Gene annotation
Transcriptome id Sobic.008G126600.1
Synonym Sb08g017800
Functional annotation calmodulin binding protein, putative, expressed
UniProt C5YPN8
Pfam PF07887
Panther DB PTHR31713 PTHR31713:SF16
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006950; response to stress GO:0005516calmodulin binding


Orthologs (automatic annotation)
TAIR AT5G57580 : Calmodulin-binding protein
RAP-DB (Rice) LOC_Os12g36910.1 : calmodulin binding protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G059500 solute carrier family 35 member E3, putative, expressed K15285: solute carrier family 35, member E3
2 Sobic.008G168100 Class III HD ZIP family protein(PubMedID : 23915383)@START domain containing protein, expressed K09338: homeobox-leucine zipper protein
3 Sobic.003G294100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dihydropyrimidinase, putative, expressed K01465: URA4, dihydroorotase
4 Sobic.003G045900 gibberellin 3-beta-dioxygenase 2-2, putative, expressed K04124: gibberellin 3beta-dioxygenase
5 Sobic.003G052900 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by BR treatment"(PubMedID : 20499123)@-(PubMedID : 23108465)@LOB family(PubMedID : 16399802)@DUF260 domain containing protein, putative, expressed -
6 Sobic.009G250100 extra-large G-protein-related, putative, expressed -
7 Sobic.001G337400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@phospholipase C, putative, expressed -
8 Sobic.002G271300 NC domain-containing protein, putative, expressed -
9 Sobic.001G460400 expressed protein -
10 Sobic.010G218300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA binding protein, putative, expressed -
11 Sobic.002G186900 enolase, putative, expressed K01689: ENO, enolase
12 Sobic.002G167000 "C3 PTPC, housekeeping gene"(PubMedID : 2308851)@phosphoenolphyruvate carboxylase(PubMedID : 26904072)@phosphoenolpyruvate carboxylase, putative, expressed K01595: phosphoenolpyruvate carboxylase
13 Sobic.005G017300 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
14 Sobic.006G075600 WD-40 repeat family protein, putative, expressed -
15 Sobic.010G192432 - K14431: transcription factor TGA
16 Sobic.003G028300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Class III HD ZIP family protein(PubMedID : 23915383)@START domain containing protein, expressed K09338: homeobox-leucine zipper protein
17 Sobic.001G157800 26S protease regulatory subunit 6B, putative, expressed K03063: PSMC4, 26S proteasome regulatory subunit T3
18 Sobic.005G022200 XRN 5-3 exonuclease N-terminus family protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
19 Sobic.004G193500 expressed protein -
20 Sobic.001G144200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF581 domain containing protein, expressed -


Gene co-expression network
sample Sobic008G126600 Sobic008G126600 Sobic009G059500 Sobic009G059500 Sobic008G126600--Sobic009G059500 Sobic008G168100 Sobic008G168100 Sobic008G126600--Sobic008G168100 Sobic003G294100 Sobic003G294100 Sobic008G126600--Sobic003G294100 Sobic003G045900 Sobic003G045900 Sobic008G126600--Sobic003G045900 Sobic003G052900 Sobic003G052900 Sobic008G126600--Sobic003G052900 Sobic009G250100 Sobic009G250100 Sobic008G126600--Sobic009G250100 Sobic001G337400 Sobic001G337400 Sobic008G126600--Sobic001G337400 Sobic002G271300 Sobic002G271300 Sobic008G126600--Sobic002G271300 Sobic001G460400 Sobic001G460400 Sobic008G126600--Sobic001G460400 Sobic009G059500--Sobic008G168100 Sobic009G059500--Sobic002G271300 Sobic002G186900 Sobic002G186900 Sobic009G059500--Sobic002G186900 Sobic009G059500--Sobic008G126600 Sobic009G059500--Sobic003G294100 Sobic008G141200 Sobic008G141200 Sobic009G059500--Sobic008G141200 Sobic001G228200 Sobic001G228200 Sobic009G059500--Sobic001G228200 Sobic004G054000 Sobic004G054000 Sobic009G059500--Sobic004G054000 Sobic007G044400 Sobic007G044400 Sobic009G059500--Sobic007G044400 Sobic008G168100--Sobic009G059500 Sobic008G168100--Sobic001G228200 Sobic008G168100--Sobic004G054000 Sobic008G168100--Sobic003G294100 Sobic008G168100--Sobic002G271300 Sobic008G168100--Sobic009G250100 Sobic008G168100--Sobic008G126600 Sobic002G094600 Sobic002G094600 Sobic008G168100--Sobic002G094600 Sobic007G152900 Sobic007G152900 Sobic008G168100--Sobic007G152900 Sobic003G294100--Sobic009G059500 Sobic003G294100--Sobic008G168100 Sobic002G280700 Sobic002G280700 Sobic003G294100--Sobic002G280700 Sobic001G157800 Sobic001G157800 Sobic003G294100--Sobic001G157800 Sobic003G294100--Sobic009G250100 Sobic003G294100--Sobic002G186900 Sobic003G294100--Sobic002G271300 Sobic003G294100--Sobic008G126600 Sobic003G294100--Sobic007G152900 Sobic009G095800 Sobic009G095800 Sobic003G045900--Sobic009G095800 Sobic003G007400 Sobic003G007400 Sobic003G045900--Sobic003G007400 Sobic010G268700 Sobic010G268700 Sobic003G045900--Sobic010G268700 Sobic008G010500 Sobic008G010500 Sobic003G045900--Sobic008G010500 Sobic005G206000 Sobic005G206000 Sobic003G045900--Sobic005G206000 Sobic003G161400 Sobic003G161400 Sobic003G045900--Sobic003G161400 Sobic001G342000 Sobic001G342000 Sobic003G045900--Sobic001G342000 Sobic006G097900 Sobic006G097900 Sobic003G045900--Sobic006G097900 Sobic003G255600 Sobic003G255600 Sobic003G045900--Sobic003G255600 Sobic004G030300 Sobic004G030300 Sobic003G052900--Sobic004G030300 Sobic001G245800 Sobic001G245800 Sobic003G052900--Sobic001G245800 Sobic001G455100 Sobic001G455100 Sobic003G052900--Sobic001G455100 Sobic008G135300 Sobic008G135300 Sobic003G052900--Sobic008G135300 Sobic002G226500 Sobic002G226500 Sobic003G052900--Sobic002G226500 Sobic008G099100 Sobic008G099100 Sobic003G052900--Sobic008G099100 Sobic001G295800 Sobic001G295800 Sobic003G052900--Sobic001G295800 Sobic005G231300 Sobic005G231300 Sobic003G052900--Sobic005G231300 Sobic003G247600 Sobic003G247600 Sobic003G052900--Sobic003G247600 Sobic001G163800 Sobic001G163800 Sobic009G250100--Sobic001G163800 Sobic009G250100--Sobic008G168100 Sobic009G250100--Sobic004G054000 Sobic009G250100--Sobic009G059500 Sobic010G131400 Sobic010G131400 Sobic009G250100--Sobic010G131400 Sobic008G062900 Sobic008G062900 Sobic009G250100--Sobic008G062900 Sobic005G022500 Sobic005G022500 Sobic009G250100--Sobic005G022500 Sobic009G250100--Sobic003G294100 Sobic004G038200 Sobic004G038200 Sobic009G250100--Sobic004G038200 Sobic004G111100 Sobic004G111100 Sobic001G337400--Sobic004G111100 Sobic001G337400--Sobic008G168100 Sobic001G337400--Sobic009G059500 Sobic001G337400--Sobic008G126600 Sobic009G246700 Sobic009G246700 Sobic001G337400--Sobic009G246700 Sobic009G026101 Sobic009G026101 Sobic001G337400--Sobic009G026101 Sobic001G337400--Sobic001G228200 Sobic001G133900 Sobic001G133900 Sobic001G337400--Sobic001G133900 Sobic004G051300 Sobic004G051300 Sobic001G337400--Sobic004G051300 Sobic002G271300--Sobic009G059500 Sobic002G271300--Sobic002G186900 Sobic002G271300--Sobic005G022500 Sobic002G271300--Sobic010G131400 Sobic002G271300--Sobic008G168100 Sobic002G254900 Sobic002G254900 Sobic002G271300--Sobic002G254900 Sobic003G087700 Sobic003G087700 Sobic002G271300--Sobic003G087700 Sobic002G271300--Sobic008G062900 Sobic010G114000 Sobic010G114000 Sobic002G271300--Sobic010G114000 Sobic001G360700 Sobic001G360700 Sobic001G460400--Sobic001G360700 Sobic001G067800 Sobic001G067800 Sobic001G460400--Sobic001G067800 Sobic004G161900 Sobic004G161900 Sobic001G460400--Sobic004G161900 Sobic003G017601 Sobic003G017601 Sobic001G460400--Sobic003G017601 Sobic002G207200 Sobic002G207200 Sobic001G460400--Sobic002G207200 Sobic001G227850 Sobic001G227850 Sobic001G460400--Sobic001G227850 Sobic001G460400--Sobic009G246700 Sobic008G037900 Sobic008G037900 Sobic001G460400--Sobic008G037900 Sobic010G218300 Sobic010G218300 Sobic001G460400--Sobic010G218300
Octagon: transcription factors


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