Gene annotation
Transcriptome id Sobic.002G379600.1
Synonym Sb02g039660
Functional annotation phospho-2-dehydro-3-deoxyheptonate aldolase, chloroplast precursor, putative, expressed
UniProt C5X2H5
Pfam PF01474
Panther DB PTHR21337 PTHR21337:SF5
NCBI CDD -
KEGG Orthology K01626; E2.5.1.54, aroF, aroG, 3-deoxy-7-phosphoheptulonate synthase
Gene Ontology GO:0009073; aromatic amino acid family biosynthetic process GO:00038493-deoxy-7-phosphoheptulonate synthase activity


Orthologs (automatic annotation)
TAIR AT1G22410 : Class-II DAHP synthetase family protein
RAP-DB (Rice) LOC_Os07g42960.1 : phospho-2-dehydro-3-deoxyheptonate aldolase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a014474 , Zm00025a043143 , Zm00025a015237 , Zm00025a046444 , Zm00025a023917 , Zm00025a010602 , Zm00025a002725 , Zm00025a029047 , Zm00025a033710 , Zm00025a048792
Brachypodium KQK15223 , KQK21438 , KQJ97844 , KQJ98726 , KQK15222
Barley HORVU0Hr1G000490.2 , HORVU1Hr1G055370.1 , HORVU2Hr1G029870.1 , HORVU2Hr1G029870.2 , HORVU2Hr1G029870.3 , HORVU2Hr1G029870.4 , HORVU0Hr1G000490.1
Wheat TraesCS2A02G163600 , TraesCS1B02G229700 , TraesCS1D02G218300 , TraesCS2B02G189300 , TraesCS2D02G170400
Populus PNT37008 , PNT37009 , PNT37007 , PNT48851


JBrowse

Open New Page


cDNA sequences
Sobic.002G379600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G333800 NADH-cytochrome b5 reductase, putative, expressed K00326: cytochrome-b5 reductase
2 Sobic.001G410200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@OsAPx1 - Cytosolic Ascorbate Peroxidase encoding gene 1-8, expressed K00434: L-ascorbate peroxidase
3 Sobic.003G410500 transaldolase, putative, expressed K00616: E2.2.1.2, talA, transaldolase
4 Sobic.002G128800 fiber protein Fb34, putative, expressed -
5 Sobic.001G459900 leucine-rich repeat resistance protein, putative, expressed -
6 Sobic.009G101700 40S ribosomal protein S7, putative, expressed K02993: RP-S7e, small subunit ribosomal protein S7e
7 Sobic.001G040100 methylenetetrahydrofolate reductase, putative, expressed K00297: metF, methylenetetrahydrofolate reductase (NADPH)
8 Sobic.010G023800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@3-phosphoshikimate 1-carboxyvinyltransferase, chloroplast precursor, putative, expressed K00800: 3-phosphoshikimate 1-carboxyvinyltransferase
9 Sobic.009G179100 ribosomal protein L7Ae, putative, expressed K02908: RP-L30e, large subunit ribosomal protein L30e
10 Sobic.001G304400 expressed protein -
11 Sobic.007G150800 expressed protein -
12 Sobic.005G113300 -(PubMedID : 26976818)@serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed K00600: glyA, glycine hydroxymethyltransferase
13 Sobic.002G179300 60S ribosomal protein L35a-3, putative, expressed K02917: RP-L35Ae, large subunit ribosomal protein L35Ae
14 Sobic.010G264300 LYR motif containing protein, putative, expressed K03965: NADH dehydrogenase (ubiquinone) 1 beta subcomplex subunit 9
15 Sobic.001G334300 - K02966: RP-S19e, small subunit ribosomal protein S19e
16 Sobic.004G282700 synthase, putative, expressed K12451: 3,5-epimerase/4-reductase
17 Sobic.003G210100 stress responsive A/B Barrel domain containing protein, expressed -
18 Sobic.005G080900 expressed protein -
19 Sobic.001G039400 40S ribosomal protein S26, putative, expressed K02976: RP-S26e, small subunit ribosomal protein S26e
20 Sobic.010G070500 60S ribosomal protein L35a-3, putative, expressed K02917: RP-L35Ae, large subunit ribosomal protein L35Ae


Gene co-expression network
sample Sobic002G379600 Sobic002G379600 Sobic003G333800 Sobic003G333800 Sobic002G379600--Sobic003G333800 Sobic001G410200 Sobic001G410200 Sobic002G379600--Sobic001G410200 Sobic003G410500 Sobic003G410500 Sobic002G379600--Sobic003G410500 Sobic002G128800 Sobic002G128800 Sobic002G379600--Sobic002G128800 Sobic001G459900 Sobic001G459900 Sobic002G379600--Sobic001G459900 Sobic009G101700 Sobic009G101700 Sobic002G379600--Sobic009G101700 Sobic001G040100 Sobic001G040100 Sobic002G379600--Sobic001G040100 Sobic010G023800 Sobic010G023800 Sobic002G379600--Sobic010G023800 Sobic009G179100 Sobic009G179100 Sobic002G379600--Sobic009G179100 Sobic003G333800--Sobic002G379600 Sobic003G333800--Sobic009G101700 Sobic004G342400 Sobic004G342400 Sobic003G333800--Sobic004G342400 Sobic003G333800--Sobic009G179100 Sobic002G101000 Sobic002G101000 Sobic003G333800--Sobic002G101000 Sobic003G333800--Sobic001G410200 Sobic010G264300 Sobic010G264300 Sobic003G333800--Sobic010G264300 Sobic009G144300 Sobic009G144300 Sobic003G333800--Sobic009G144300 Sobic001G370700 Sobic001G370700 Sobic003G333800--Sobic001G370700 Sobic010G190300 Sobic010G190300 Sobic001G410200--Sobic010G190300 Sobic003G300900 Sobic003G300900 Sobic001G410200--Sobic003G300900 Sobic006G200000 Sobic006G200000 Sobic001G410200--Sobic006G200000 Sobic007G029400 Sobic007G029400 Sobic001G410200--Sobic007G029400 Sobic001G410200--Sobic003G410500 Sobic005G113300 Sobic005G113300 Sobic001G410200--Sobic005G113300 Sobic001G410200--Sobic003G333800 Sobic001G410200--Sobic002G379600 Sobic009G212400 Sobic009G212400 Sobic001G410200--Sobic009G212400 Sobic003G410500--Sobic001G040100 Sobic001G444800 Sobic001G444800 Sobic003G410500--Sobic001G444800 Sobic004G138800 Sobic004G138800 Sobic003G410500--Sobic004G138800 Sobic003G219800 Sobic003G219800 Sobic003G410500--Sobic003G219800 Sobic002G257300 Sobic002G257300 Sobic003G410500--Sobic002G257300 Sobic001G304400 Sobic001G304400 Sobic003G410500--Sobic001G304400 Sobic003G363800 Sobic003G363800 Sobic003G410500--Sobic003G363800 Sobic003G410500--Sobic009G212400 Sobic009G238900 Sobic009G238900 Sobic003G410500--Sobic009G238900 Sobic002G252000 Sobic002G252000 Sobic002G128800--Sobic002G252000 Sobic007G150800 Sobic007G150800 Sobic002G128800--Sobic007G150800 Sobic001G418100 Sobic001G418100 Sobic002G128800--Sobic001G418100 Sobic002G396400 Sobic002G396400 Sobic002G128800--Sobic002G396400 Sobic001G475500 Sobic001G475500 Sobic002G128800--Sobic001G475500 Sobic010G052200 Sobic010G052200 Sobic002G128800--Sobic010G052200 Sobic006G156000 Sobic006G156000 Sobic002G128800--Sobic006G156000 Sobic002G128800--Sobic003G219800 Sobic003G443300 Sobic003G443300 Sobic002G128800--Sobic003G443300 Sobic001G459900--Sobic010G023800 Sobic009G212200 Sobic009G212200 Sobic001G459900--Sobic009G212200 Sobic001G281300 Sobic001G281300 Sobic001G459900--Sobic001G281300 Sobic003G379600 Sobic003G379600 Sobic001G459900--Sobic003G379600 Sobic001G334300 Sobic001G334300 Sobic001G459900--Sobic001G334300 Sobic010G060500 Sobic010G060500 Sobic001G459900--Sobic010G060500 Sobic004G231300 Sobic004G231300 Sobic001G459900--Sobic004G231300 Sobic001G014000 Sobic001G014000 Sobic001G459900--Sobic001G014000 Sobic001G459900--Sobic009G144300 Sobic009G101700--Sobic009G179100 Sobic005G050500 Sobic005G050500 Sobic009G101700--Sobic005G050500 Sobic009G101700--Sobic001G334300 Sobic003G387900 Sobic003G387900 Sobic009G101700--Sobic003G387900 Sobic009G101700--Sobic004G342400 Sobic006G213000 Sobic006G213000 Sobic009G101700--Sobic006G213000 Sobic001G226500 Sobic001G226500 Sobic009G101700--Sobic001G226500 Sobic009G242400 Sobic009G242400 Sobic009G101700--Sobic009G242400 Sobic002G379500 Sobic002G379500 Sobic009G101700--Sobic002G379500 Sobic005G112800 Sobic005G112800 Sobic001G040100--Sobic005G112800 Sobic001G040100--Sobic003G219800 Sobic002G356400 Sobic002G356400 Sobic001G040100--Sobic002G356400 Sobic003G209000 Sobic003G209000 Sobic001G040100--Sobic003G209000 Sobic003G151600 Sobic003G151600 Sobic001G040100--Sobic003G151600 Sobic001G040100--Sobic003G410500 Sobic001G040100--Sobic006G156000 Sobic002G418400 Sobic002G418400 Sobic001G040100--Sobic002G418400 Sobic001G040100--Sobic002G257300 Sobic007G115100 Sobic007G115100 Sobic010G023800--Sobic007G115100 Sobic010G023800--Sobic010G060500 Sobic004G269700 Sobic004G269700 Sobic010G023800--Sobic004G269700 Sobic010G023800--Sobic001G459900 Sobic010G023800--Sobic003G209000 Sobic009G149400 Sobic009G149400 Sobic010G023800--Sobic009G149400 Sobic008G129400 Sobic008G129400 Sobic010G023800--Sobic008G129400 Sobic002G187500 Sobic002G187500 Sobic010G023800--Sobic002G187500 Sobic001G505500 Sobic001G505500 Sobic010G023800--Sobic001G505500 Sobic002G304900 Sobic002G304900 Sobic009G179100--Sobic002G304900 Sobic009G179100--Sobic009G101700 Sobic009G179100--Sobic004G342400 Sobic009G179100--Sobic001G334300 Sobic009G179100--Sobic005G050500 Sobic009G233400 Sobic009G233400 Sobic009G179100--Sobic009G233400 Sobic009G179100--Sobic003G387900 Sobic001G039400 Sobic001G039400 Sobic009G179100--Sobic001G039400 Sobic009G173500 Sobic009G173500 Sobic009G179100--Sobic009G173500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.