900 Sobic003G347900 Sobic010G115200--Sobic003G347900 Sobic010G069400 Sobic010G069400 Sobic010G115200--Sobic010G069400 Sobic001G295200 Sobic001G295200 Sobic001G361600--Sobic001G295200 Sobic001G361600--Sobic005G113300 Sobic006G116700 Sobic006G116700 Sobic001G361600--Sobic006G116700 Sobic001G018900 Sobic001G018900 Sobic001G361600--Sobic001G018900 Sobic004G220000 Sobic004G220000 Sobic001G361600--Sobic004G220000 Sobic003G078200 Sobic003G078200 Sobic001G361600--Sobic003G078200 Sobic006G141700 Sobic006G141700 Sobic001G361600--Sobic006G141700 Sobic009G188000 Sobic009G188000 Sobic001G361600--Sobic009G188000 Sobic003G408100 Sobic003G408100 Sobic001G361600--Sobic003G408100 Sobic001G016500 Sobic001G016500 Sobic004G252100--Sobic001G016500 Sobic005G019700 Sobic005G019700 Sobic004G252100--Sobic005G019700 Sobic004G252100--Sobic006G116700 Sobic004G252100--Sobic001G018900 Sobic007G019000 Sobic007G019000 Sobic004G252100--Sobic007G019000 Sobic007G190800 Sobic007G190800 Sobic004G252100--Sobic007G190800 Sobic001G533500 Sobic001G533500 Sobic004G252100--Sobic001G533500 Sobic009G050300 Sobic009G050300 Sobic004G252100--Sobic009G050300 Sobic007G197800 Sobic007G197800 Sobic004G252100--Sobic007G197800 Sobic004G349700--Sobic010G069400 Sobic001G039400 Sobic001G039400 Sobic004G349700--Sobic001G039400 Sobic003G387900 Sobic003G387900 Sobic004G349700--Sobic003G387900 Sobic001G085400 Sobic001G085400 Sobic004G349700--Sobic001G085400 Sobic002G047600 Sobic002G047600 Sobic004G349700--Sobic002G047600 Sobic002G304900 Sobic002G304900 Sobic004G349700--Sobic002G304900 Sobic009G233400 Sobic009G233400 Sobic004G349700--Sobic009G233400 Sobic002G115000 Sobic002G115000 Sobic004G349700--Sobic002G115000 Sobic007G019400 Sobic007G019400 Sobic004G349700--Sobic007G019400 Sobic002G179300 Sobic002G179300 Sobic006G057200--Sobic002G179300 Sobic007G178600 Sobic007G178600 Sobic006G057200--Sobic007G178600 Sobic006G057200--Sobic010G069400 Sobic004G008400 Sobic004G008400 Sobic006G057200--Sobic004G008400 Sobic004G244800 Sobic004G244800 Sobic006G057200--Sobic004G244800 Sobic010G070500 Sobic010G070500 Sobic006G057200--Sobic010G070500 Sobic001G508900 Sobic001G508900 Sobic006G057200--Sobic001G508900 Sobic002G286900 Sobic002G286900 Sobic006G057200--Sobic002G286900 Sobic006G057200--Sobic003G078200 Sobic003G396600--Sobic006G200000 Sobic003G396600--Sobic004G349700 Sobic003G011100 Sobic003G011100 Sobic003G396600--Sobic003G011100 Sobic005G080900 Sobic005G080900 Sobic003G396600--Sobic005G080900 Sobic003G396600--Sobic010G115200 Sobic009G088200 Sobic009G088200 Sobic003G396600--Sobic009G088200 Sobic002G101000 Sobic002G101000 Sobic003G396600--Sobic002G101000 Sobic003G396600--Sobic010G069400 Sobic001G397000 Sobic001G397000 Sobic003G396600--Sobic001G397000 Sobic006G120700 Sobic006G120700 Sobic006G200000--Sobic006G120700 Sobic006G200000--Sobic005G080900 Sobic006G200000--Sobic003G396600 Sobic010G265900 Sobic010G265900 Sobic006G200000--Sobic010G265900 Sobic003G034600 Sobic003G034600 Sobic006G200000--Sobic003G034600 Sobic006G200000--Sobic010G115200 Sobic006G083000 Sobic006G083000 Sobic006G200000--Sobic006G083000 Sobic003G300900 Sobic003G300900 Sobic006G200000--Sobic003G300900 Sobic001G410200 Sobic001G410200 Sobic006G200000--Sobic001G410200 Sobic005G113300--Sobic004G220000 Sobic005G113300--Sobic001G295200 Sobic005G113300--Sobic001G361600 Sobic005G113300--Sobic006G116700 Sobic005G113300--Sobic001G018900 Sobic005G113300--Sobic007G197800 Sobic009G076400 Sobic009G076400 Sobic005G113300--Sobic009G076400 Sobic002G379500 Sobic002G379500 Sobic005G113300--Sobic002G379500 Sobic003G160700 Sobic003G160700 Sobic005G113300--Sobic003G160700 Sobic003G347900--Sobic006G057200 Sobic007G198000 Sobic007G198000 Sobic003G347900--Sobic007G198000 Sobic001G313200 Sobic001G313200 Sobic003G347900--Sobic001G313200 Sobic001G529400 Sobic001G529400 Sobic003G347900--Sobic001G529400 Sobic006G191800 Sobic006G191800 Sobic003G347900--Sobic006G191800 Sobic002G276000 Sobic002G276000 Sobic003G347900--Sobic002G276000 Sobic010G047100 Sobic010G047100 Sobic003G347900--Sobic010G047100 Sobic003G347900--Sobic003G078200 Sobic003G057100 Sobic003G057100 Sobic003G347900--Sobic003G057100 Sobic010G069400--Sobic003G387900 Sobic010G069400--Sobic009G233400 Sobic010G069400--Sobic001G039400 Sobic005G050500 Sobic005G050500 Sobic010G069400--Sobic005G050500 Sobic010G069400--Sobic002G304900 Sobic010G069400--Sobic002G047600 Sobic010G069400--Sobic004G349700 Sobic002G056200 Sobic002G056200 Sobic010G069400--Sobic002G056200 Sobic010G069400--Sobic001G085400
Octagon: transcription factors


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